data_3F0S # _model_server_result.job_id 9UkVPS91Ig7FCJFK3omikw _model_server_result.datetime_utc '2024-12-01 02:02:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":158}' # _entry.id 3F0S # _exptl.entry_id 3F0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5-[(3R)-3-(5-methoxy-3',5'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F0S _cell.length_a 78.958 _cell.length_b 78.958 _cell.length_c 107.422 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H26 N4 O' _chem_comp.formula_weight 386.489 _chem_comp.id 53T _chem_comp.mon_nstd_flag . _chem_comp.name "5-[(3R)-3-(5-methoxy-3',5'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C1 53T doub 1 n y N2 C3 53T sing 2 n y C8 C5 53T sing 3 n n C10 C11 53T trip 4 n n C10 C6 53T sing 5 n n C11 C12 53T sing 6 n n C12 C13 53T sing 7 n n C12 C14 53T sing 8 n n C1 C6 53T sing 9 n y C1 N9 53T sing 10 n n C2 O17 53T sing 11 n n C3 N4 53T doub 12 n y C3 N7 53T sing 13 n n C5 C6 53T doub 14 n y C5 N4 53T sing 15 n y C26 C21 53T sing 16 n n C21 C20 53T doub 17 n y C21 C22 53T sing 18 n y C20 C25 53T sing 19 n y C22 C23 53T doub 20 n y C23 C27 53T sing 21 n n C23 C24 53T sing 22 n y C24 C25 53T doub 23 n y C25 C18 53T sing 24 n y C18 C19 53T doub 25 n y C18 C17 53T sing 26 n y C19 C14 53T sing 27 n y C17 C16 53T doub 28 n y C16 O17 53T sing 29 n n C16 C15 53T sing 30 n y C15 C14 53T doub 31 n y C8 H8 53T sing 32 n n C8 H8A 53T sing 33 n n C8 H8B 53T sing 34 n n C12 H12 53T sing 35 n n C13 H13 53T sing 36 n n C13 H13A 53T sing 37 n n C13 H13B 53T sing 38 n n C2 H2 53T sing 39 n n C2 H2A 53T sing 40 n n C2 H2B 53T sing 41 n n C26 H26 53T sing 42 n n C26 H26A 53T sing 43 n n C26 H26B 53T sing 44 n n C20 H20 53T sing 45 n n C22 H22 53T sing 46 n n C27 H27 53T sing 47 n n C27 H27A 53T sing 48 n n C27 H27B 53T sing 49 n n C24 H24 53T sing 50 n n C19 H19 53T sing 51 n n C17 H17 53T sing 52 n n C15 H15 53T sing 53 n n N7 HN7 53T sing 54 n n N7 HN7A 53T sing 55 n n N9 HN9 53T sing 56 n n N9 HN9A 53T sing 57 n n # _atom_sites.entry_id 3F0S _atom_sites.fract_transf_matrix[1][1] 0.012665 _atom_sites.fract_transf_matrix[1][2] 0.007312 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 207 207 NDP NAP . C 3 53T X 1 158 1 53T 53T . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 53T . . . C 3 -26.616 -9.138 39.524 1 16.06 ? N2 53T 158 X 1 HETATM 2 C C8 53T . . . C 3 -29.464 -9.304 42.69 1 15.41 ? C8 53T 158 X 1 HETATM 3 C C10 53T . . . C 3 -28.351 -11.68 41.553 1 20.29 ? C10 53T 158 X 1 HETATM 4 C C11 53T . . . C 3 -28.748 -12.726 42.053 1 23.21 ? C11 53T 158 X 1 HETATM 5 C C12 53T . . . C 3 -29.243 -13.951 42.686 1 24.89 ? C12 53T 158 X 1 HETATM 6 C C13 53T . . . C 3 -29.093 -15.108 41.727 1 26.44 ? C13 53T 158 X 1 HETATM 7 C C1 53T . . . C 3 -26.985 -10.35 39.985 1 16.62 ? C1 53T 158 X 1 HETATM 8 C C2 53T . . . C 3 -31.682 -15.216 46.808 1 25.76 ? C2 53T 158 X 1 HETATM 9 C C3 53T . . . C 3 -27.134 -8.011 40.061 1 16.35 ? C3 53T 158 X 1 HETATM 10 C C5 53T . . . C 3 -28.446 -9.247 41.554 1 17.24 ? C5 53T 158 X 1 HETATM 11 C C6 53T . . . C 3 -27.922 -10.426 41.018 1 18.01 ? C6 53T 158 X 1 HETATM 12 C C26 53T . . . C 3 -37.718 -12.296 41.286 1 31.05 ? C26 53T 158 X 1 HETATM 13 C C21 53T . . . C 3 -36.227 -11.914 41.254 1 32.25 ? C21 53T 158 X 1 HETATM 14 C C20 53T . . . C 3 -35.275 -12.609 42.024 1 31.1 ? C20 53T 158 X 1 HETATM 15 C C22 53T . . . C 3 -35.828 -10.848 40.438 1 32.05 ? C22 53T 158 X 1 HETATM 16 C C23 53T . . . C 3 -34.485 -10.468 40.376 1 32.04 ? C23 53T 158 X 1 HETATM 17 C C27 53T . . . C 3 -34.068 -9.294 39.47 1 30.28 ? C27 53T 158 X 1 HETATM 18 C C24 53T . . . C 3 -33.54 -11.165 41.151 1 32.17 ? C24 53T 158 X 1 HETATM 19 C C25 53T . . . C 3 -33.918 -12.241 41.979 1 31.02 ? C25 53T 158 X 1 HETATM 20 C C18 53T . . . C 3 -32.952 -12.927 42.747 1 30.29 ? C18 53T 158 X 1 HETATM 21 C C19 53T . . . C 3 -31.627 -13.073 42.3 1 27.72 ? C19 53T 158 X 1 HETATM 22 C C17 53T . . . C 3 -33.309 -13.489 43.992 1 30.19 ? C17 53T 158 X 1 HETATM 23 C C16 53T . . . C 3 -32.38 -14.182 44.788 1 29.12 ? C16 53T 158 X 1 HETATM 24 O O17 53T . . . C 3 -32.767 -14.72 46.001 1 27.96 ? O17 53T 158 X 1 HETATM 25 C C15 53T . . . C 3 -31.065 -14.312 44.325 1 28.1 ? C15 53T 158 X 1 HETATM 26 C C14 53T . . . C 3 -30.699 -13.769 43.097 1 26.98 ? C14 53T 158 X 1 HETATM 27 N N4 53T . . . C 3 -28.041 -8.063 41.06 1 16.84 ? N4 53T 158 X 1 HETATM 28 N N7 53T . . . C 3 -26.761 -6.826 39.605 1 16.12 ? N7 53T 158 X 1 HETATM 29 N N9 53T . . . C 3 -26.463 -11.455 39.469 1 15.14 ? N9 53T 158 X 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #