data_3F0U # _model_server_result.job_id gnM3acEK54TOh1b-7IBGNg _model_server_result.datetime_utc '2024-11-05 03:25:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f0u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":207}' # _entry.id 3F0U # _exptl.entry_id 3F0U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F0U _cell.length_a 79.134 _cell.length_b 79.134 _cell.length_c 109.169 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F0U _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 275 n n PA O2A NDP sing 276 n n PA O5B NDP sing 277 n n PA O3 NDP sing 278 n n O2A HOA2 NDP sing 279 n n O5B C5B NDP sing 280 n n C5B C4B NDP sing 281 n n C5B H51A NDP sing 282 n n C5B H52A NDP sing 283 n n C4B O4B NDP sing 284 n n C4B C3B NDP sing 285 n n C4B H4B NDP sing 286 n n O4B C1B NDP sing 287 n n C3B O3B NDP sing 288 n n C3B C2B NDP sing 289 n n C3B H3B NDP sing 290 n n O3B HO3A NDP sing 291 n n C2B O2B NDP sing 292 n n C2B C1B NDP sing 293 n n C2B H2B NDP sing 294 n n O2B P2B NDP sing 295 n n C1B N9A NDP sing 296 n n C1B H1B NDP sing 297 n n N9A C8A NDP sing 298 n y N9A C4A NDP sing 299 n y C8A N7A NDP doub 300 n y C8A H8A NDP sing 301 n n N7A C5A NDP sing 302 n y C5A C6A NDP sing 303 n y C5A C4A NDP doub 304 n y C6A N6A NDP sing 305 n n C6A N1A NDP doub 306 n y N6A H61A NDP sing 307 n n N6A H62A NDP sing 308 n n N1A C2A NDP sing 309 n y C2A N3A NDP doub 310 n y C2A H2A NDP sing 311 n n N3A C4A NDP sing 312 n y O3 PN NDP sing 313 n n PN O1N NDP doub 314 n n PN O2N NDP sing 315 n n PN O5D NDP sing 316 n n O2N H21N NDP sing 317 n n O5D C5D NDP sing 318 n n C5D C4D NDP sing 319 n n C5D H51N NDP sing 320 n n C5D H52N NDP sing 321 n n C4D O4D NDP sing 322 n n C4D C3D NDP sing 323 n n C4D H4D NDP sing 324 n n O4D C1D NDP sing 325 n n C3D O3D NDP sing 326 n n C3D C2D NDP sing 327 n n C3D H3D NDP sing 328 n n O3D HO3N NDP sing 329 n n C2D O2D NDP sing 330 n n C2D C1D NDP sing 331 n n C2D H2D NDP sing 332 n n O2D HO2N NDP sing 333 n n C1D N1N NDP sing 334 n n C1D H1D NDP sing 335 n n N1N C2N NDP sing 336 n n N1N C6N NDP sing 337 n n C2N C3N NDP doub 338 n n C2N H2N NDP sing 339 n n C3N C7N NDP sing 340 n n C3N C4N NDP sing 341 n n C7N O7N NDP doub 342 n n C7N N7N NDP sing 343 n n N7N H71N NDP sing 344 n n N7N H72N NDP sing 345 n n C4N C5N NDP sing 346 n n C4N H41N NDP sing 347 n n C4N H42N NDP sing 348 n n C5N C6N NDP doub 349 n n C5N H5N NDP sing 350 n n C6N H6N NDP sing 351 n n P2B O1X NDP doub 352 n n P2B O2X NDP sing 353 n n P2B O3X NDP sing 354 n n O2X HOP2 NDP sing 355 n n O3X HOP3 NDP sing 356 n n # _atom_sites.entry_id 3F0U _atom_sites.fract_transf_matrix[1][1] 0.012637 _atom_sites.fract_transf_matrix[1][2] 0.007296 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 207 207 NDP NAP . C 3 53R X 1 158 1 53R 53R . D 4 HOH X 1 159 159 HOH HOH . D 4 HOH X 2 160 160 HOH HOH . D 4 HOH X 3 161 161 HOH HOH . D 4 HOH X 4 162 162 HOH HOH . D 4 HOH X 5 163 1 HOH HOH . D 4 HOH X 6 164 2 HOH HOH . D 4 HOH X 7 165 3 HOH HOH . D 4 HOH X 8 166 4 HOH HOH . D 4 HOH X 9 167 5 HOH HOH . D 4 HOH X 10 168 6 HOH HOH . D 4 HOH X 11 169 7 HOH HOH . D 4 HOH X 12 170 8 HOH HOH . D 4 HOH X 13 171 9 HOH HOH . D 4 HOH X 14 172 10 HOH HOH . D 4 HOH X 15 173 11 HOH HOH . D 4 HOH X 16 174 12 HOH HOH . D 4 HOH X 17 175 13 HOH HOH . D 4 HOH X 18 176 14 HOH HOH . D 4 HOH X 19 177 15 HOH HOH . D 4 HOH X 20 178 16 HOH HOH . D 4 HOH X 21 179 17 HOH HOH . D 4 HOH X 22 180 18 HOH HOH . D 4 HOH X 23 181 19 HOH HOH . D 4 HOH X 24 182 20 HOH HOH . D 4 HOH X 25 183 21 HOH HOH . D 4 HOH X 26 184 22 HOH HOH . D 4 HOH X 27 185 23 HOH HOH . D 4 HOH X 28 186 24 HOH HOH . D 4 HOH X 29 187 25 HOH HOH . D 4 HOH X 30 188 26 HOH HOH . D 4 HOH X 31 189 27 HOH HOH . D 4 HOH X 32 190 28 HOH HOH . D 4 HOH X 33 191 29 HOH HOH . D 4 HOH X 34 192 31 HOH HOH . D 4 HOH X 35 193 32 HOH HOH . D 4 HOH X 36 194 33 HOH HOH . D 4 HOH X 37 195 34 HOH HOH . D 4 HOH X 38 196 35 HOH HOH . D 4 HOH X 39 197 36 HOH HOH . D 4 HOH X 40 198 37 HOH HOH . D 4 HOH X 41 199 38 HOH HOH . D 4 HOH X 42 200 39 HOH HOH . D 4 HOH X 43 201 40 HOH HOH . D 4 HOH X 44 202 42 HOH HOH . D 4 HOH X 45 203 44 HOH HOH . D 4 HOH X 46 204 45 HOH HOH . D 4 HOH X 47 205 46 HOH HOH . D 4 HOH X 48 206 48 HOH HOH . D 4 HOH X 49 208 49 HOH HOH . D 4 HOH X 50 209 50 HOH HOH . D 4 HOH X 51 210 51 HOH HOH . D 4 HOH X 52 211 53 HOH HOH . D 4 HOH X 53 212 54 HOH HOH . D 4 HOH X 54 213 55 HOH HOH . D 4 HOH X 55 214 56 HOH HOH . D 4 HOH X 56 215 57 HOH HOH . D 4 HOH X 57 216 58 HOH HOH . D 4 HOH X 58 217 59 HOH HOH . D 4 HOH X 59 218 60 HOH HOH . D 4 HOH X 60 219 61 HOH HOH . D 4 HOH X 61 220 62 HOH HOH . D 4 HOH X 62 221 63 HOH HOH . D 4 HOH X 63 222 64 HOH HOH . D 4 HOH X 64 223 66 HOH HOH . D 4 HOH X 65 224 67 HOH HOH . D 4 HOH X 66 225 68 HOH HOH . D 4 HOH X 67 226 69 HOH HOH . D 4 HOH X 68 227 70 HOH HOH . D 4 HOH X 69 228 71 HOH HOH . D 4 HOH X 70 229 72 HOH HOH . D 4 HOH X 71 230 73 HOH HOH . D 4 HOH X 72 231 74 HOH HOH . D 4 HOH X 73 232 75 HOH HOH . D 4 HOH X 74 233 76 HOH HOH . D 4 HOH X 75 234 77 HOH HOH . D 4 HOH X 76 235 78 HOH HOH . D 4 HOH X 77 236 79 HOH HOH . D 4 HOH X 78 237 80 HOH HOH . D 4 HOH X 79 238 81 HOH HOH . D 4 HOH X 80 239 82 HOH HOH . D 4 HOH X 81 240 83 HOH HOH . D 4 HOH X 82 241 85 HOH HOH . D 4 HOH X 83 242 86 HOH HOH . D 4 HOH X 84 243 87 HOH HOH . D 4 HOH X 85 244 88 HOH HOH . D 4 HOH X 86 245 89 HOH HOH . D 4 HOH X 87 246 90 HOH HOH . D 4 HOH X 88 247 91 HOH HOH . D 4 HOH X 89 248 92 HOH HOH . D 4 HOH X 90 249 93 HOH HOH . D 4 HOH X 91 250 94 HOH HOH . D 4 HOH X 92 251 95 HOH HOH . D 4 HOH X 93 252 96 HOH HOH . D 4 HOH X 94 253 97 HOH HOH . D 4 HOH X 95 254 98 HOH HOH . D 4 HOH X 96 255 100 HOH HOH . D 4 HOH X 97 256 101 HOH HOH . D 4 HOH X 98 257 102 HOH HOH . D 4 HOH X 99 258 103 HOH HOH . D 4 HOH X 100 259 104 HOH HOH . D 4 HOH X 101 260 105 HOH HOH . D 4 HOH X 102 261 106 HOH HOH . D 4 HOH X 103 262 107 HOH HOH . D 4 HOH X 104 263 108 HOH HOH . D 4 HOH X 105 264 109 HOH HOH . D 4 HOH X 106 265 110 HOH HOH . D 4 HOH X 107 266 111 HOH HOH . D 4 HOH X 108 267 112 HOH HOH . D 4 HOH X 109 268 113 HOH HOH . D 4 HOH X 110 269 114 HOH HOH . D 4 HOH X 111 270 116 HOH HOH . D 4 HOH X 112 271 117 HOH HOH . D 4 HOH X 113 272 118 HOH HOH . D 4 HOH X 114 273 119 HOH HOH . D 4 HOH X 115 274 120 HOH HOH . D 4 HOH X 116 275 121 HOH HOH . D 4 HOH X 117 276 122 HOH HOH . D 4 HOH X 118 277 123 HOH HOH . D 4 HOH X 119 278 125 HOH HOH . D 4 HOH X 120 279 126 HOH HOH . D 4 HOH X 121 280 127 HOH HOH . D 4 HOH X 122 281 128 HOH HOH . D 4 HOH X 123 282 129 HOH HOH . D 4 HOH X 124 283 130 HOH HOH . D 4 HOH X 125 284 131 HOH HOH . D 4 HOH X 126 285 133 HOH HOH . D 4 HOH X 127 286 135 HOH HOH . D 4 HOH X 128 287 136 HOH HOH . D 4 HOH X 129 288 138 HOH HOH . D 4 HOH X 130 289 139 HOH HOH . D 4 HOH X 131 290 140 HOH HOH . D 4 HOH X 132 291 141 HOH HOH . D 4 HOH X 133 292 142 HOH HOH . D 4 HOH X 134 293 143 HOH HOH . D 4 HOH X 135 294 144 HOH HOH . D 4 HOH X 136 295 145 HOH HOH . D 4 HOH X 137 296 147 HOH HOH . D 4 HOH X 138 297 148 HOH HOH . D 4 HOH X 139 298 149 HOH HOH . D 4 HOH X 140 299 150 HOH HOH . D 4 HOH X 141 300 152 HOH HOH . D 4 HOH X 142 301 153 HOH HOH . D 4 HOH X 143 302 154 HOH HOH . D 4 HOH X 144 303 155 HOH HOH . D 4 HOH X 145 304 156 HOH HOH . D 4 HOH X 146 305 157 HOH HOH . D 4 HOH X 147 306 158 HOH HOH . D 4 HOH X 148 307 1 HOH HOH . D 4 HOH X 149 308 2 HOH HOH . D 4 HOH X 150 309 3 HOH HOH . D 4 HOH X 151 310 4 HOH HOH . D 4 HOH X 152 311 5 HOH HOH . D 4 HOH X 153 312 6 HOH HOH . D 4 HOH X 154 313 7 HOH HOH . D 4 HOH X 155 314 8 HOH HOH . D 4 HOH X 156 315 9 HOH HOH . D 4 HOH X 157 316 10 HOH HOH . D 4 HOH X 158 317 1 HOH HOH . D 4 HOH X 159 318 318 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 -23.815 -21.559 43.015 1 17.67 ? PA NDP 207 X 1 HETATM 2 O O1A NDP . . . B 2 -22.633 -21.136 42.269 1 17.45 ? O1A NDP 207 X 1 HETATM 3 O O2A NDP . . . B 2 -25.056 -20.821 42.853 1 16.35 ? O2A NDP 207 X 1 HETATM 4 O O5B NDP . . . B 2 -24.147 -23.122 42.746 1 17.47 ? O5B NDP 207 X 1 HETATM 5 C C5B NDP . . . B 2 -23.123 -24.085 42.814 1 17.66 ? C5B NDP 207 X 1 HETATM 6 C C4B NDP . . . B 2 -23.689 -25.276 42.061 1 19.4 ? C4B NDP 207 X 1 HETATM 7 O O4B NDP . . . B 2 -23.705 -24.996 40.661 1 18.53 ? O4B NDP 207 X 1 HETATM 8 C C3B NDP . . . B 2 -22.873 -26.544 42.224 1 17.42 ? C3B NDP 207 X 1 HETATM 9 O O3B NDP . . . B 2 -23.057 -27.215 43.475 1 17.56 ? O3B NDP 207 X 1 HETATM 10 C C2B NDP . . . B 2 -23.321 -27.327 40.995 1 18.54 ? C2B NDP 207 X 1 HETATM 11 O O2B NDP . . . B 2 -24.632 -27.806 41.161 1 18 ? O2B NDP 207 X 1 HETATM 12 C C1B NDP . . . B 2 -23.443 -26.199 39.968 1 19.09 ? C1B NDP 207 X 1 HETATM 13 N N9A NDP . . . B 2 -22.192 -26.055 39.225 1 20.19 ? N9A NDP 207 X 1 HETATM 14 C C8A NDP . . . B 2 -21.259 -25.047 39.348 1 19.89 ? C8A NDP 207 X 1 HETATM 15 N N7A NDP . . . B 2 -20.259 -25.289 38.467 1 20.27 ? N7A NDP 207 X 1 HETATM 16 C C5A NDP . . . B 2 -20.544 -26.44 37.789 1 20.83 ? C5A NDP 207 X 1 HETATM 17 C C6A NDP . . . B 2 -19.888 -27.15 36.785 1 21.5 ? C6A NDP 207 X 1 HETATM 18 N N6A NDP . . . B 2 -18.714 -26.764 36.273 1 21.23 ? N6A NDP 207 X 1 HETATM 19 N N1A NDP . . . B 2 -20.463 -28.312 36.301 1 21.57 ? N1A NDP 207 X 1 HETATM 20 C C2A NDP . . . B 2 -21.678 -28.751 36.784 1 20.86 ? C2A NDP 207 X 1 HETATM 21 N N3A NDP . . . B 2 -22.324 -28.062 37.778 1 21.81 ? N3A NDP 207 X 1 HETATM 22 C C4A NDP . . . B 2 -21.763 -26.918 38.267 1 20.63 ? C4A NDP 207 X 1 HETATM 23 O O3 NDP . . . B 2 -23.548 -21.672 44.588 1 15.74 ? O3 NDP 207 X 1 HETATM 24 P PN NDP . . . B 2 -22.541 -20.968 45.629 1 20.41 ? PN NDP 207 X 1 HETATM 25 O O1N NDP . . . B 2 -22.758 -21.568 46.985 1 16.34 ? O1N NDP 207 X 1 HETATM 26 O O2N NDP . . . B 2 -21.221 -20.819 45.024 1 18.96 ? O2N NDP 207 X 1 HETATM 27 O O5D NDP . . . B 2 -23.197 -19.493 45.702 1 19.79 ? O5D NDP 207 X 1 HETATM 28 C C5D NDP . . . B 2 -24.457 -19.195 46.282 1 14.82 ? C5D NDP 207 X 1 HETATM 29 C C4D NDP . . . B 2 -24.499 -17.823 46.967 1 20.05 ? C4D NDP 207 X 1 HETATM 30 O O4D NDP . . . B 2 -24.335 -16.743 46.049 1 17.99 ? O4D NDP 207 X 1 HETATM 31 C C3D NDP . . . B 2 -25.856 -17.574 47.64 1 18.22 ? C3D NDP 207 X 1 HETATM 32 O O3D NDP . . . B 2 -25.667 -16.998 48.924 1 18.34 ? O3D NDP 207 X 1 HETATM 33 C C2D NDP . . . B 2 -26.569 -16.528 46.799 1 19.47 ? C2D NDP 207 X 1 HETATM 34 O O2D NDP . . . B 2 -27.413 -15.716 47.594 1 18.47 ? O2D NDP 207 X 1 HETATM 35 C C1D NDP . . . B 2 -25.354 -15.763 46.305 1 16.89 ? C1D NDP 207 X 1 HETATM 36 N N1N NDP . . . B 2 -25.554 -14.914 45.115 1 16.85 ? N1N NDP 207 X 1 HETATM 37 C C2N NDP . . . B 2 -25.306 -13.581 45.249 1 18.19 ? C2N NDP 207 X 1 HETATM 38 C C3N NDP . . . B 2 -25.437 -12.75 44.149 1 16.63 ? C3N NDP 207 X 1 HETATM 39 C C7N NDP . . . B 2 -25.086 -11.305 44.285 1 16.78 ? C7N NDP 207 X 1 HETATM 40 O O7N NDP . . . B 2 -24.954 -10.605 43.113 1 16.86 ? O7N NDP 207 X 1 HETATM 41 N N7N NDP . . . B 2 -24.906 -10.738 45.484 1 17.85 ? N7N NDP 207 X 1 HETATM 42 C C4N NDP . . . B 2 -25.828 -13.254 42.899 1 18.31 ? C4N NDP 207 X 1 HETATM 43 C C5N NDP . . . B 2 -26.078 -14.625 42.789 1 19.02 ? C5N NDP 207 X 1 HETATM 44 C C6N NDP . . . B 2 -25.918 -15.433 43.902 1 18.01 ? C6N NDP 207 X 1 HETATM 45 P P2B NDP . . . B 2 -24.946 -29.355 41.622 1 18.56 ? P2B NDP 207 X 1 HETATM 46 O O1X NDP . . . B 2 -24.372 -29.474 43.015 1 18.98 ? O1X NDP 207 X 1 HETATM 47 O O2X NDP . . . B 2 -26.438 -29.455 41.565 1 17.87 ? O2X NDP 207 X 1 HETATM 48 O O3X NDP . . . B 2 -24.223 -30.245 40.675 1 17.36 ? O3X NDP 207 X 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #