data_3F0S # _model_server_result.job_id hMDsBwsDQpQM7o6JIui7ag _model_server_result.datetime_utc '2024-11-28 08:44:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":207}' # _entry.id 3F0S # _exptl.entry_id 3F0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F0S _cell.length_a 78.958 _cell.length_b 78.958 _cell.length_c 107.422 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 279 n n PA O2A NDP sing 280 n n PA O5B NDP sing 281 n n PA O3 NDP sing 282 n n O2A HOA2 NDP sing 283 n n O5B C5B NDP sing 284 n n C5B C4B NDP sing 285 n n C5B H51A NDP sing 286 n n C5B H52A NDP sing 287 n n C4B O4B NDP sing 288 n n C4B C3B NDP sing 289 n n C4B H4B NDP sing 290 n n O4B C1B NDP sing 291 n n C3B O3B NDP sing 292 n n C3B C2B NDP sing 293 n n C3B H3B NDP sing 294 n n O3B HO3A NDP sing 295 n n C2B O2B NDP sing 296 n n C2B C1B NDP sing 297 n n C2B H2B NDP sing 298 n n O2B P2B NDP sing 299 n n C1B N9A NDP sing 300 n n C1B H1B NDP sing 301 n n N9A C8A NDP sing 302 n y N9A C4A NDP sing 303 n y C8A N7A NDP doub 304 n y C8A H8A NDP sing 305 n n N7A C5A NDP sing 306 n y C5A C6A NDP sing 307 n y C5A C4A NDP doub 308 n y C6A N6A NDP sing 309 n n C6A N1A NDP doub 310 n y N6A H61A NDP sing 311 n n N6A H62A NDP sing 312 n n N1A C2A NDP sing 313 n y C2A N3A NDP doub 314 n y C2A H2A NDP sing 315 n n N3A C4A NDP sing 316 n y O3 PN NDP sing 317 n n PN O1N NDP doub 318 n n PN O2N NDP sing 319 n n PN O5D NDP sing 320 n n O2N H21N NDP sing 321 n n O5D C5D NDP sing 322 n n C5D C4D NDP sing 323 n n C5D H51N NDP sing 324 n n C5D H52N NDP sing 325 n n C4D O4D NDP sing 326 n n C4D C3D NDP sing 327 n n C4D H4D NDP sing 328 n n O4D C1D NDP sing 329 n n C3D O3D NDP sing 330 n n C3D C2D NDP sing 331 n n C3D H3D NDP sing 332 n n O3D HO3N NDP sing 333 n n C2D O2D NDP sing 334 n n C2D C1D NDP sing 335 n n C2D H2D NDP sing 336 n n O2D HO2N NDP sing 337 n n C1D N1N NDP sing 338 n n C1D H1D NDP sing 339 n n N1N C2N NDP sing 340 n n N1N C6N NDP sing 341 n n C2N C3N NDP doub 342 n n C2N H2N NDP sing 343 n n C3N C7N NDP sing 344 n n C3N C4N NDP sing 345 n n C7N O7N NDP doub 346 n n C7N N7N NDP sing 347 n n N7N H71N NDP sing 348 n n N7N H72N NDP sing 349 n n C4N C5N NDP sing 350 n n C4N H41N NDP sing 351 n n C4N H42N NDP sing 352 n n C5N C6N NDP doub 353 n n C5N H5N NDP sing 354 n n C6N H6N NDP sing 355 n n P2B O1X NDP doub 356 n n P2B O2X NDP sing 357 n n P2B O3X NDP sing 358 n n O2X HOP2 NDP sing 359 n n O3X HOP3 NDP sing 360 n n # _atom_sites.entry_id 3F0S _atom_sites.fract_transf_matrix[1][1] 0.012665 _atom_sites.fract_transf_matrix[1][2] 0.007312 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 207 207 NDP NAP . C 3 53T X 1 158 1 53T 53T . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 -23.584 -21.731 41.944 1 22.11 ? PA NDP 207 X 1 HETATM 2 O O1A NDP . . . B 2 -22.443 -21.231 41.149 1 22.6 ? O1A NDP 207 X 1 HETATM 3 O O2A NDP . . . B 2 -24.794 -20.9 41.768 1 20.89 ? O2A NDP 207 X 1 HETATM 4 O O5B NDP . . . B 2 -23.889 -23.27 41.55 1 21.92 ? O5B NDP 207 X 1 HETATM 5 C C5B NDP . . . B 2 -22.877 -24.256 41.657 1 20.19 ? C5B NDP 207 X 1 HETATM 6 C C4B NDP . . . B 2 -23.351 -25.493 40.914 1 19.4 ? C4B NDP 207 X 1 HETATM 7 O O4B NDP . . . B 2 -23.482 -25.243 39.525 1 19.07 ? O4B NDP 207 X 1 HETATM 8 C C3B NDP . . . B 2 -22.407 -26.683 40.982 1 19.36 ? C3B NDP 207 X 1 HETATM 9 O O3B NDP . . . B 2 -22.515 -27.381 42.188 1 18.75 ? O3B NDP 207 X 1 HETATM 10 C C2B NDP . . . B 2 -22.891 -27.5 39.811 1 18.64 ? C2B NDP 207 X 1 HETATM 11 O O2B NDP . . . B 2 -24.172 -27.99 40.09 1 18.36 ? O2B NDP 207 X 1 HETATM 12 C C1B NDP . . . B 2 -23.12 -26.402 38.789 1 18.82 ? C1B NDP 207 X 1 HETATM 13 N N9A NDP . . . B 2 -21.883 -26.218 38.01 1 18.06 ? N9A NDP 207 X 1 HETATM 14 C C8A NDP . . . B 2 -20.961 -25.207 38.121 1 18.24 ? C8A NDP 207 X 1 HETATM 15 N N7A NDP . . . B 2 -19.964 -25.427 37.223 1 18.08 ? N7A NDP 207 X 1 HETATM 16 C C5A NDP . . . B 2 -20.239 -26.571 36.548 1 18.31 ? C5A NDP 207 X 1 HETATM 17 C C6A NDP . . . B 2 -19.58 -27.255 35.53 1 18.24 ? C6A NDP 207 X 1 HETATM 18 N N6A NDP . . . B 2 -18.421 -26.812 35.028 1 18.95 ? N6A NDP 207 X 1 HETATM 19 N N1A NDP . . . B 2 -20.137 -28.414 35.03 1 18.02 ? N1A NDP 207 X 1 HETATM 20 C C2A NDP . . . B 2 -21.334 -28.896 35.522 1 18.25 ? C2A NDP 207 X 1 HETATM 21 N N3A NDP . . . B 2 -21.978 -28.214 36.533 1 19.15 ? N3A NDP 207 X 1 HETATM 22 C C4A NDP . . . B 2 -21.44 -27.075 37.039 1 18.37 ? C4A NDP 207 X 1 HETATM 23 O O3 NDP . . . B 2 -23.204 -21.924 43.503 1 23.39 ? O3 NDP 207 X 1 HETATM 24 P PN NDP . . . B 2 -22.111 -21.451 44.582 1 23.17 ? PN NDP 207 X 1 HETATM 25 O O1N NDP . . . B 2 -21.533 -22.715 45.071 1 23.21 ? O1N NDP 207 X 1 HETATM 26 O O2N NDP . . . B 2 -21.224 -20.483 43.931 1 25.32 ? O2N NDP 207 X 1 HETATM 27 O O5D NDP . . . B 2 -22.978 -20.623 45.73 1 26.23 ? O5D NDP 207 X 1 HETATM 28 C C5D NDP . . . B 2 -24.357 -20.237 45.546 1 27.71 ? C5D NDP 207 X 1 HETATM 29 C C4D NDP . . . B 2 -24.792 -18.833 45.998 1 28.91 ? C4D NDP 207 X 1 HETATM 30 O O4D NDP . . . B 2 -24.523 -17.778 45.079 1 31.16 ? O4D NDP 207 X 1 HETATM 31 C C3D NDP . . . B 2 -26.301 -18.675 46.164 1 29.17 ? C3D NDP 207 X 1 HETATM 32 O O3D NDP . . . B 2 -26.701 -19.183 47.43 1 28.04 ? O3D NDP 207 X 1 HETATM 33 C C2D NDP . . . B 2 -26.62 -17.179 45.85 1 28.83 ? C2D NDP 207 X 1 HETATM 34 O O2D NDP . . . B 2 -26.968 -16.354 46.941 1 27.06 ? O2D NDP 207 X 1 HETATM 35 C C1D NDP . . . B 2 -25.306 -16.591 45.386 1 30.1 ? C1D NDP 207 X 1 HETATM 36 N N1N NDP . . . B 2 -25.323 -15.488 44.337 1 30.25 ? N1N NDP 207 X 1 HETATM 37 C C2N NDP . . . B 2 -25.53 -14.123 44.561 1 30.66 ? C2N NDP 207 X 1 HETATM 38 C C3N NDP . . . B 2 -25.47 -13.165 43.491 1 32.87 ? C3N NDP 207 X 1 HETATM 39 C C7N NDP . . . B 2 -25.316 -11.639 43.631 1 33.24 ? C7N NDP 207 X 1 HETATM 40 O O7N NDP . . . B 2 -25.014 -10.827 42.503 1 31.37 ? O7N NDP 207 X 1 HETATM 41 N N7N NDP . . . B 2 -25.461 -11.018 44.8 1 34.45 ? N7N NDP 207 X 1 HETATM 42 C C4N NDP . . . B 2 -25.19 -13.619 42.201 1 32.34 ? C4N NDP 207 X 1 HETATM 43 C C5N NDP . . . B 2 -24.972 -14.966 42.003 1 32.61 ? C5N NDP 207 X 1 HETATM 44 C C6N NDP . . . B 2 -25.035 -15.869 43.06 1 31.24 ? C6N NDP 207 X 1 HETATM 45 P P2B NDP . . . B 2 -24.469 -29.493 40.577 1 19.92 ? P2B NDP 207 X 1 HETATM 46 O O1X NDP . . . B 2 -23.81 -29.576 41.933 1 18 ? O1X NDP 207 X 1 HETATM 47 O O2X NDP . . . B 2 -25.975 -29.723 40.711 1 18.15 ? O2X NDP 207 X 1 HETATM 48 O O3X NDP . . . B 2 -23.914 -30.533 39.609 1 16.52 ? O3X NDP 207 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 48 #