data_3F0U # _model_server_result.job_id 8Qt-HjWWjyyPvPKc7ytFbQ _model_server_result.datetime_utc '2024-12-02 04:31:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f0u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":158}' # _entry.id 3F0U # _exptl.entry_id 3F0U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(3R)-3-(5-methoxybiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F0U _cell.length_a 79.134 _cell.length_b 79.134 _cell.length_c 109.169 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F0U _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H22 N4 O' _chem_comp.formula_weight 358.436 _chem_comp.id 53R _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(3R)-3-(5-methoxybiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 53R doub 1 n y C20 C25 53R sing 2 n y C21 C22 53R sing 3 n y C22 C23 53R doub 4 n y C23 C24 53R sing 5 n y C24 C25 53R doub 6 n y C25 C18 53R sing 7 n y C18 C19 53R doub 8 n y C18 C17 53R sing 9 n y C19 C14 53R sing 10 n y C17 C16 53R doub 11 n y C16 O17 53R sing 12 n n C16 C15 53R sing 13 n y O17 C2 53R sing 14 n n C15 C14 53R doub 15 n y C14 C12 53R sing 16 n n C12 C13 53R sing 17 n n C12 C11 53R sing 18 n n C11 C10 53R trip 19 n n C10 C6 53R sing 20 n n C6 C5 53R doub 21 n y C6 C1 53R sing 22 n y C5 C8 53R sing 23 n n C5 N4 53R sing 24 n y N4 C3 53R doub 25 n y C3 N7 53R sing 26 n n C3 N2 53R sing 27 n y N2 C1 53R doub 28 n y C1 N9 53R sing 29 n n C20 H20 53R sing 30 n n C21 H21 53R sing 31 n n C22 H22 53R sing 32 n n C23 H23 53R sing 33 n n C24 H24 53R sing 34 n n C19 H19 53R sing 35 n n C17 H17 53R sing 36 n n C2 H2 53R sing 37 n n C2 H2A 53R sing 38 n n C2 H2B 53R sing 39 n n C15 H15 53R sing 40 n n C12 H12 53R sing 41 n n C13 H13 53R sing 42 n n C13 H13A 53R sing 43 n n C13 H13B 53R sing 44 n n C8 H8 53R sing 45 n n C8 H8A 53R sing 46 n n C8 H8B 53R sing 47 n n N7 HN7 53R sing 48 n n N7 HN7A 53R sing 49 n n N9 HN9 53R sing 50 n n N9 HN9A 53R sing 51 n n # _atom_sites.entry_id 3F0U _atom_sites.fract_transf_matrix[1][1] 0.012637 _atom_sites.fract_transf_matrix[1][2] 0.007296 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 207 207 NDP NAP . C 3 53R X 1 158 1 53R 53R . D 4 HOH X 1 159 159 HOH HOH . D 4 HOH X 2 160 160 HOH HOH . D 4 HOH X 3 161 161 HOH HOH . D 4 HOH X 4 162 162 HOH HOH . D 4 HOH X 5 163 1 HOH HOH . D 4 HOH X 6 164 2 HOH HOH . D 4 HOH X 7 165 3 HOH HOH . D 4 HOH X 8 166 4 HOH HOH . D 4 HOH X 9 167 5 HOH HOH . D 4 HOH X 10 168 6 HOH HOH . D 4 HOH X 11 169 7 HOH HOH . D 4 HOH X 12 170 8 HOH HOH . D 4 HOH X 13 171 9 HOH HOH . D 4 HOH X 14 172 10 HOH HOH . D 4 HOH X 15 173 11 HOH HOH . D 4 HOH X 16 174 12 HOH HOH . D 4 HOH X 17 175 13 HOH HOH . D 4 HOH X 18 176 14 HOH HOH . D 4 HOH X 19 177 15 HOH HOH . D 4 HOH X 20 178 16 HOH HOH . D 4 HOH X 21 179 17 HOH HOH . D 4 HOH X 22 180 18 HOH HOH . D 4 HOH X 23 181 19 HOH HOH . D 4 HOH X 24 182 20 HOH HOH . D 4 HOH X 25 183 21 HOH HOH . D 4 HOH X 26 184 22 HOH HOH . D 4 HOH X 27 185 23 HOH HOH . D 4 HOH X 28 186 24 HOH HOH . D 4 HOH X 29 187 25 HOH HOH . D 4 HOH X 30 188 26 HOH HOH . D 4 HOH X 31 189 27 HOH HOH . D 4 HOH X 32 190 28 HOH HOH . D 4 HOH X 33 191 29 HOH HOH . D 4 HOH X 34 192 31 HOH HOH . D 4 HOH X 35 193 32 HOH HOH . D 4 HOH X 36 194 33 HOH HOH . D 4 HOH X 37 195 34 HOH HOH . D 4 HOH X 38 196 35 HOH HOH . D 4 HOH X 39 197 36 HOH HOH . D 4 HOH X 40 198 37 HOH HOH . D 4 HOH X 41 199 38 HOH HOH . D 4 HOH X 42 200 39 HOH HOH . D 4 HOH X 43 201 40 HOH HOH . D 4 HOH X 44 202 42 HOH HOH . D 4 HOH X 45 203 44 HOH HOH . D 4 HOH X 46 204 45 HOH HOH . D 4 HOH X 47 205 46 HOH HOH . D 4 HOH X 48 206 48 HOH HOH . D 4 HOH X 49 208 49 HOH HOH . D 4 HOH X 50 209 50 HOH HOH . D 4 HOH X 51 210 51 HOH HOH . D 4 HOH X 52 211 53 HOH HOH . D 4 HOH X 53 212 54 HOH HOH . D 4 HOH X 54 213 55 HOH HOH . D 4 HOH X 55 214 56 HOH HOH . D 4 HOH X 56 215 57 HOH HOH . D 4 HOH X 57 216 58 HOH HOH . D 4 HOH X 58 217 59 HOH HOH . D 4 HOH X 59 218 60 HOH HOH . D 4 HOH X 60 219 61 HOH HOH . D 4 HOH X 61 220 62 HOH HOH . D 4 HOH X 62 221 63 HOH HOH . D 4 HOH X 63 222 64 HOH HOH . D 4 HOH X 64 223 66 HOH HOH . D 4 HOH X 65 224 67 HOH HOH . D 4 HOH X 66 225 68 HOH HOH . D 4 HOH X 67 226 69 HOH HOH . D 4 HOH X 68 227 70 HOH HOH . D 4 HOH X 69 228 71 HOH HOH . D 4 HOH X 70 229 72 HOH HOH . D 4 HOH X 71 230 73 HOH HOH . D 4 HOH X 72 231 74 HOH HOH . D 4 HOH X 73 232 75 HOH HOH . D 4 HOH X 74 233 76 HOH HOH . D 4 HOH X 75 234 77 HOH HOH . D 4 HOH X 76 235 78 HOH HOH . D 4 HOH X 77 236 79 HOH HOH . D 4 HOH X 78 237 80 HOH HOH . D 4 HOH X 79 238 81 HOH HOH . D 4 HOH X 80 239 82 HOH HOH . D 4 HOH X 81 240 83 HOH HOH . D 4 HOH X 82 241 85 HOH HOH . D 4 HOH X 83 242 86 HOH HOH . D 4 HOH X 84 243 87 HOH HOH . D 4 HOH X 85 244 88 HOH HOH . D 4 HOH X 86 245 89 HOH HOH . D 4 HOH X 87 246 90 HOH HOH . D 4 HOH X 88 247 91 HOH HOH . D 4 HOH X 89 248 92 HOH HOH . D 4 HOH X 90 249 93 HOH HOH . D 4 HOH X 91 250 94 HOH HOH . D 4 HOH X 92 251 95 HOH HOH . D 4 HOH X 93 252 96 HOH HOH . D 4 HOH X 94 253 97 HOH HOH . D 4 HOH X 95 254 98 HOH HOH . D 4 HOH X 96 255 100 HOH HOH . D 4 HOH X 97 256 101 HOH HOH . D 4 HOH X 98 257 102 HOH HOH . D 4 HOH X 99 258 103 HOH HOH . D 4 HOH X 100 259 104 HOH HOH . D 4 HOH X 101 260 105 HOH HOH . D 4 HOH X 102 261 106 HOH HOH . D 4 HOH X 103 262 107 HOH HOH . D 4 HOH X 104 263 108 HOH HOH . D 4 HOH X 105 264 109 HOH HOH . D 4 HOH X 106 265 110 HOH HOH . D 4 HOH X 107 266 111 HOH HOH . D 4 HOH X 108 267 112 HOH HOH . D 4 HOH X 109 268 113 HOH HOH . D 4 HOH X 110 269 114 HOH HOH . D 4 HOH X 111 270 116 HOH HOH . D 4 HOH X 112 271 117 HOH HOH . D 4 HOH X 113 272 118 HOH HOH . D 4 HOH X 114 273 119 HOH HOH . D 4 HOH X 115 274 120 HOH HOH . D 4 HOH X 116 275 121 HOH HOH . D 4 HOH X 117 276 122 HOH HOH . D 4 HOH X 118 277 123 HOH HOH . D 4 HOH X 119 278 125 HOH HOH . D 4 HOH X 120 279 126 HOH HOH . D 4 HOH X 121 280 127 HOH HOH . D 4 HOH X 122 281 128 HOH HOH . D 4 HOH X 123 282 129 HOH HOH . D 4 HOH X 124 283 130 HOH HOH . D 4 HOH X 125 284 131 HOH HOH . D 4 HOH X 126 285 133 HOH HOH . D 4 HOH X 127 286 135 HOH HOH . D 4 HOH X 128 287 136 HOH HOH . D 4 HOH X 129 288 138 HOH HOH . D 4 HOH X 130 289 139 HOH HOH . D 4 HOH X 131 290 140 HOH HOH . D 4 HOH X 132 291 141 HOH HOH . D 4 HOH X 133 292 142 HOH HOH . D 4 HOH X 134 293 143 HOH HOH . D 4 HOH X 135 294 144 HOH HOH . D 4 HOH X 136 295 145 HOH HOH . D 4 HOH X 137 296 147 HOH HOH . D 4 HOH X 138 297 148 HOH HOH . D 4 HOH X 139 298 149 HOH HOH . D 4 HOH X 140 299 150 HOH HOH . D 4 HOH X 141 300 152 HOH HOH . D 4 HOH X 142 301 153 HOH HOH . D 4 HOH X 143 302 154 HOH HOH . D 4 HOH X 144 303 155 HOH HOH . D 4 HOH X 145 304 156 HOH HOH . D 4 HOH X 146 305 157 HOH HOH . D 4 HOH X 147 306 158 HOH HOH . D 4 HOH X 148 307 1 HOH HOH . D 4 HOH X 149 308 2 HOH HOH . D 4 HOH X 150 309 3 HOH HOH . D 4 HOH X 151 310 4 HOH HOH . D 4 HOH X 152 311 5 HOH HOH . D 4 HOH X 153 312 6 HOH HOH . D 4 HOH X 154 313 7 HOH HOH . D 4 HOH X 155 314 8 HOH HOH . D 4 HOH X 156 315 9 HOH HOH . D 4 HOH X 157 316 10 HOH HOH . D 4 HOH X 158 317 1 HOH HOH . D 4 HOH X 159 318 318 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 53R . . . C 3 -33.687 -10.708 40.483 1 30.15 ? C20 53R 158 X 1 HETATM 2 C C21 53R . . . C 3 -34.455 -9.543 40.466 1 31.51 ? C21 53R 158 X 1 HETATM 3 C C22 53R . . . C 3 -35.815 -9.612 40.777 1 30.71 ? C22 53R 158 X 1 HETATM 4 C C23 53R . . . C 3 -36.397 -10.842 41.102 1 31.6 ? C23 53R 158 X 1 HETATM 5 C C24 53R . . . C 3 -35.632 -12.014 41.116 1 31.47 ? C24 53R 158 X 1 HETATM 6 C C25 53R . . . C 3 -34.264 -11.951 40.796 1 28.66 ? C25 53R 158 X 1 HETATM 7 C C18 53R . . . C 3 -33.455 -13.098 40.822 1 28.94 ? C18 53R 158 X 1 HETATM 8 C C19 53R . . . C 3 -32.309 -13.023 41.608 1 27.19 ? C19 53R 158 X 1 HETATM 9 C C17 53R . . . C 3 -33.726 -14.3 40.138 1 27.49 ? C17 53R 158 X 1 HETATM 10 C C16 53R . . . C 3 -32.849 -15.404 40.251 1 27.27 ? C16 53R 158 X 1 HETATM 11 O O17 53R . . . C 3 -33.087 -16.58 39.557 1 29.08 ? O17 53R 158 X 1 HETATM 12 C C2 53R . . . C 3 -33.798 -17.594 40.28 1 30.77 ? C2 53R 158 X 1 HETATM 13 C C15 53R . . . C 3 -31.691 -15.289 41.04 1 27.26 ? C15 53R 158 X 1 HETATM 14 C C14 53R . . . C 3 -31.421 -14.083 41.722 1 26.51 ? C14 53R 158 X 1 HETATM 15 C C12 53R . . . C 3 -30.213 -13.797 42.67 1 22.34 ? C12 53R 158 X 1 HETATM 16 C C13 53R . . . C 3 -29.457 -15.009 43.166 1 25.54 ? C13 53R 158 X 1 HETATM 17 C C11 53R . . . C 3 -29.334 -12.728 42.115 1 20.49 ? C11 53R 158 X 1 HETATM 18 C C10 53R . . . C 3 -28.719 -11.731 41.771 1 19.44 ? C10 53R 158 X 1 HETATM 19 C C6 53R . . . C 3 -28.106 -10.465 41.477 1 17.48 ? C6 53R 158 X 1 HETATM 20 C C5 53R . . . C 3 -28.612 -9.298 42.055 1 17.88 ? C5 53R 158 X 1 HETATM 21 C C8 53R . . . C 3 -29.808 -9.308 43.023 1 18.78 ? C8 53R 158 X 1 HETATM 22 N N4 53R . . . C 3 -28.036 -8.111 41.784 1 16.67 ? N4 53R 158 X 1 HETATM 23 C C3 53R . . . C 3 -27.008 -8.054 40.925 1 17.41 ? C3 53R 158 X 1 HETATM 24 N N7 53R . . . C 3 -26.488 -6.867 40.666 1 17.46 ? N7 53R 158 X 1 HETATM 25 N N2 53R . . . C 3 -26.498 -9.155 40.34 1 16.77 ? N2 53R 158 X 1 HETATM 26 C C1 53R . . . C 3 -27.029 -10.376 40.596 1 17.14 ? C1 53R 158 X 1 HETATM 27 N N9 53R . . . C 3 -26.506 -11.459 40.032 1 16.53 ? N9 53R 158 X 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #