data_3F0V # _model_server_result.job_id jGuq38IIGDv7aNrCZMW_Wg _model_server_result.datetime_utc '2024-12-02 19:51:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":207}' # _entry.id 3F0V # _exptl.entry_id 3F0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F0V _cell.length_a 79.051 _cell.length_b 79.051 _cell.length_c 109.265 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 281 n n PA O2A NDP sing 282 n n PA O5B NDP sing 283 n n PA O3 NDP sing 284 n n O2A HOA2 NDP sing 285 n n O5B C5B NDP sing 286 n n C5B C4B NDP sing 287 n n C5B H51A NDP sing 288 n n C5B H52A NDP sing 289 n n C4B O4B NDP sing 290 n n C4B C3B NDP sing 291 n n C4B H4B NDP sing 292 n n O4B C1B NDP sing 293 n n C3B O3B NDP sing 294 n n C3B C2B NDP sing 295 n n C3B H3B NDP sing 296 n n O3B HO3A NDP sing 297 n n C2B O2B NDP sing 298 n n C2B C1B NDP sing 299 n n C2B H2B NDP sing 300 n n O2B P2B NDP sing 301 n n C1B N9A NDP sing 302 n n C1B H1B NDP sing 303 n n N9A C8A NDP sing 304 n y N9A C4A NDP sing 305 n y C8A N7A NDP doub 306 n y C8A H8A NDP sing 307 n n N7A C5A NDP sing 308 n y C5A C6A NDP sing 309 n y C5A C4A NDP doub 310 n y C6A N6A NDP sing 311 n n C6A N1A NDP doub 312 n y N6A H61A NDP sing 313 n n N6A H62A NDP sing 314 n n N1A C2A NDP sing 315 n y C2A N3A NDP doub 316 n y C2A H2A NDP sing 317 n n N3A C4A NDP sing 318 n y O3 PN NDP sing 319 n n PN O1N NDP doub 320 n n PN O2N NDP sing 321 n n PN O5D NDP sing 322 n n O2N H21N NDP sing 323 n n O5D C5D NDP sing 324 n n C5D C4D NDP sing 325 n n C5D H51N NDP sing 326 n n C5D H52N NDP sing 327 n n C4D O4D NDP sing 328 n n C4D C3D NDP sing 329 n n C4D H4D NDP sing 330 n n O4D C1D NDP sing 331 n n C3D O3D NDP sing 332 n n C3D C2D NDP sing 333 n n C3D H3D NDP sing 334 n n O3D HO3N NDP sing 335 n n C2D O2D NDP sing 336 n n C2D C1D NDP sing 337 n n C2D H2D NDP sing 338 n n O2D HO2N NDP sing 339 n n C1D N1N NDP sing 340 n n C1D H1D NDP sing 341 n n N1N C2N NDP sing 342 n n N1N C6N NDP sing 343 n n C2N C3N NDP doub 344 n n C2N H2N NDP sing 345 n n C3N C7N NDP sing 346 n n C3N C4N NDP sing 347 n n C7N O7N NDP doub 348 n n C7N N7N NDP sing 349 n n N7N H71N NDP sing 350 n n N7N H72N NDP sing 351 n n C4N C5N NDP sing 352 n n C4N H41N NDP sing 353 n n C4N H42N NDP sing 354 n n C5N C6N NDP doub 355 n n C5N H5N NDP sing 356 n n C6N H6N NDP sing 357 n n P2B O1X NDP doub 358 n n P2B O2X NDP sing 359 n n P2B O3X NDP sing 360 n n O2X HOP2 NDP sing 361 n n O3X HOP3 NDP sing 362 n n # _atom_sites.entry_id 3F0V _atom_sites.fract_transf_matrix[1][1] 0.01265 _atom_sites.fract_transf_matrix[1][2] 0.007304 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 207 207 NDP NAP . C 3 52V X 1 158 1 52V 52V . D 4 HOH X 1 159 1 HOH HOH . D 4 HOH X 2 160 2 HOH HOH . D 4 HOH X 3 161 3 HOH HOH . D 4 HOH X 4 162 4 HOH HOH . D 4 HOH X 5 163 5 HOH HOH . D 4 HOH X 6 164 7 HOH HOH . D 4 HOH X 7 165 8 HOH HOH . D 4 HOH X 8 166 9 HOH HOH . D 4 HOH X 9 167 10 HOH HOH . D 4 HOH X 10 168 11 HOH HOH . D 4 HOH X 11 169 12 HOH HOH . D 4 HOH X 12 170 13 HOH HOH . D 4 HOH X 13 171 14 HOH HOH . D 4 HOH X 14 172 15 HOH HOH . D 4 HOH X 15 173 16 HOH HOH . D 4 HOH X 16 174 17 HOH HOH . D 4 HOH X 17 175 18 HOH HOH . D 4 HOH X 18 176 19 HOH HOH . D 4 HOH X 19 177 20 HOH HOH . D 4 HOH X 20 178 21 HOH HOH . D 4 HOH X 21 179 22 HOH HOH . D 4 HOH X 22 180 23 HOH HOH . D 4 HOH X 23 181 24 HOH HOH . D 4 HOH X 24 182 25 HOH HOH . D 4 HOH X 25 183 26 HOH HOH . D 4 HOH X 26 184 27 HOH HOH . D 4 HOH X 27 185 28 HOH HOH . D 4 HOH X 28 186 29 HOH HOH . D 4 HOH X 29 187 30 HOH HOH . D 4 HOH X 30 188 31 HOH HOH . D 4 HOH X 31 189 32 HOH HOH . D 4 HOH X 32 190 33 HOH HOH . D 4 HOH X 33 191 34 HOH HOH . D 4 HOH X 34 192 35 HOH HOH . D 4 HOH X 35 193 37 HOH HOH . D 4 HOH X 36 194 38 HOH HOH . D 4 HOH X 37 195 39 HOH HOH . D 4 HOH X 38 196 40 HOH HOH . D 4 HOH X 39 197 41 HOH HOH . D 4 HOH X 40 198 43 HOH HOH . D 4 HOH X 41 199 44 HOH HOH . D 4 HOH X 42 200 45 HOH HOH . D 4 HOH X 43 201 47 HOH HOH . D 4 HOH X 44 202 48 HOH HOH . D 4 HOH X 45 203 49 HOH HOH . D 4 HOH X 46 204 50 HOH HOH . D 4 HOH X 47 205 51 HOH HOH . D 4 HOH X 48 206 52 HOH HOH . D 4 HOH X 49 208 54 HOH HOH . D 4 HOH X 50 209 55 HOH HOH . D 4 HOH X 51 210 56 HOH HOH . D 4 HOH X 52 211 57 HOH HOH . D 4 HOH X 53 212 58 HOH HOH . D 4 HOH X 54 213 59 HOH HOH . D 4 HOH X 55 214 60 HOH HOH . D 4 HOH X 56 215 61 HOH HOH . D 4 HOH X 57 216 62 HOH HOH . D 4 HOH X 58 217 63 HOH HOH . D 4 HOH X 59 218 64 HOH HOH . D 4 HOH X 60 219 65 HOH HOH . D 4 HOH X 61 220 66 HOH HOH . D 4 HOH X 62 221 67 HOH HOH . D 4 HOH X 63 222 68 HOH HOH . D 4 HOH X 64 223 70 HOH HOH . D 4 HOH X 65 224 72 HOH HOH . D 4 HOH X 66 225 73 HOH HOH . D 4 HOH X 67 226 74 HOH HOH . D 4 HOH X 68 227 75 HOH HOH . D 4 HOH X 69 228 77 HOH HOH . D 4 HOH X 70 229 80 HOH HOH . D 4 HOH X 71 230 81 HOH HOH . D 4 HOH X 72 231 82 HOH HOH . D 4 HOH X 73 232 83 HOH HOH . D 4 HOH X 74 233 85 HOH HOH . D 4 HOH X 75 234 86 HOH HOH . D 4 HOH X 76 235 87 HOH HOH . D 4 HOH X 77 236 89 HOH HOH . D 4 HOH X 78 237 90 HOH HOH . D 4 HOH X 79 238 91 HOH HOH . D 4 HOH X 80 239 92 HOH HOH . D 4 HOH X 81 240 93 HOH HOH . D 4 HOH X 82 241 94 HOH HOH . D 4 HOH X 83 242 95 HOH HOH . D 4 HOH X 84 243 96 HOH HOH . D 4 HOH X 85 244 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 -23.814 -21.532 43.146 1 21.37 ? PA NDP 207 X 1 HETATM 2 O O1A NDP . . . B 2 -22.671 -21.024 42.375 1 21.39 ? O1A NDP 207 X 1 HETATM 3 O O2A NDP . . . B 2 -25.05 -20.763 42.913 1 20.63 ? O2A NDP 207 X 1 HETATM 4 O O5B NDP . . . B 2 -24.081 -23.077 42.815 1 21.15 ? O5B NDP 207 X 1 HETATM 5 C C5B NDP . . . B 2 -23.094 -24.081 42.961 1 21.2 ? C5B NDP 207 X 1 HETATM 6 C C4B NDP . . . B 2 -23.642 -25.256 42.168 1 21.12 ? C4B NDP 207 X 1 HETATM 7 O O4B NDP . . . B 2 -23.658 -24.944 40.788 1 22.84 ? O4B NDP 207 X 1 HETATM 8 C C3B NDP . . . B 2 -22.828 -26.531 42.267 1 21.88 ? C3B NDP 207 X 1 HETATM 9 O O3B NDP . . . B 2 -23.065 -27.236 43.471 1 19.85 ? O3B NDP 207 X 1 HETATM 10 C C2B NDP . . . B 2 -23.275 -27.252 40.995 1 21.34 ? C2B NDP 207 X 1 HETATM 11 O O2B NDP . . . B 2 -24.554 -27.799 41.123 1 20.37 ? O2B NDP 207 X 1 HETATM 12 C C1B NDP . . . B 2 -23.45 -26.119 40.012 1 23.19 ? C1B NDP 207 X 1 HETATM 13 N N9A NDP . . . B 2 -22.2 -26.01 39.257 1 23.26 ? N9A NDP 207 X 1 HETATM 14 C C8A NDP . . . B 2 -21.239 -25.047 39.412 1 22.98 ? C8A NDP 207 X 1 HETATM 15 N N7A NDP . . . B 2 -20.229 -25.305 38.545 1 23.82 ? N7A NDP 207 X 1 HETATM 16 C C5A NDP . . . B 2 -20.539 -26.427 37.844 1 23.89 ? C5A NDP 207 X 1 HETATM 17 C C6A NDP . . . B 2 -19.888 -27.127 36.832 1 23.87 ? C6A NDP 207 X 1 HETATM 18 N N6A NDP . . . B 2 -18.712 -26.712 36.386 1 23.94 ? N6A NDP 207 X 1 HETATM 19 N N1A NDP . . . B 2 -20.464 -28.264 36.29 1 23.6 ? N1A NDP 207 X 1 HETATM 20 C C2A NDP . . . B 2 -21.696 -28.71 36.742 1 23.21 ? C2A NDP 207 X 1 HETATM 21 N N3A NDP . . . B 2 -22.338 -28.012 37.744 1 24.32 ? N3A NDP 207 X 1 HETATM 22 C C4A NDP . . . B 2 -21.777 -26.885 38.285 1 24.15 ? C4A NDP 207 X 1 HETATM 23 O O3 NDP . . . B 2 -23.452 -21.676 44.709 1 23.47 ? O3 NDP 207 X 1 HETATM 24 P PN NDP . . . B 2 -22.55 -20.859 45.756 1 24.8 ? PN NDP 207 X 1 HETATM 25 O O1N NDP . . . B 2 -22.669 -21.472 47.116 1 24.67 ? O1N NDP 207 X 1 HETATM 26 O O2N NDP . . . B 2 -21.197 -20.709 45.176 1 23.37 ? O2N NDP 207 X 1 HETATM 27 O O5D NDP . . . B 2 -23.36 -19.432 45.856 1 25.39 ? O5D NDP 207 X 1 HETATM 28 C C5D NDP . . . B 2 -24.652 -19.263 46.446 1 22.71 ? C5D NDP 207 X 1 HETATM 29 C C4D NDP . . . B 2 -24.719 -17.898 47.157 1 23.59 ? C4D NDP 207 X 1 HETATM 30 O O4D NDP . . . B 2 -24.47 -16.811 46.274 1 23.6 ? O4D NDP 207 X 1 HETATM 31 C C3D NDP . . . B 2 -26.048 -17.549 47.826 1 22.72 ? C3D NDP 207 X 1 HETATM 32 O O3D NDP . . . B 2 -25.674 -16.897 49.011 1 20.03 ? O3D NDP 207 X 1 HETATM 33 C C2D NDP . . . B 2 -26.688 -16.51 46.917 1 23.35 ? C2D NDP 207 X 1 HETATM 34 O O2D NDP . . . B 2 -27.496 -15.593 47.618 1 23.39 ? O2D NDP 207 X 1 HETATM 35 C C1D NDP . . . B 2 -25.451 -15.787 46.427 1 22.31 ? C1D NDP 207 X 1 HETATM 36 N N1N NDP . . . B 2 -25.609 -14.951 45.215 1 22.43 ? N1N NDP 207 X 1 HETATM 37 C C2N NDP . . . B 2 -25.394 -13.599 45.347 1 22.84 ? C2N NDP 207 X 1 HETATM 38 C C3N NDP . . . B 2 -25.5 -12.745 44.249 1 23.87 ? C3N NDP 207 X 1 HETATM 39 C C7N NDP . . . B 2 -25.072 -11.311 44.344 1 23.92 ? C7N NDP 207 X 1 HETATM 40 O O7N NDP . . . B 2 -25.034 -10.589 43.161 1 22.85 ? O7N NDP 207 X 1 HETATM 41 N N7N NDP . . . B 2 -24.742 -10.738 45.507 1 27.02 ? N7N NDP 207 X 1 HETATM 42 C C4N NDP . . . B 2 -25.823 -13.275 42.996 1 22.9 ? C4N NDP 207 X 1 HETATM 43 C C5N NDP . . . B 2 -26.041 -14.648 42.884 1 22.22 ? C5N NDP 207 X 1 HETATM 44 C C6N NDP . . . B 2 -25.929 -15.479 43.991 1 21.12 ? C6N NDP 207 X 1 HETATM 45 P P2B NDP . . . B 2 -24.798 -29.313 41.645 1 19.79 ? P2B NDP 207 X 1 HETATM 46 O O1X NDP . . . B 2 -24.375 -29.48 43.078 1 19.53 ? O1X NDP 207 X 1 HETATM 47 O O2X NDP . . . B 2 -26.284 -29.535 41.539 1 19.04 ? O2X NDP 207 X 1 HETATM 48 O O3X NDP . . . B 2 -23.976 -30.225 40.792 1 19.22 ? O3X NDP 207 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #