data_3F0V
#
_model_server_result.job_id            pnVHsEfDBMoktW-jCZ2u5Q 
_model_server_result.datetime_utc      '2024-12-02 21:16:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3f0v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":158}' 
#
_entry.id    3F0V 
#
_exptl.entry_id    3F0V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              386.489 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3F0V 
_cell.length_a            79.051 
_cell.length_b            79.051 
_cell.length_c            109.265 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3F0V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H26 N4 O' 
_chem_comp.formula_weight    386.489 
_chem_comp.id                52V 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N9 C1 52V sing 1 n n 
N2 C1 52V doub 2 n y 
C1 C6 52V sing 3 n y 
C2 O17 52V sing 4 n n 
C2 H2 52V sing 5 n n 
C2 H2A 52V sing 6 n n 
C2 H2B 52V sing 7 n n 
N2 C3 52V sing 8 n y 
N7 C3 52V sing 9 n n 
C3 N4 52V doub 10 n y 
C6 C10 52V sing 11 n n 
C6 C5 52V doub 12 n y 
C14 C12 52V sing 13 n n 
C11 C12 52V sing 14 n n 
C12 C13 52V sing 15 n n 
C12 H12 52V sing 16 n n 
C13 H13 52V sing 17 n n 
C13 H13A 52V sing 18 n n 
C13 H13B 52V sing 19 n n 
C15 C14 52V doub 20 n y 
C14 C19 52V sing 21 n y 
C16 C15 52V sing 22 n y 
C15 H15 52V sing 23 n n 
O17 C16 52V sing 24 n n 
C16 C17 52V doub 25 n y 
C17 C18 52V sing 26 n y 
C17 H17 52V sing 27 n n 
C18 C25 52V sing 28 n y 
C18 C19 52V doub 29 n y 
C20 C26 52V sing 30 n n 
C26 H26 52V sing 31 n n 
C26 H26A 52V sing 32 n n 
C26 H26B 52V sing 33 n n 
C25 C20 52V doub 34 n y 
C20 C21 52V sing 35 n y 
C22 C21 52V doub 36 n y 
C21 H21 52V sing 37 n n 
C23 C22 52V sing 38 n y 
C22 H22 52V sing 39 n n 
C24 C23 52V doub 40 n y 
C23 H23 52V sing 41 n n 
C27 C24 52V sing 42 n n 
C24 C25 52V sing 43 n y 
C27 H27 52V sing 44 n n 
C27 H27A 52V sing 45 n n 
C27 H27B 52V sing 46 n n 
C19 H19 52V sing 47 n n 
C10 C11 52V trip 48 n n 
N4 C5 52V sing 49 n y 
C5 C8 52V sing 50 n n 
C8 H8 52V sing 51 n n 
C8 H8A 52V sing 52 n n 
C8 H8B 52V sing 53 n n 
N7 HN7 52V sing 54 n n 
N7 HN7A 52V sing 55 n n 
N9 HN9 52V sing 56 n n 
N9 HN9A 52V sing 57 n n 
#
_atom_sites.entry_id                     3F0V 
_atom_sites.fract_transf_matrix[1][1]    0.01265 
_atom_sites.fract_transf_matrix[1][2]    0.007304 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014607 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009152 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP X 1 207 207 NDP NAP . 
C 3 52V X 1 158 1 52V 52V . 
D 4 HOH X 1 159 1 HOH HOH . 
D 4 HOH X 2 160 2 HOH HOH . 
D 4 HOH X 3 161 3 HOH HOH . 
D 4 HOH X 4 162 4 HOH HOH . 
D 4 HOH X 5 163 5 HOH HOH . 
D 4 HOH X 6 164 7 HOH HOH . 
D 4 HOH X 7 165 8 HOH HOH . 
D 4 HOH X 8 166 9 HOH HOH . 
D 4 HOH X 9 167 10 HOH HOH . 
D 4 HOH X 10 168 11 HOH HOH . 
D 4 HOH X 11 169 12 HOH HOH . 
D 4 HOH X 12 170 13 HOH HOH . 
D 4 HOH X 13 171 14 HOH HOH . 
D 4 HOH X 14 172 15 HOH HOH . 
D 4 HOH X 15 173 16 HOH HOH . 
D 4 HOH X 16 174 17 HOH HOH . 
D 4 HOH X 17 175 18 HOH HOH . 
D 4 HOH X 18 176 19 HOH HOH . 
D 4 HOH X 19 177 20 HOH HOH . 
D 4 HOH X 20 178 21 HOH HOH . 
D 4 HOH X 21 179 22 HOH HOH . 
D 4 HOH X 22 180 23 HOH HOH . 
D 4 HOH X 23 181 24 HOH HOH . 
D 4 HOH X 24 182 25 HOH HOH . 
D 4 HOH X 25 183 26 HOH HOH . 
D 4 HOH X 26 184 27 HOH HOH . 
D 4 HOH X 27 185 28 HOH HOH . 
D 4 HOH X 28 186 29 HOH HOH . 
D 4 HOH X 29 187 30 HOH HOH . 
D 4 HOH X 30 188 31 HOH HOH . 
D 4 HOH X 31 189 32 HOH HOH . 
D 4 HOH X 32 190 33 HOH HOH . 
D 4 HOH X 33 191 34 HOH HOH . 
D 4 HOH X 34 192 35 HOH HOH . 
D 4 HOH X 35 193 37 HOH HOH . 
D 4 HOH X 36 194 38 HOH HOH . 
D 4 HOH X 37 195 39 HOH HOH . 
D 4 HOH X 38 196 40 HOH HOH . 
D 4 HOH X 39 197 41 HOH HOH . 
D 4 HOH X 40 198 43 HOH HOH . 
D 4 HOH X 41 199 44 HOH HOH . 
D 4 HOH X 42 200 45 HOH HOH . 
D 4 HOH X 43 201 47 HOH HOH . 
D 4 HOH X 44 202 48 HOH HOH . 
D 4 HOH X 45 203 49 HOH HOH . 
D 4 HOH X 46 204 50 HOH HOH . 
D 4 HOH X 47 205 51 HOH HOH . 
D 4 HOH X 48 206 52 HOH HOH . 
D 4 HOH X 49 208 54 HOH HOH . 
D 4 HOH X 50 209 55 HOH HOH . 
D 4 HOH X 51 210 56 HOH HOH . 
D 4 HOH X 52 211 57 HOH HOH . 
D 4 HOH X 53 212 58 HOH HOH . 
D 4 HOH X 54 213 59 HOH HOH . 
D 4 HOH X 55 214 60 HOH HOH . 
D 4 HOH X 56 215 61 HOH HOH . 
D 4 HOH X 57 216 62 HOH HOH . 
D 4 HOH X 58 217 63 HOH HOH . 
D 4 HOH X 59 218 64 HOH HOH . 
D 4 HOH X 60 219 65 HOH HOH . 
D 4 HOH X 61 220 66 HOH HOH . 
D 4 HOH X 62 221 67 HOH HOH . 
D 4 HOH X 63 222 68 HOH HOH . 
D 4 HOH X 64 223 70 HOH HOH . 
D 4 HOH X 65 224 72 HOH HOH . 
D 4 HOH X 66 225 73 HOH HOH . 
D 4 HOH X 67 226 74 HOH HOH . 
D 4 HOH X 68 227 75 HOH HOH . 
D 4 HOH X 69 228 77 HOH HOH . 
D 4 HOH X 70 229 80 HOH HOH . 
D 4 HOH X 71 230 81 HOH HOH . 
D 4 HOH X 72 231 82 HOH HOH . 
D 4 HOH X 73 232 83 HOH HOH . 
D 4 HOH X 74 233 85 HOH HOH . 
D 4 HOH X 75 234 86 HOH HOH . 
D 4 HOH X 76 235 87 HOH HOH . 
D 4 HOH X 77 236 89 HOH HOH . 
D 4 HOH X 78 237 90 HOH HOH . 
D 4 HOH X 79 238 91 HOH HOH . 
D 4 HOH X 80 239 92 HOH HOH . 
D 4 HOH X 81 240 93 HOH HOH . 
D 4 HOH X 82 241 94 HOH HOH . 
D 4 HOH X 83 242 95 HOH HOH . 
D 4 HOH X 84 243 96 HOH HOH . 
D 4 HOH X 85 244 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 52V . . . C 3 -27.104 -10.384 40.677 1 24.09 ? C1 52V 158 X 1 
HETATM 2 C C2 52V . . . C 3 -34.148 -16.507 38.774 1 33.92 ? C2 52V 158 X 1 
HETATM 3 C C3 52V . . . C 3 -27.008 -8.078 40.986 1 24.24 ? C3 52V 158 X 1 
HETATM 4 C C6 52V . . . C 3 -28.162 -10.458 41.574 1 24.53 ? C6 52V 158 X 1 
HETATM 5 C C12 52V . . . C 3 -29.818 -14.15 42.373 1 26.66 ? C12 52V 158 X 1 
HETATM 6 C C13 52V . . . C 3 -29.905 -14.397 43.886 1 25.24 ? C13 52V 158 X 1 
HETATM 7 C C14 52V . . . C 3 -31.223 -14.184 41.754 1 30.27 ? C14 52V 158 X 1 
HETATM 8 C C15 52V . . . C 3 -31.591 -15.353 41.087 1 30.83 ? C15 52V 158 X 1 
HETATM 9 C C16 52V . . . C 3 -32.848 -15.444 40.509 1 31.95 ? C16 52V 158 X 1 
HETATM 10 C C17 52V . . . C 3 -33.742 -14.355 40.604 1 31.31 ? C17 52V 158 X 1 
HETATM 11 C C18 52V . . . C 3 -33.406 -13.162 41.275 1 33.97 ? C18 52V 158 X 1 
HETATM 12 C C26 52V . . . C 3 -32.743 -10.519 40.08 1 37.23 ? C26 52V 158 X 1 
HETATM 13 C C20 52V . . . C 3 -34.057 -10.81 40.793 1 36.99 ? C20 52V 158 X 1 
HETATM 14 C C21 52V . . . C 3 -34.979 -9.751 40.853 1 37.42 ? C21 52V 158 X 1 
HETATM 15 C C22 52V . . . C 3 -36.208 -9.905 41.483 1 36.02 ? C22 52V 158 X 1 
HETATM 16 C C23 52V . . . C 3 -36.508 -11.148 42.041 1 36.94 ? C23 52V 158 X 1 
HETATM 17 C C24 52V . . . C 3 -35.601 -12.214 41.971 1 36.41 ? C24 52V 158 X 1 
HETATM 18 C C27 52V . . . C 3 -36.048 -13.518 42.621 1 37.53 ? C27 52V 158 X 1 
HETATM 19 C C25 52V . . . C 3 -34.339 -12.08 41.348 1 33.91 ? C25 52V 158 X 1 
HETATM 20 C C19 52V . . . C 3 -32.12 -13.092 41.857 1 31.6 ? C19 52V 158 X 1 
HETATM 21 O O17 52V . . . C 3 -33.167 -16.621 39.867 1 33.03 ? O17 52V 158 X 1 
HETATM 22 C C11 52V . . . C 3 -29.221 -12.833 42.098 1 25.98 ? C11 52V 158 X 1 
HETATM 23 C C10 52V . . . C 3 -28.741 -11.727 41.864 1 24.83 ? C10 52V 158 X 1 
HETATM 24 C C5 52V . . . C 3 -28.615 -9.285 42.174 1 24.45 ? C5 52V 158 X 1 
HETATM 25 C C8 52V . . . C 3 -29.778 -9.292 43.152 1 24.13 ? C8 52V 158 X 1 
HETATM 26 N N4 52V . . . C 3 -28.021 -8.12 41.865 1 24.23 ? N4 52V 158 X 1 
HETATM 27 N N7 52V . . . C 3 -26.444 -6.919 40.683 1 24.47 ? N7 52V 158 X 1 
HETATM 28 N N2 52V . . . C 3 -26.557 -9.193 40.406 1 24.13 ? N2 52V 158 X 1 
HETATM 29 N N9 52V . . . C 3 -26.627 -11.479 40.094 1 23.65 ? N9 52V 158 X 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#