data_3F0B # _model_server_result.job_id ZkA4qbwc2ahIikJ5rrIzIw _model_server_result.datetime_utc '2024-11-05 06:42:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":158}' # _entry.id 3F0B # _exptl.entry_id 3F0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(3R)-3-(5-methoxybiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F0B _cell.length_a 79.12 _cell.length_b 79.12 _cell.length_c 109.145 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H22 N4 O' _chem_comp.formula_weight 358.436 _chem_comp.id 53R _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(3R)-3-(5-methoxybiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 53R doub 1 n y C20 C25 53R sing 2 n y C21 C22 53R sing 3 n y C22 C23 53R doub 4 n y C23 C24 53R sing 5 n y C24 C25 53R doub 6 n y C25 C18 53R sing 7 n y C18 C19 53R doub 8 n y C18 C17 53R sing 9 n y C19 C14 53R sing 10 n y C17 C16 53R doub 11 n y C16 O17 53R sing 12 n n C16 C15 53R sing 13 n y O17 C2 53R sing 14 n n C15 C14 53R doub 15 n y C14 C12 53R sing 16 n n C12 C13 53R sing 17 n n C12 C11 53R sing 18 n n C11 C10 53R trip 19 n n C10 C6 53R sing 20 n n C6 C5 53R doub 21 n y C6 C1 53R sing 22 n y C5 C8 53R sing 23 n n C5 N4 53R sing 24 n y N4 C3 53R doub 25 n y C3 N7 53R sing 26 n n C3 N2 53R sing 27 n y N2 C1 53R doub 28 n y C1 N9 53R sing 29 n n C20 H20 53R sing 30 n n C21 H21 53R sing 31 n n C22 H22 53R sing 32 n n C23 H23 53R sing 33 n n C24 H24 53R sing 34 n n C19 H19 53R sing 35 n n C17 H17 53R sing 36 n n C2 H2 53R sing 37 n n C2 H2A 53R sing 38 n n C2 H2B 53R sing 39 n n C15 H15 53R sing 40 n n C12 H12 53R sing 41 n n C13 H13 53R sing 42 n n C13 H13A 53R sing 43 n n C13 H13B 53R sing 44 n n C8 H8 53R sing 45 n n C8 H8A 53R sing 46 n n C8 H8B 53R sing 47 n n N7 HN7 53R sing 48 n n N7 HN7A 53R sing 49 n n N9 HN9 53R sing 50 n n N9 HN9A 53R sing 51 n n # _atom_sites.entry_id 3F0B _atom_sites.fract_transf_matrix[1][1] 0.012639 _atom_sites.fract_transf_matrix[1][2] 0.007297 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 207 207 NDP NAP . C 3 53R X 1 158 158 53R 53R . D 4 HOH X 1 159 159 HOH HOH . D 4 HOH X 2 160 160 HOH HOH . D 4 HOH X 3 161 161 HOH HOH . D 4 HOH X 4 162 162 HOH HOH . D 4 HOH X 5 163 163 HOH HOH . D 4 HOH X 6 164 164 HOH HOH . D 4 HOH X 7 165 165 HOH HOH . D 4 HOH X 8 166 166 HOH HOH . D 4 HOH X 9 167 167 HOH HOH . D 4 HOH X 10 168 168 HOH HOH . D 4 HOH X 11 169 169 HOH HOH . D 4 HOH X 12 170 170 HOH HOH . D 4 HOH X 13 171 171 HOH HOH . D 4 HOH X 14 172 172 HOH HOH . D 4 HOH X 15 173 173 HOH HOH . D 4 HOH X 16 174 174 HOH HOH . D 4 HOH X 17 175 175 HOH HOH . D 4 HOH X 18 176 176 HOH HOH . D 4 HOH X 19 177 177 HOH HOH . D 4 HOH X 20 178 178 HOH HOH . D 4 HOH X 21 179 179 HOH HOH . D 4 HOH X 22 180 180 HOH HOH . D 4 HOH X 23 181 181 HOH HOH . D 4 HOH X 24 182 182 HOH HOH . D 4 HOH X 25 183 183 HOH HOH . D 4 HOH X 26 184 184 HOH HOH . D 4 HOH X 27 185 185 HOH HOH . D 4 HOH X 28 186 186 HOH HOH . D 4 HOH X 29 187 187 HOH HOH . D 4 HOH X 30 188 188 HOH HOH . D 4 HOH X 31 189 189 HOH HOH . D 4 HOH X 32 190 190 HOH HOH . D 4 HOH X 33 192 192 HOH HOH . D 4 HOH X 34 193 193 HOH HOH . D 4 HOH X 35 194 194 HOH HOH . D 4 HOH X 36 195 195 HOH HOH . D 4 HOH X 37 196 196 HOH HOH . D 4 HOH X 38 197 197 HOH HOH . D 4 HOH X 39 198 198 HOH HOH . D 4 HOH X 40 199 199 HOH HOH . D 4 HOH X 41 200 200 HOH HOH . D 4 HOH X 42 201 201 HOH HOH . D 4 HOH X 43 202 202 HOH HOH . D 4 HOH X 44 203 203 HOH HOH . D 4 HOH X 45 204 204 HOH HOH . D 4 HOH X 46 205 205 HOH HOH . D 4 HOH X 47 206 206 HOH HOH . D 4 HOH X 48 208 208 HOH HOH . D 4 HOH X 49 209 209 HOH HOH . D 4 HOH X 50 210 210 HOH HOH . D 4 HOH X 51 211 211 HOH HOH . D 4 HOH X 52 212 212 HOH HOH . D 4 HOH X 53 213 213 HOH HOH . D 4 HOH X 54 214 214 HOH HOH . D 4 HOH X 55 215 215 HOH HOH . D 4 HOH X 56 216 216 HOH HOH . D 4 HOH X 57 217 217 HOH HOH . D 4 HOH X 58 218 218 HOH HOH . D 4 HOH X 59 219 219 HOH HOH . D 4 HOH X 60 220 220 HOH HOH . D 4 HOH X 61 221 221 HOH HOH . D 4 HOH X 62 222 222 HOH HOH . D 4 HOH X 63 223 223 HOH HOH . D 4 HOH X 64 224 224 HOH HOH . D 4 HOH X 65 225 225 HOH HOH . D 4 HOH X 66 226 226 HOH HOH . D 4 HOH X 67 227 227 HOH HOH . D 4 HOH X 68 229 229 HOH HOH . D 4 HOH X 69 230 230 HOH HOH . D 4 HOH X 70 231 231 HOH HOH . D 4 HOH X 71 232 232 HOH HOH . D 4 HOH X 72 233 233 HOH HOH . D 4 HOH X 73 234 234 HOH HOH . D 4 HOH X 74 235 235 HOH HOH . D 4 HOH X 75 236 236 HOH HOH . D 4 HOH X 76 237 237 HOH HOH . D 4 HOH X 77 238 238 HOH HOH . D 4 HOH X 78 239 239 HOH HOH . D 4 HOH X 79 240 240 HOH HOH . D 4 HOH X 80 241 241 HOH HOH . D 4 HOH X 81 242 242 HOH HOH . D 4 HOH X 82 243 243 HOH HOH . D 4 HOH X 83 244 244 HOH HOH . D 4 HOH X 84 245 245 HOH HOH . D 4 HOH X 85 246 246 HOH HOH . D 4 HOH X 86 248 248 HOH HOH . D 4 HOH X 87 249 249 HOH HOH . D 4 HOH X 88 250 250 HOH HOH . D 4 HOH X 89 251 251 HOH HOH . D 4 HOH X 90 252 252 HOH HOH . D 4 HOH X 91 254 254 HOH HOH . D 4 HOH X 92 255 255 HOH HOH . D 4 HOH X 93 256 256 HOH HOH . D 4 HOH X 94 257 257 HOH HOH . D 4 HOH X 95 258 258 HOH HOH . D 4 HOH X 96 259 259 HOH HOH . D 4 HOH X 97 260 260 HOH HOH . D 4 HOH X 98 261 261 HOH HOH . D 4 HOH X 99 262 262 HOH HOH . D 4 HOH X 100 263 263 HOH HOH . D 4 HOH X 101 264 264 HOH HOH . D 4 HOH X 102 265 265 HOH HOH . D 4 HOH X 103 266 266 HOH HOH . D 4 HOH X 104 267 267 HOH HOH . D 4 HOH X 105 268 268 HOH HOH . D 4 HOH X 106 269 269 HOH HOH . D 4 HOH X 107 270 270 HOH HOH . D 4 HOH X 108 271 271 HOH HOH . D 4 HOH X 109 272 272 HOH HOH . D 4 HOH X 110 273 273 HOH HOH . D 4 HOH X 111 275 275 HOH HOH . D 4 HOH X 112 276 276 HOH HOH . D 4 HOH X 113 277 277 HOH HOH . D 4 HOH X 114 278 278 HOH HOH . D 4 HOH X 115 279 279 HOH HOH . D 4 HOH X 116 280 280 HOH HOH . D 4 HOH X 117 281 281 HOH HOH . D 4 HOH X 118 282 282 HOH HOH . D 4 HOH X 119 283 283 HOH HOH . D 4 HOH X 120 285 285 HOH HOH . D 4 HOH X 121 286 286 HOH HOH . D 4 HOH X 122 287 287 HOH HOH . D 4 HOH X 123 288 288 HOH HOH . D 4 HOH X 124 289 289 HOH HOH . D 4 HOH X 125 291 291 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 53R . A . C 3 -36.281 -11 44.086 0.2 18.52 ? C20 53R 158 X 1 HETATM 2 C C20 53R . B . C 3 -33.461 -10.595 40.618 0.8 34.15 ? C20 53R 158 X 1 HETATM 3 C C21 53R . A . C 3 -37.2 -10.289 44.866 0.2 18.17 ? C21 53R 158 X 1 HETATM 4 C C21 53R . B . C 3 -34.323 -9.502 40.517 0.8 34.63 ? C21 53R 158 X 1 HETATM 5 C C22 53R . A . C 3 -36.816 -9.799 46.114 0.2 18.41 ? C22 53R 158 X 1 HETATM 6 C C22 53R . B . C 3 -35.682 -9.659 40.807 0.8 34.3 ? C22 53R 158 X 1 HETATM 7 C C23 53R . A . C 3 -35.516 -10.02 46.576 0.2 18.24 ? C23 53R 158 X 1 HETATM 8 C C23 53R . B . C 3 -36.175 -10.907 41.2 0.8 34.41 ? C23 53R 158 X 1 HETATM 9 C C24 53R . A . C 3 -34.604 -10.73 45.795 0.2 17.92 ? C24 53R 158 X 1 HETATM 10 C C24 53R . B . C 3 -35.31 -11.998 41.303 0.8 34.55 ? C24 53R 158 X 1 HETATM 11 C C25 53R . A . C 3 -34.979 -11.228 44.544 0.2 18.07 ? C25 53R 158 X 1 HETATM 12 C C25 53R . B . C 3 -33.946 -11.851 41.01 0.8 33.08 ? C25 53R 158 X 1 HETATM 13 C C18 53R . A . C 3 -34.068 -11.933 43.748 0.2 18.07 ? C18 53R 158 X 1 HETATM 14 C C18 53R . B . C 3 -33.084 -12.957 41.107 0.8 33.83 ? C18 53R 158 X 1 HETATM 15 C C19 53R . A . C 3 -32.755 -12.159 44.17 0.2 18.21 ? C19 53R 158 X 1 HETATM 16 C C19 53R . B . C 3 -31.922 -12.869 41.874 0.8 32.36 ? C19 53R 158 X 1 HETATM 17 C C17 53R . A . C 3 -34.468 -12.413 42.5 0.2 18.07 ? C17 53R 158 X 1 HETATM 18 C C17 53R . B . C 3 -33.368 -14.177 40.461 0.8 33.1 ? C17 53R 158 X 1 HETATM 19 C C16 53R . A . C 3 -33.582 -13.117 41.69 0.2 18.47 ? C16 53R 158 X 1 HETATM 20 C C16 53R . B . C 3 -32.503 -15.284 40.573 0.8 33.6 ? C16 53R 158 X 1 HETATM 21 O O17 53R . A . C 3 -34.005 -13.573 40.476 0.2 18.18 ? O17 53R 158 X 1 HETATM 22 O O17 53R . B . C 3 -32.753 -16.48 39.955 0.8 33.75 ? O17 53R 158 X 1 HETATM 23 C C2 53R . A . C 3 -33.71 -14.967 40.229 0.2 17.85 ? C2 53R 158 X 1 HETATM 24 C C2 53R . B . C 3 -34.035 -16.61 39.283 0.8 34.97 ? C2 53R 158 X 1 HETATM 25 C C15 53R . A . C 3 -32.27 -13.327 42.121 0.2 18.2 ? C15 53R 158 X 1 HETATM 26 C C15 53R . B . C 3 -31.341 -15.167 41.338 0.8 32.51 ? C15 53R 158 X 1 HETATM 27 C C14 53R . A . C 3 -31.854 -12.865 43.368 0.2 17.4 ? C14 53R 158 X 1 HETATM 28 C C14 53R . B . C 3 -31.055 -13.958 41.987 0.8 31.04 ? C14 53R 158 X 1 HETATM 29 C C12 53R . A . C 3 -30.409 -13.104 43.836 0.2 16.86 ? C12 53R 158 X 1 HETATM 30 C C12 53R . B . C 3 -29.822 -13.738 42.872 0.8 28.01 ? C12 53R 158 X 1 HETATM 31 C C13 53R . A . C 3 -29.963 -14.547 43.594 0.2 16.04 ? C13 53R 158 X 1 HETATM 32 C C13 53R . B . C 3 -29.037 -14.988 43.173 0.8 28.99 ? C13 53R 158 X 1 HETATM 33 C C11 53R . A . C 3 -29.554 -12.178 43.079 0.2 16.86 ? C11 53R 158 X 1 HETATM 34 C C11 53R . B . C 3 -29.008 -12.675 42.267 0.8 27.05 ? C11 53R 158 X 1 HETATM 35 C C10 53R . A . C 3 -28.893 -11.339 42.486 0.2 16.42 ? C10 53R 158 X 1 HETATM 36 C C10 53R . B . C 3 -28.471 -11.68 41.881 0.8 26.11 ? C10 53R 158 X 1 HETATM 37 C C6 53R . A . C 3 -28.193 -10.245 41.881 0.2 16.49 ? C6 53R 158 X 1 HETATM 38 C C6 53R . B . C 3 -27.948 -10.399 41.534 0.8 26.3 ? C6 53R 158 X 1 HETATM 39 C C5 53R . A . C 3 -28.511 -8.97 42.33 0.2 16.17 ? C5 53R 158 X 1 HETATM 40 C C5 53R . B . C 3 -28.518 -9.256 42.108 0.8 25.59 ? C5 53R 158 X 1 HETATM 41 C C8 53R . A . C 3 -29.57 -8.796 43.421 0.2 16.43 ? C8 53R 158 X 1 HETATM 42 C C8 53R . B . C 3 -29.683 -9.368 43.09 0.8 25.67 ? C8 53R 158 X 1 HETATM 43 N N4 53R . A . C 3 -27.889 -7.901 41.806 0.2 16.34 ? N4 53R 158 X 1 HETATM 44 N N4 53R . B . C 3 -28.036 -8.041 41.788 0.8 25.79 ? N4 53R 158 X 1 HETATM 45 C C3 53R . A . C 3 -26.957 -8.05 40.85 0.2 16.36 ? C3 53R 158 X 1 HETATM 46 C C3 53R . B . C 3 -27.008 -7.931 40.928 0.8 26.01 ? C3 53R 158 X 1 HETATM 47 N N7 53R . A . C 3 -26.358 -6.975 40.345 0.2 16.51 ? N7 53R 158 X 1 HETATM 48 N N7 53R . B . C 3 -26.527 -6.733 40.61 0.8 26.23 ? N7 53R 158 X 1 HETATM 49 N N2 53R . A . C 3 -26.635 -9.273 40.394 0.2 16.42 ? N2 53R 158 X 1 HETATM 50 N N2 53R . B . C 3 -26.461 -9.02 40.366 0.8 26.01 ? N2 53R 158 X 1 HETATM 51 C C1 53R . A . C 3 -27.221 -10.38 40.885 0.2 16.33 ? C1 53R 158 X 1 HETATM 52 C C1 53R . B . C 3 -26.886 -10.261 40.65 0.8 25.76 ? C1 53R 158 X 1 HETATM 53 N N9 53R . A . C 3 -26.862 -11.567 40.407 0.2 16.29 ? N9 53R 158 X 1 HETATM 54 N N9 53R . B . C 3 -26.302 -11.319 40.088 0.8 24.57 ? N9 53R 158 X 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 54 #