data_3F0Q # _model_server_result.job_id BUgO1_AdY9yN0RdZCL-SGg _model_server_result.datetime_utc '2024-11-25 09:36:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f0q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":158}' # _entry.id 3F0Q # _exptl.entry_id 3F0Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F0Q _cell.length_a 79.161 _cell.length_b 79.161 _cell.length_c 108.801 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F0Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H26 N4 O' _chem_comp.formula_weight 386.489 _chem_comp.id 52V _chem_comp.mon_nstd_flag . _chem_comp.name "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C1 52V sing 1 n n N2 C1 52V doub 2 n y C1 C6 52V sing 3 n y C2 O17 52V sing 4 n n C2 H2 52V sing 5 n n C2 H2A 52V sing 6 n n C2 H2B 52V sing 7 n n N2 C3 52V sing 8 n y N7 C3 52V sing 9 n n C3 N4 52V doub 10 n y C6 C10 52V sing 11 n n C6 C5 52V doub 12 n y C14 C12 52V sing 13 n n C11 C12 52V sing 14 n n C12 C13 52V sing 15 n n C12 H12 52V sing 16 n n C13 H13 52V sing 17 n n C13 H13A 52V sing 18 n n C13 H13B 52V sing 19 n n C15 C14 52V doub 20 n y C14 C19 52V sing 21 n y C16 C15 52V sing 22 n y C15 H15 52V sing 23 n n O17 C16 52V sing 24 n n C16 C17 52V doub 25 n y C17 C18 52V sing 26 n y C17 H17 52V sing 27 n n C18 C25 52V sing 28 n y C18 C19 52V doub 29 n y C20 C26 52V sing 30 n n C26 H26 52V sing 31 n n C26 H26A 52V sing 32 n n C26 H26B 52V sing 33 n n C25 C20 52V doub 34 n y C20 C21 52V sing 35 n y C22 C21 52V doub 36 n y C21 H21 52V sing 37 n n C23 C22 52V sing 38 n y C22 H22 52V sing 39 n n C24 C23 52V doub 40 n y C23 H23 52V sing 41 n n C27 C24 52V sing 42 n n C24 C25 52V sing 43 n y C27 H27 52V sing 44 n n C27 H27A 52V sing 45 n n C27 H27B 52V sing 46 n n C19 H19 52V sing 47 n n C10 C11 52V trip 48 n n N4 C5 52V sing 49 n y C5 C8 52V sing 50 n n C8 H8 52V sing 51 n n C8 H8A 52V sing 52 n n C8 H8B 52V sing 53 n n N7 HN7 52V sing 54 n n N7 HN7A 52V sing 55 n n N9 HN9 52V sing 56 n n N9 HN9A 52V sing 57 n n # _atom_sites.entry_id 3F0Q _atom_sites.fract_transf_matrix[1][1] 0.012632 _atom_sites.fract_transf_matrix[1][2] 0.007293 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009191 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 207 207 NDP NAP . C 3 52V X 1 158 1 52V 52V . D 4 HOH X 1 159 1 HOH HOH . D 4 HOH X 2 160 2 HOH HOH . D 4 HOH X 3 161 3 HOH HOH . D 4 HOH X 4 162 4 HOH HOH . D 4 HOH X 5 163 5 HOH HOH . D 4 HOH X 6 164 6 HOH HOH . D 4 HOH X 7 165 7 HOH HOH . D 4 HOH X 8 166 8 HOH HOH . D 4 HOH X 9 167 9 HOH HOH . D 4 HOH X 10 168 10 HOH HOH . D 4 HOH X 11 169 12 HOH HOH . D 4 HOH X 12 170 13 HOH HOH . D 4 HOH X 13 171 14 HOH HOH . D 4 HOH X 14 172 15 HOH HOH . D 4 HOH X 15 173 16 HOH HOH . D 4 HOH X 16 174 17 HOH HOH . D 4 HOH X 17 175 18 HOH HOH . D 4 HOH X 18 176 19 HOH HOH . D 4 HOH X 19 177 20 HOH HOH . D 4 HOH X 20 178 21 HOH HOH . D 4 HOH X 21 179 22 HOH HOH . D 4 HOH X 22 180 23 HOH HOH . D 4 HOH X 23 181 24 HOH HOH . D 4 HOH X 24 182 25 HOH HOH . D 4 HOH X 25 183 26 HOH HOH . D 4 HOH X 26 184 27 HOH HOH . D 4 HOH X 27 185 28 HOH HOH . D 4 HOH X 28 186 29 HOH HOH . D 4 HOH X 29 187 30 HOH HOH . D 4 HOH X 30 188 31 HOH HOH . D 4 HOH X 31 189 32 HOH HOH . D 4 HOH X 32 190 33 HOH HOH . D 4 HOH X 33 191 34 HOH HOH . D 4 HOH X 34 192 35 HOH HOH . D 4 HOH X 35 193 36 HOH HOH . D 4 HOH X 36 194 37 HOH HOH . D 4 HOH X 37 195 38 HOH HOH . D 4 HOH X 38 196 39 HOH HOH . D 4 HOH X 39 197 40 HOH HOH . D 4 HOH X 40 198 41 HOH HOH . D 4 HOH X 41 199 42 HOH HOH . D 4 HOH X 42 200 43 HOH HOH . D 4 HOH X 43 201 44 HOH HOH . D 4 HOH X 44 202 45 HOH HOH . D 4 HOH X 45 203 46 HOH HOH . D 4 HOH X 46 204 47 HOH HOH . D 4 HOH X 47 205 48 HOH HOH . D 4 HOH X 48 206 49 HOH HOH . D 4 HOH X 49 208 50 HOH HOH . D 4 HOH X 50 209 51 HOH HOH . D 4 HOH X 51 210 53 HOH HOH . D 4 HOH X 52 211 54 HOH HOH . D 4 HOH X 53 212 55 HOH HOH . D 4 HOH X 54 213 56 HOH HOH . D 4 HOH X 55 214 58 HOH HOH . D 4 HOH X 56 215 59 HOH HOH . D 4 HOH X 57 216 60 HOH HOH . D 4 HOH X 58 217 62 HOH HOH . D 4 HOH X 59 218 63 HOH HOH . D 4 HOH X 60 219 64 HOH HOH . D 4 HOH X 61 220 66 HOH HOH . D 4 HOH X 62 221 67 HOH HOH . D 4 HOH X 63 222 68 HOH HOH . D 4 HOH X 64 223 69 HOH HOH . D 4 HOH X 65 224 70 HOH HOH . D 4 HOH X 66 225 71 HOH HOH . D 4 HOH X 67 226 72 HOH HOH . D 4 HOH X 68 227 73 HOH HOH . D 4 HOH X 69 228 74 HOH HOH . D 4 HOH X 70 229 75 HOH HOH . D 4 HOH X 71 230 76 HOH HOH . D 4 HOH X 72 231 77 HOH HOH . D 4 HOH X 73 232 78 HOH HOH . D 4 HOH X 74 233 80 HOH HOH . D 4 HOH X 75 234 81 HOH HOH . D 4 HOH X 76 235 82 HOH HOH . D 4 HOH X 77 236 83 HOH HOH . D 4 HOH X 78 237 84 HOH HOH . D 4 HOH X 79 238 85 HOH HOH . D 4 HOH X 80 239 86 HOH HOH . D 4 HOH X 81 240 88 HOH HOH . D 4 HOH X 82 241 89 HOH HOH . D 4 HOH X 83 242 92 HOH HOH . D 4 HOH X 84 243 94 HOH HOH . D 4 HOH X 85 244 95 HOH HOH . D 4 HOH X 86 245 96 HOH HOH . D 4 HOH X 87 246 97 HOH HOH . D 4 HOH X 88 247 99 HOH HOH . D 4 HOH X 89 248 100 HOH HOH . D 4 HOH X 90 249 101 HOH HOH . D 4 HOH X 91 250 103 HOH HOH . D 4 HOH X 92 251 104 HOH HOH . D 4 HOH X 93 252 105 HOH HOH . D 4 HOH X 94 253 106 HOH HOH . D 4 HOH X 95 254 107 HOH HOH . D 4 HOH X 96 255 108 HOH HOH . D 4 HOH X 97 256 109 HOH HOH . D 4 HOH X 98 257 113 HOH HOH . D 4 HOH X 99 258 115 HOH HOH . D 4 HOH X 100 259 117 HOH HOH . D 4 HOH X 101 260 120 HOH HOH . D 4 HOH X 102 261 123 HOH HOH . D 4 HOH X 103 262 124 HOH HOH . D 4 HOH X 104 263 126 HOH HOH . D 4 HOH X 105 264 127 HOH HOH . D 4 HOH X 106 265 129 HOH HOH . D 4 HOH X 107 266 130 HOH HOH . D 4 HOH X 108 267 132 HOH HOH . D 4 HOH X 109 268 137 HOH HOH . D 4 HOH X 110 269 140 HOH HOH . D 4 HOH X 111 270 141 HOH HOH . D 4 HOH X 112 271 144 HOH HOH . D 4 HOH X 113 272 145 HOH HOH . D 4 HOH X 114 273 146 HOH HOH . D 4 HOH X 115 274 150 HOH HOH . D 4 HOH X 116 275 151 HOH HOH . D 4 HOH X 117 276 152 HOH HOH . D 4 HOH X 118 277 153 HOH HOH . D 4 HOH X 119 278 154 HOH HOH . D 4 HOH X 120 279 155 HOH HOH . D 4 HOH X 121 280 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 52V . . . C 3 -27.068 -10.288 40.474 1 15.7 ? C1 52V 158 X 1 HETATM 2 C C2 52V . . . C 3 -34.284 -16.839 39.275 1 25.21 ? C2 52V 158 X 1 HETATM 3 C C3 52V . . . C 3 -27.026 -7.971 40.756 1 14.88 ? C3 52V 158 X 1 HETATM 4 C C6 52V . . . C 3 -28.106 -10.384 41.39 1 15.23 ? C6 52V 158 X 1 HETATM 5 C C12 52V . . . C 3 -29.702 -14.086 42.253 1 17.78 ? C12 52V 158 X 1 HETATM 6 C C13 52V . . . C 3 -29.817 -14.298 43.757 1 17.82 ? C13 52V 158 X 1 HETATM 7 C C14 52V . . . C 3 -31.103 -14.115 41.609 1 22.05 ? C14 52V 158 X 1 HETATM 8 C C15 52V . . . C 3 -31.435 -15.235 40.844 1 23.91 ? C15 52V 158 X 1 HETATM 9 C C16 52V . . . C 3 -32.681 -15.34 40.233 1 24.44 ? C16 52V 158 X 1 HETATM 10 C C17 52V . . . C 3 -33.611 -14.294 40.384 1 23.48 ? C17 52V 158 X 1 HETATM 11 C C18 52V . . . C 3 -33.313 -13.145 41.152 1 26.16 ? C18 52V 158 X 1 HETATM 12 C C26 52V . . . C 3 -36.013 -13.697 42.286 1 28.96 ? C26 52V 158 X 1 HETATM 13 C C20 52V . . . C 3 -35.565 -12.33 41.797 1 28.28 ? C20 52V 158 X 1 HETATM 14 C C21 52V . . . C 3 -36.503 -11.298 41.908 1 29.12 ? C21 52V 158 X 1 HETATM 15 C C22 52V . . . C 3 -36.206 -10.002 41.495 1 28.07 ? C22 52V 158 X 1 HETATM 16 C C23 52V . . . C 3 -34.947 -9.752 40.97 1 28.91 ? C23 52V 158 X 1 HETATM 17 C C24 52V . . . C 3 -33.998 -10.778 40.862 1 28.33 ? C24 52V 158 X 1 HETATM 18 C C27 52V . . . C 3 -32.656 -10.375 40.27 1 28.62 ? C27 52V 158 X 1 HETATM 19 C C25 52V . . . C 3 -34.276 -12.1 41.281 1 25.63 ? C25 52V 158 X 1 HETATM 20 C C19 52V . . . C 3 -32.04 -13.072 41.764 1 23.32 ? C19 52V 158 X 1 HETATM 21 O O17 52V . . . C 3 -32.909 -16.478 39.497 1 24.51 ? O17 52V 158 X 1 HETATM 22 C C11 52V . . . C 3 -29.122 -12.771 41.953 1 16.55 ? C11 52V 158 X 1 HETATM 23 C C10 52V . . . C 3 -28.662 -11.661 41.701 1 16.23 ? C10 52V 158 X 1 HETATM 24 C C5 52V . . . C 3 -28.582 -9.217 41.983 1 15.25 ? C5 52V 158 X 1 HETATM 25 C C8 52V . . . C 3 -29.726 -9.261 42.994 1 14.67 ? C8 52V 158 X 1 HETATM 26 N N4 52V . . . C 3 -28.031 -8.033 41.647 1 14.71 ? N4 52V 158 X 1 HETATM 27 N N7 52V . . . C 3 -26.483 -6.811 40.426 1 14.8 ? N7 52V 158 X 1 HETATM 28 N N2 52V . . . C 3 -26.567 -9.077 40.176 1 15.13 ? N2 52V 158 X 1 HETATM 29 N N9 52V . . . C 3 -26.562 -11.368 39.873 1 14.4 ? N9 52V 158 X 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #