data_3F1O
#
_model_server_result.job_id            DWSHqIgy97dPx7ulJDEmeA 
_model_server_result.datetime_utc      '2024-11-26 12:39:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3f1o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":351}' 
#
_entry.id    3F1O 
#
_exptl.entry_id    3F1O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.36 
_cell.angle_gamma         90 
_cell.entry_id            3F1O 
_cell.length_a            73.761 
_cell.length_b            83.019 
_cell.length_c            41.553 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3F1O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 116 n n 
C1 C2 EDO sing 117 n n 
C1 H11 EDO sing 118 n n 
C1 H12 EDO sing 119 n n 
O1 HO1 EDO sing 120 n n 
C2 O2 EDO sing 121 n n 
C2 H21 EDO sing 122 n n 
C2 H22 EDO sing 123 n n 
O2 HO2 EDO sing 124 n n 
#
_atom_sites.entry_id                     3F1O 
_atom_sites.fract_transf_matrix[1][1]    0.013557 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00398 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012045 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025081 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 2XY A 1 1 1 2XY 2XY . 
D 4 EDO A 1 351 351 EDO EDO . 
E 5 HOH A 1 7 7 HOH HOH . 
E 5 HOH A 2 8 8 HOH HOH . 
E 5 HOH A 3 10 10 HOH HOH . 
E 5 HOH A 4 11 11 HOH HOH . 
E 5 HOH A 5 12 12 HOH HOH . 
E 5 HOH A 6 16 16 HOH HOH . 
E 5 HOH A 7 17 17 HOH HOH . 
E 5 HOH A 8 18 18 HOH HOH . 
E 5 HOH A 9 21 21 HOH HOH . 
E 5 HOH A 10 26 26 HOH HOH . 
E 5 HOH A 11 27 27 HOH HOH . 
E 5 HOH A 12 29 29 HOH HOH . 
E 5 HOH A 13 30 30 HOH HOH . 
E 5 HOH A 14 31 31 HOH HOH . 
E 5 HOH A 15 32 32 HOH HOH . 
E 5 HOH A 16 36 36 HOH HOH . 
E 5 HOH A 17 39 39 HOH HOH . 
E 5 HOH A 18 42 42 HOH HOH . 
E 5 HOH A 19 43 43 HOH HOH . 
E 5 HOH A 20 45 45 HOH HOH . 
E 5 HOH A 21 46 46 HOH HOH . 
E 5 HOH A 22 51 51 HOH HOH . 
E 5 HOH A 23 52 52 HOH HOH . 
E 5 HOH A 24 53 53 HOH HOH . 
E 5 HOH A 25 56 56 HOH HOH . 
E 5 HOH A 26 57 57 HOH HOH . 
E 5 HOH A 27 64 64 HOH HOH . 
E 5 HOH A 28 65 65 HOH HOH . 
E 5 HOH A 29 68 68 HOH HOH . 
E 5 HOH A 30 71 71 HOH HOH . 
E 5 HOH A 31 73 73 HOH HOH . 
E 5 HOH A 32 75 75 HOH HOH . 
E 5 HOH A 33 79 79 HOH HOH . 
E 5 HOH A 34 81 81 HOH HOH . 
E 5 HOH A 35 83 83 HOH HOH . 
E 5 HOH A 36 85 85 HOH HOH . 
E 5 HOH A 37 88 88 HOH HOH . 
E 5 HOH A 38 90 90 HOH HOH . 
E 5 HOH A 39 91 91 HOH HOH . 
E 5 HOH A 40 92 92 HOH HOH . 
E 5 HOH A 41 98 98 HOH HOH . 
E 5 HOH A 42 99 99 HOH HOH . 
E 5 HOH A 43 102 102 HOH HOH . 
E 5 HOH A 44 104 104 HOH HOH . 
E 5 HOH A 45 105 105 HOH HOH . 
E 5 HOH A 46 109 109 HOH HOH . 
E 5 HOH A 47 110 110 HOH HOH . 
E 5 HOH A 48 111 111 HOH HOH . 
E 5 HOH A 49 112 112 HOH HOH . 
E 5 HOH A 50 115 115 HOH HOH . 
E 5 HOH A 51 116 116 HOH HOH . 
E 5 HOH A 52 119 119 HOH HOH . 
E 5 HOH A 53 121 121 HOH HOH . 
E 5 HOH A 54 122 122 HOH HOH . 
E 5 HOH A 55 126 126 HOH HOH . 
E 5 HOH A 56 127 127 HOH HOH . 
E 5 HOH A 57 131 131 HOH HOH . 
E 5 HOH A 58 132 132 HOH HOH . 
E 5 HOH A 59 134 134 HOH HOH . 
E 5 HOH A 60 135 135 HOH HOH . 
E 5 HOH A 61 139 139 HOH HOH . 
E 5 HOH A 62 140 140 HOH HOH . 
E 5 HOH A 63 141 141 HOH HOH . 
E 5 HOH A 64 146 146 HOH HOH . 
E 5 HOH A 65 150 150 HOH HOH . 
E 5 HOH A 66 155 155 HOH HOH . 
E 5 HOH A 67 157 157 HOH HOH . 
E 5 HOH A 68 161 161 HOH HOH . 
E 5 HOH A 69 162 162 HOH HOH . 
E 5 HOH A 70 167 167 HOH HOH . 
E 5 HOH A 71 168 168 HOH HOH . 
E 5 HOH A 72 172 172 HOH HOH . 
E 5 HOH A 73 173 173 HOH HOH . 
E 5 HOH A 74 175 175 HOH HOH . 
E 5 HOH A 75 177 177 HOH HOH . 
E 5 HOH A 76 178 178 HOH HOH . 
E 5 HOH A 77 179 179 HOH HOH . 
E 5 HOH A 78 184 184 HOH HOH . 
E 5 HOH A 79 187 187 HOH HOH . 
E 5 HOH A 80 188 188 HOH HOH . 
E 5 HOH A 81 190 190 HOH HOH . 
E 5 HOH A 82 191 191 HOH HOH . 
E 5 HOH A 83 194 194 HOH HOH . 
F 5 HOH B 1 2 2 HOH HOH . 
F 5 HOH B 2 3 3 HOH HOH . 
F 5 HOH B 3 4 4 HOH HOH . 
F 5 HOH B 4 5 5 HOH HOH . 
F 5 HOH B 5 6 6 HOH HOH . 
F 5 HOH B 6 9 9 HOH HOH . 
F 5 HOH B 7 13 13 HOH HOH . 
F 5 HOH B 8 14 14 HOH HOH . 
F 5 HOH B 9 15 15 HOH HOH . 
F 5 HOH B 10 19 19 HOH HOH . 
F 5 HOH B 11 20 20 HOH HOH . 
F 5 HOH B 12 22 22 HOH HOH . 
F 5 HOH B 13 23 23 HOH HOH . 
F 5 HOH B 14 24 24 HOH HOH . 
F 5 HOH B 15 25 25 HOH HOH . 
F 5 HOH B 16 28 28 HOH HOH . 
F 5 HOH B 17 33 33 HOH HOH . 
F 5 HOH B 18 34 34 HOH HOH . 
F 5 HOH B 19 35 35 HOH HOH . 
F 5 HOH B 20 37 37 HOH HOH . 
F 5 HOH B 21 38 38 HOH HOH . 
F 5 HOH B 22 40 40 HOH HOH . 
F 5 HOH B 23 41 41 HOH HOH . 
F 5 HOH B 24 44 44 HOH HOH . 
F 5 HOH B 25 47 47 HOH HOH . 
F 5 HOH B 26 48 48 HOH HOH . 
F 5 HOH B 27 49 49 HOH HOH . 
F 5 HOH B 28 50 50 HOH HOH . 
F 5 HOH B 29 54 54 HOH HOH . 
F 5 HOH B 30 55 55 HOH HOH . 
F 5 HOH B 31 58 58 HOH HOH . 
F 5 HOH B 32 60 60 HOH HOH . 
F 5 HOH B 33 61 61 HOH HOH . 
F 5 HOH B 34 62 62 HOH HOH . 
F 5 HOH B 35 63 63 HOH HOH . 
F 5 HOH B 36 66 66 HOH HOH . 
F 5 HOH B 37 67 67 HOH HOH . 
F 5 HOH B 38 69 69 HOH HOH . 
F 5 HOH B 39 70 70 HOH HOH . 
F 5 HOH B 40 72 72 HOH HOH . 
F 5 HOH B 41 74 74 HOH HOH . 
F 5 HOH B 42 76 76 HOH HOH . 
F 5 HOH B 43 77 77 HOH HOH . 
F 5 HOH B 44 78 78 HOH HOH . 
F 5 HOH B 45 80 80 HOH HOH . 
F 5 HOH B 46 82 82 HOH HOH . 
F 5 HOH B 47 84 84 HOH HOH . 
F 5 HOH B 48 86 86 HOH HOH . 
F 5 HOH B 49 87 87 HOH HOH . 
F 5 HOH B 50 89 89 HOH HOH . 
F 5 HOH B 51 93 93 HOH HOH . 
F 5 HOH B 52 94 94 HOH HOH . 
F 5 HOH B 53 95 95 HOH HOH . 
F 5 HOH B 54 96 96 HOH HOH . 
F 5 HOH B 55 97 97 HOH HOH . 
F 5 HOH B 56 100 100 HOH HOH . 
F 5 HOH B 57 101 101 HOH HOH . 
F 5 HOH B 58 103 103 HOH HOH . 
F 5 HOH B 59 106 106 HOH HOH . 
F 5 HOH B 60 108 108 HOH HOH . 
F 5 HOH B 61 113 113 HOH HOH . 
F 5 HOH B 62 117 117 HOH HOH . 
F 5 HOH B 63 118 118 HOH HOH . 
F 5 HOH B 64 120 120 HOH HOH . 
F 5 HOH B 65 123 123 HOH HOH . 
F 5 HOH B 66 124 124 HOH HOH . 
F 5 HOH B 67 125 125 HOH HOH . 
F 5 HOH B 68 128 128 HOH HOH . 
F 5 HOH B 69 129 129 HOH HOH . 
F 5 HOH B 70 130 130 HOH HOH . 
F 5 HOH B 71 133 133 HOH HOH . 
F 5 HOH B 72 136 136 HOH HOH . 
F 5 HOH B 73 137 137 HOH HOH . 
F 5 HOH B 74 138 138 HOH HOH . 
F 5 HOH B 75 142 142 HOH HOH . 
F 5 HOH B 76 143 143 HOH HOH . 
F 5 HOH B 77 144 144 HOH HOH . 
F 5 HOH B 78 147 147 HOH HOH . 
F 5 HOH B 79 149 149 HOH HOH . 
F 5 HOH B 80 151 151 HOH HOH . 
F 5 HOH B 81 152 152 HOH HOH . 
F 5 HOH B 82 153 153 HOH HOH . 
F 5 HOH B 83 158 158 HOH HOH . 
F 5 HOH B 84 160 160 HOH HOH . 
F 5 HOH B 85 163 163 HOH HOH . 
F 5 HOH B 86 164 164 HOH HOH . 
F 5 HOH B 87 165 165 HOH HOH . 
F 5 HOH B 88 166 166 HOH HOH . 
F 5 HOH B 89 169 169 HOH HOH . 
F 5 HOH B 90 170 170 HOH HOH . 
F 5 HOH B 91 171 171 HOH HOH . 
F 5 HOH B 92 174 174 HOH HOH . 
F 5 HOH B 93 176 176 HOH HOH . 
F 5 HOH B 94 180 180 HOH HOH . 
F 5 HOH B 95 181 181 HOH HOH . 
F 5 HOH B 96 182 182 HOH HOH . 
F 5 HOH B 97 183 183 HOH HOH . 
F 5 HOH B 98 185 185 HOH HOH . 
F 5 HOH B 99 193 193 HOH HOH . 
F 5 HOH B 100 196 196 HOH HOH . 
F 5 HOH B 101 198 198 HOH HOH . 
F 5 HOH B 102 471 471 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 18.417 -30.631 8.687 0.89 30.85 ? C1 EDO 351 A 1 
HETATM 2 O O1 EDO . . . D 4 18.459 -30.099 7.385 0.89 23.21 ? O1 EDO 351 A 1 
HETATM 3 C C2 EDO . . . D 4 19.469 -29.983 9.578 0.89 26.03 ? C2 EDO 351 A 1 
HETATM 4 O O2 EDO . . . D 4 20.764 -30.168 9.056 0.89 23.27 ? O2 EDO 351 A 1 
HETATM 5 H H11 EDO . . . D 4 18.598 -31.695 8.641 0.89 37.04 ? H11 EDO 351 A 1 
HETATM 6 H H12 EDO . . . D 4 17.438 -30.456 9.11 0.89 37.04 ? H12 EDO 351 A 1 
HETATM 7 H HO1 EDO . . . D 4 17.956 -30.771 6.705 0.89 27.87 ? HO1 EDO 351 A 1 
HETATM 8 H H21 EDO . . . D 4 19.417 -30.422 10.563 0.89 31.26 ? H21 EDO 351 A 1 
HETATM 9 H H22 EDO . . . D 4 19.266 -28.924 9.652 0.89 31.26 ? H22 EDO 351 A 1 
HETATM 10 H HO2 EDO . . . D 4 21.098 -31.173 9.268 0.89 27.94 ? HO2 EDO 351 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           10 
#