data_3F0X
#
_model_server_result.job_id            WmJXc-ofwvc84AHGkPVyDw 
_model_server_result.datetime_utc      '2024-11-28 07:39:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3f0x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":158}' 
#
_entry.id    3F0X 
#
_exptl.entry_id    3F0X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              386.489 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5-[(3R)-3-(5-methoxy-3',5'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3F0X 
_cell.length_a            79.048 
_cell.length_b            79.048 
_cell.length_c            108.727 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3F0X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H26 N4 O' 
_chem_comp.formula_weight    386.489 
_chem_comp.id                53T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5-[(3R)-3-(5-methoxy-3',5'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C1 53T doub 1 n y 
N2 C3 53T sing 2 n y 
C8 C5 53T sing 3 n n 
C10 C11 53T trip 4 n n 
C10 C6 53T sing 5 n n 
C11 C12 53T sing 6 n n 
C12 C13 53T sing 7 n n 
C12 C14 53T sing 8 n n 
C1 C6 53T sing 9 n y 
C1 N9 53T sing 10 n n 
C2 O17 53T sing 11 n n 
C3 N4 53T doub 12 n y 
C3 N7 53T sing 13 n n 
C5 C6 53T doub 14 n y 
C5 N4 53T sing 15 n y 
C26 C21 53T sing 16 n n 
C21 C20 53T doub 17 n y 
C21 C22 53T sing 18 n y 
C20 C25 53T sing 19 n y 
C22 C23 53T doub 20 n y 
C23 C27 53T sing 21 n n 
C23 C24 53T sing 22 n y 
C24 C25 53T doub 23 n y 
C25 C18 53T sing 24 n y 
C18 C19 53T doub 25 n y 
C18 C17 53T sing 26 n y 
C19 C14 53T sing 27 n y 
C17 C16 53T doub 28 n y 
C16 O17 53T sing 29 n n 
C16 C15 53T sing 30 n y 
C15 C14 53T doub 31 n y 
C8 H8 53T sing 32 n n 
C8 H8A 53T sing 33 n n 
C8 H8B 53T sing 34 n n 
C12 H12 53T sing 35 n n 
C13 H13 53T sing 36 n n 
C13 H13A 53T sing 37 n n 
C13 H13B 53T sing 38 n n 
C2 H2 53T sing 39 n n 
C2 H2A 53T sing 40 n n 
C2 H2B 53T sing 41 n n 
C26 H26 53T sing 42 n n 
C26 H26A 53T sing 43 n n 
C26 H26B 53T sing 44 n n 
C20 H20 53T sing 45 n n 
C22 H22 53T sing 46 n n 
C27 H27 53T sing 47 n n 
C27 H27A 53T sing 48 n n 
C27 H27B 53T sing 49 n n 
C24 H24 53T sing 50 n n 
C19 H19 53T sing 51 n n 
C17 H17 53T sing 52 n n 
C15 H15 53T sing 53 n n 
N7 HN7 53T sing 54 n n 
N7 HN7A 53T sing 55 n n 
N9 HN9 53T sing 56 n n 
N9 HN9A 53T sing 57 n n 
#
_atom_sites.entry_id                     3F0X 
_atom_sites.fract_transf_matrix[1][1]    0.012651 
_atom_sites.fract_transf_matrix[1][2]    0.007304 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014608 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009197 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP X 1 207 207 NDP NAP . 
C 3 53T X 1 158 1 53T 53T . 
D 4 HOH X 1 159 1 HOH HOH . 
D 4 HOH X 2 160 2 HOH HOH . 
D 4 HOH X 3 161 3 HOH HOH . 
D 4 HOH X 4 162 4 HOH HOH . 
D 4 HOH X 5 163 5 HOH HOH . 
D 4 HOH X 6 164 6 HOH HOH . 
D 4 HOH X 7 165 1 HOH HOH . 
D 4 HOH X 8 166 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 53T . . . C 3 -26.621 -9.027 40.136 1 17.23 ? N2 53T 158 X 1 
HETATM 2 C C8 53T . . . C 3 -29.584 -9.043 43.176 1 16.65 ? C8 53T 158 X 1 
HETATM 3 C C10 53T . . . C 3 -28.512 -11.48 42.119 1 17.52 ? C10 53T 158 X 1 
HETATM 4 C C11 53T . . . C 3 -28.931 -12.54 42.567 1 18.28 ? C11 53T 158 X 1 
HETATM 5 C C12 53T . . . C 3 -29.428 -13.812 43.104 1 19.62 ? C12 53T 158 X 1 
HETATM 6 C C13 53T . . . C 3 -29.371 -14.858 42 1 21.57 ? C13 53T 158 X 1 
HETATM 7 C C1 53T . . . C 3 -27.045 -10.213 40.595 1 16.64 ? C1 53T 158 X 1 
HETATM 8 C C2 53T . . . C 3 -31.843 -15.055 47.406 1 23.87 ? C2 53T 158 X 1 
HETATM 9 C C3 53T . . . C 3 -27.111 -7.876 40.637 1 17.34 ? C3 53T 158 X 1 
HETATM 10 C C5 53T . . . C 3 -28.52 -9.048 42.086 1 16.57 ? C5 53T 158 X 1 
HETATM 11 C C6 53T . . . C 3 -28.017 -10.244 41.598 1 17.09 ? C6 53T 158 X 1 
HETATM 12 C C26 53T . . . C 3 -37.885 -12.126 41.639 1 28.16 ? C26 53T 158 X 1 
HETATM 13 C C21 53T . . . C 3 -36.385 -11.763 41.645 1 29.5 ? C21 53T 158 X 1 
HETATM 14 C C20 53T . . . C 3 -35.461 -12.466 42.455 1 28.21 ? C20 53T 158 X 1 
HETATM 15 C C22 53T . . . C 3 -35.944 -10.708 40.83 1 28.63 ? C22 53T 158 X 1 
HETATM 16 C C23 53T . . . C 3 -34.588 -10.359 40.823 1 28.75 ? C23 53T 158 X 1 
HETATM 17 C C27 53T . . . C 3 -34.11 -9.206 39.94 1 27.99 ? C27 53T 158 X 1 
HETATM 18 C C24 53T . . . C 3 -33.674 -11.061 41.631 1 28.4 ? C24 53T 158 X 1 
HETATM 19 C C25 53T . . . C 3 -34.093 -12.117 42.459 1 26.06 ? C25 53T 158 X 1 
HETATM 20 C C18 53T . . . C 3 -33.146 -12.803 43.256 1 27.31 ? C18 53T 158 X 1 
HETATM 21 C C19 53T . . . C 3 -31.822 -12.956 42.797 1 24.62 ? C19 53T 158 X 1 
HETATM 22 C C17 53T . . . C 3 -33.492 -13.356 44.515 1 25.23 ? C17 53T 158 X 1 
HETATM 23 C C16 53T . . . C 3 -32.539 -14.038 45.303 1 25.89 ? C16 53T 158 X 1 
HETATM 24 O O17 53T . . . C 3 -32.906 -14.569 46.534 1 25.39 ? O17 53T 158 X 1 
HETATM 25 C C15 53T . . . C 3 -31.225 -14.172 44.817 1 24.76 ? C15 53T 158 X 1 
HETATM 26 C C14 53T . . . C 3 -30.871 -13.638 43.579 1 23.19 ? C14 53T 158 X 1 
HETATM 27 N N4 53T . . . C 3 -28.055 -7.892 41.593 1 16.89 ? N4 53T 158 X 1 
HETATM 28 N N7 53T . . . C 3 -26.674 -6.71 40.175 1 17.13 ? N7 53T 158 X 1 
HETATM 29 N N9 53T . . . C 3 -26.533 -11.33 40.095 1 16.14 ? N9 53T 158 X 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#