data_3F1Q # _model_server_result.job_id tt9OqR_dTUbCPPJ18cFcRQ _model_server_result.datetime_utc '2025-01-10 11:58:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3F1Q # _exptl.entry_id 3F1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F1Q _cell.length_a 90.696 _cell.length_b 90.696 _cell.length_c 122.95 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 321 n y N1 C6 ORO sing 322 n y N1 HN1 ORO sing 323 n n C2 O2 ORO doub 324 n n C2 N3 ORO sing 325 n y N3 C4 ORO sing 326 n y N3 HN3 ORO sing 327 n n C4 O4 ORO doub 328 n n C4 C5 ORO sing 329 n y C5 C6 ORO doub 330 n y C5 H5 ORO sing 331 n n C6 C7 ORO sing 332 n n C7 O71 ORO doub 333 n n C7 O72 ORO sing 334 n n O72 HO7 ORO sing 335 n n # _atom_sites.entry_id 3F1Q _atom_sites.fract_transf_matrix[1][1] 0.011026 _atom_sites.fract_transf_matrix[1][2] 0.006366 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 398 398 FMN FMN . C 3 ORO A 1 1 1 ORO ORO . D 4 BCE A 1 397 1 BCE DRG . E 5 ACY A 1 399 1 ACY ACY . F 5 ACY A 1 2 2 ACY ACY . G 6 SO4 A 1 3 3 SO4 SO4 . H 7 HOH A 1 4 4 HOH HOH . H 7 HOH A 2 5 5 HOH HOH . H 7 HOH A 3 6 6 HOH HOH . H 7 HOH A 4 7 7 HOH HOH . H 7 HOH A 5 8 8 HOH HOH . H 7 HOH A 6 9 9 HOH HOH . H 7 HOH A 7 11 11 HOH HOH . H 7 HOH A 8 12 12 HOH HOH . H 7 HOH A 9 13 13 HOH HOH . H 7 HOH A 10 14 14 HOH HOH . H 7 HOH A 11 15 15 HOH HOH . H 7 HOH A 12 16 16 HOH HOH . H 7 HOH A 13 17 17 HOH HOH . H 7 HOH A 14 18 18 HOH HOH . H 7 HOH A 15 19 19 HOH HOH . H 7 HOH A 16 20 20 HOH HOH . H 7 HOH A 17 21 21 HOH HOH . H 7 HOH A 18 22 22 HOH HOH . H 7 HOH A 19 23 23 HOH HOH . H 7 HOH A 20 24 24 HOH HOH . H 7 HOH A 21 25 25 HOH HOH . H 7 HOH A 22 26 26 HOH HOH . H 7 HOH A 23 27 27 HOH HOH . H 7 HOH A 24 28 28 HOH HOH . H 7 HOH A 25 29 29 HOH HOH . H 7 HOH A 26 400 1 HOH HOH . H 7 HOH A 27 401 2 HOH HOH . H 7 HOH A 28 402 3 HOH HOH . H 7 HOH A 29 403 30 HOH HOH . H 7 HOH A 30 404 31 HOH HOH . H 7 HOH A 31 405 32 HOH HOH . H 7 HOH A 32 406 33 HOH HOH . H 7 HOH A 33 407 34 HOH HOH . H 7 HOH A 34 408 35 HOH HOH . H 7 HOH A 35 409 36 HOH HOH . H 7 HOH A 36 410 37 HOH HOH . H 7 HOH A 37 411 38 HOH HOH . H 7 HOH A 38 412 39 HOH HOH . H 7 HOH A 39 413 40 HOH HOH . H 7 HOH A 40 414 41 HOH HOH . H 7 HOH A 41 415 42 HOH HOH . H 7 HOH A 42 416 43 HOH HOH . H 7 HOH A 43 417 44 HOH HOH . H 7 HOH A 44 418 45 HOH HOH . H 7 HOH A 45 419 46 HOH HOH . H 7 HOH A 46 420 47 HOH HOH . H 7 HOH A 47 421 48 HOH HOH . H 7 HOH A 48 422 49 HOH HOH . H 7 HOH A 49 423 50 HOH HOH . H 7 HOH A 50 424 51 HOH HOH . H 7 HOH A 51 425 52 HOH HOH . H 7 HOH A 52 426 53 HOH HOH . H 7 HOH A 53 427 54 HOH HOH . H 7 HOH A 54 428 55 HOH HOH . H 7 HOH A 55 429 56 HOH HOH . H 7 HOH A 56 430 57 HOH HOH . H 7 HOH A 57 431 58 HOH HOH . H 7 HOH A 58 432 59 HOH HOH . H 7 HOH A 59 433 60 HOH HOH . H 7 HOH A 60 434 61 HOH HOH . H 7 HOH A 61 435 62 HOH HOH . H 7 HOH A 62 436 63 HOH HOH . H 7 HOH A 63 437 64 HOH HOH . H 7 HOH A 64 438 65 HOH HOH . H 7 HOH A 65 439 66 HOH HOH . H 7 HOH A 66 440 67 HOH HOH . H 7 HOH A 67 441 68 HOH HOH . H 7 HOH A 68 442 69 HOH HOH . H 7 HOH A 69 443 70 HOH HOH . H 7 HOH A 70 444 71 HOH HOH . H 7 HOH A 71 445 72 HOH HOH . H 7 HOH A 72 446 73 HOH HOH . H 7 HOH A 73 447 74 HOH HOH . H 7 HOH A 74 448 75 HOH HOH . H 7 HOH A 75 449 76 HOH HOH . H 7 HOH A 76 450 77 HOH HOH . H 7 HOH A 77 451 78 HOH HOH . H 7 HOH A 78 452 79 HOH HOH . H 7 HOH A 79 453 80 HOH HOH . H 7 HOH A 80 454 81 HOH HOH . H 7 HOH A 81 455 82 HOH HOH . H 7 HOH A 82 456 83 HOH HOH . H 7 HOH A 83 457 84 HOH HOH . H 7 HOH A 84 458 85 HOH HOH . H 7 HOH A 85 459 86 HOH HOH . H 7 HOH A 86 460 87 HOH HOH . H 7 HOH A 87 461 88 HOH HOH . H 7 HOH A 88 462 89 HOH HOH . H 7 HOH A 89 463 90 HOH HOH . H 7 HOH A 90 464 91 HOH HOH . H 7 HOH A 91 465 92 HOH HOH . H 7 HOH A 92 466 93 HOH HOH . H 7 HOH A 93 467 94 HOH HOH . H 7 HOH A 94 468 95 HOH HOH . H 7 HOH A 95 469 96 HOH HOH . H 7 HOH A 96 470 97 HOH HOH . H 7 HOH A 97 471 98 HOH HOH . H 7 HOH A 98 472 99 HOH HOH . H 7 HOH A 99 473 100 HOH HOH . H 7 HOH A 100 474 101 HOH HOH . H 7 HOH A 101 475 102 HOH HOH . H 7 HOH A 102 476 103 HOH HOH . H 7 HOH A 103 477 104 HOH HOH . H 7 HOH A 104 478 105 HOH HOH . H 7 HOH A 105 479 106 HOH HOH . H 7 HOH A 106 480 107 HOH HOH . H 7 HOH A 107 481 108 HOH HOH . H 7 HOH A 108 482 109 HOH HOH . H 7 HOH A 109 483 110 HOH HOH . H 7 HOH A 110 484 111 HOH HOH . H 7 HOH A 111 485 112 HOH HOH . H 7 HOH A 112 486 113 HOH HOH . H 7 HOH A 113 487 114 HOH HOH . H 7 HOH A 114 488 115 HOH HOH . H 7 HOH A 115 489 116 HOH HOH . H 7 HOH A 116 490 117 HOH HOH . H 7 HOH A 117 491 118 HOH HOH . H 7 HOH A 118 492 119 HOH HOH . H 7 HOH A 119 493 120 HOH HOH . H 7 HOH A 120 494 121 HOH HOH . H 7 HOH A 121 495 122 HOH HOH . H 7 HOH A 122 496 123 HOH HOH . H 7 HOH A 123 497 124 HOH HOH . H 7 HOH A 124 498 125 HOH HOH . H 7 HOH A 125 499 126 HOH HOH . H 7 HOH A 126 500 127 HOH HOH . H 7 HOH A 127 501 128 HOH HOH . H 7 HOH A 128 502 129 HOH HOH . H 7 HOH A 129 503 130 HOH HOH . H 7 HOH A 130 504 131 HOH HOH . H 7 HOH A 131 505 132 HOH HOH . H 7 HOH A 132 506 133 HOH HOH . H 7 HOH A 133 507 134 HOH HOH . H 7 HOH A 134 508 135 HOH HOH . H 7 HOH A 135 509 136 HOH HOH . H 7 HOH A 136 510 137 HOH HOH . H 7 HOH A 137 511 138 HOH HOH . H 7 HOH A 138 512 139 HOH HOH . H 7 HOH A 139 513 140 HOH HOH . H 7 HOH A 140 514 141 HOH HOH . H 7 HOH A 141 515 142 HOH HOH . H 7 HOH A 142 516 143 HOH HOH . H 7 HOH A 143 517 144 HOH HOH . H 7 HOH A 144 518 147 HOH HOH . H 7 HOH A 145 519 148 HOH HOH . H 7 HOH A 146 520 149 HOH HOH . H 7 HOH A 147 521 150 HOH HOH . H 7 HOH A 148 522 151 HOH HOH . H 7 HOH A 149 523 152 HOH HOH . H 7 HOH A 150 524 153 HOH HOH . H 7 HOH A 151 525 154 HOH HOH . H 7 HOH A 152 526 155 HOH HOH . H 7 HOH A 153 527 156 HOH HOH . H 7 HOH A 154 528 157 HOH HOH . H 7 HOH A 155 529 158 HOH HOH . H 7 HOH A 156 530 159 HOH HOH . H 7 HOH A 157 531 160 HOH HOH . H 7 HOH A 158 532 161 HOH HOH . H 7 HOH A 159 533 162 HOH HOH . H 7 HOH A 160 534 163 HOH HOH . H 7 HOH A 161 535 164 HOH HOH . H 7 HOH A 162 536 165 HOH HOH . H 7 HOH A 163 537 166 HOH HOH . H 7 HOH A 164 538 167 HOH HOH . H 7 HOH A 165 539 168 HOH HOH . H 7 HOH A 166 540 170 HOH HOH . H 7 HOH A 167 541 171 HOH HOH . H 7 HOH A 168 542 173 HOH HOH . H 7 HOH A 169 543 174 HOH HOH . H 7 HOH A 170 544 175 HOH HOH . H 7 HOH A 171 545 176 HOH HOH . H 7 HOH A 172 546 177 HOH HOH . H 7 HOH A 173 547 178 HOH HOH . H 7 HOH A 174 548 179 HOH HOH . H 7 HOH A 175 549 180 HOH HOH . H 7 HOH A 176 550 181 HOH HOH . H 7 HOH A 177 551 182 HOH HOH . H 7 HOH A 178 552 183 HOH HOH . H 7 HOH A 179 553 184 HOH HOH . H 7 HOH A 180 554 185 HOH HOH . H 7 HOH A 181 555 186 HOH HOH . H 7 HOH A 182 556 187 HOH HOH . H 7 HOH A 183 557 188 HOH HOH . H 7 HOH A 184 558 189 HOH HOH . H 7 HOH A 185 559 190 HOH HOH . H 7 HOH A 186 560 191 HOH HOH . H 7 HOH A 187 561 192 HOH HOH . H 7 HOH A 188 562 193 HOH HOH . H 7 HOH A 189 563 194 HOH HOH . H 7 HOH A 190 564 195 HOH HOH . H 7 HOH A 191 565 196 HOH HOH . H 7 HOH A 192 566 197 HOH HOH . H 7 HOH A 193 567 198 HOH HOH . H 7 HOH A 194 568 199 HOH HOH . H 7 HOH A 195 569 200 HOH HOH . H 7 HOH A 196 570 201 HOH HOH . H 7 HOH A 197 571 203 HOH HOH . H 7 HOH A 198 572 204 HOH HOH . H 7 HOH A 199 573 205 HOH HOH . H 7 HOH A 200 574 206 HOH HOH . H 7 HOH A 201 575 207 HOH HOH . H 7 HOH A 202 576 208 HOH HOH . H 7 HOH A 203 577 209 HOH HOH . H 7 HOH A 204 578 210 HOH HOH . H 7 HOH A 205 579 211 HOH HOH . H 7 HOH A 206 580 212 HOH HOH . H 7 HOH A 207 581 213 HOH HOH . H 7 HOH A 208 582 214 HOH HOH . H 7 HOH A 209 583 215 HOH HOH . H 7 HOH A 210 584 216 HOH HOH . H 7 HOH A 211 585 217 HOH HOH . H 7 HOH A 212 586 218 HOH HOH . H 7 HOH A 213 587 219 HOH HOH . H 7 HOH A 214 588 220 HOH HOH . H 7 HOH A 215 589 221 HOH HOH . H 7 HOH A 216 590 222 HOH HOH . H 7 HOH A 217 591 223 HOH HOH . H 7 HOH A 218 592 224 HOH HOH . H 7 HOH A 219 593 225 HOH HOH . H 7 HOH A 220 594 226 HOH HOH . H 7 HOH A 221 595 227 HOH HOH . H 7 HOH A 222 596 228 HOH HOH . H 7 HOH A 223 597 229 HOH HOH . H 7 HOH A 224 598 230 HOH HOH . H 7 HOH A 225 599 231 HOH HOH . H 7 HOH A 226 600 232 HOH HOH . H 7 HOH A 227 601 233 HOH HOH . H 7 HOH A 228 602 234 HOH HOH . H 7 HOH A 229 603 235 HOH HOH . H 7 HOH A 230 604 236 HOH HOH . H 7 HOH A 231 605 237 HOH HOH . H 7 HOH A 232 606 238 HOH HOH . H 7 HOH A 233 607 239 HOH HOH . H 7 HOH A 234 608 240 HOH HOH . H 7 HOH A 235 609 241 HOH HOH . H 7 HOH A 236 610 242 HOH HOH . H 7 HOH A 237 611 243 HOH HOH . H 7 HOH A 238 612 244 HOH HOH . H 7 HOH A 239 613 246 HOH HOH . H 7 HOH A 240 614 247 HOH HOH . H 7 HOH A 241 615 248 HOH HOH . H 7 HOH A 242 616 249 HOH HOH . H 7 HOH A 243 617 250 HOH HOH . H 7 HOH A 244 618 252 HOH HOH . H 7 HOH A 245 619 253 HOH HOH . H 7 HOH A 246 620 254 HOH HOH . H 7 HOH A 247 621 255 HOH HOH . H 7 HOH A 248 622 256 HOH HOH . H 7 HOH A 249 623 257 HOH HOH . H 7 HOH A 250 624 258 HOH HOH . H 7 HOH A 251 625 259 HOH HOH . H 7 HOH A 252 626 260 HOH HOH . H 7 HOH A 253 627 261 HOH HOH . H 7 HOH A 254 628 262 HOH HOH . H 7 HOH A 255 629 263 HOH HOH . H 7 HOH A 256 630 264 HOH HOH . H 7 HOH A 257 631 265 HOH HOH . H 7 HOH A 258 632 266 HOH HOH . H 7 HOH A 259 633 267 HOH HOH . H 7 HOH A 260 634 268 HOH HOH . H 7 HOH A 261 635 269 HOH HOH . H 7 HOH A 262 636 270 HOH HOH . H 7 HOH A 263 637 271 HOH HOH . H 7 HOH A 264 638 272 HOH HOH . H 7 HOH A 265 639 273 HOH HOH . H 7 HOH A 266 640 274 HOH HOH . H 7 HOH A 267 641 275 HOH HOH . H 7 HOH A 268 642 276 HOH HOH . H 7 HOH A 269 643 277 HOH HOH . H 7 HOH A 270 644 278 HOH HOH . H 7 HOH A 271 645 279 HOH HOH . H 7 HOH A 272 646 280 HOH HOH . H 7 HOH A 273 647 281 HOH HOH . H 7 HOH A 274 648 282 HOH HOH . H 7 HOH A 275 649 283 HOH HOH . H 7 HOH A 276 650 284 HOH HOH . H 7 HOH A 277 651 285 HOH HOH . H 7 HOH A 278 652 286 HOH HOH . H 7 HOH A 279 653 287 HOH HOH . H 7 HOH A 280 654 288 HOH HOH . H 7 HOH A 281 655 289 HOH HOH . H 7 HOH A 282 656 290 HOH HOH . H 7 HOH A 283 657 291 HOH HOH . H 7 HOH A 284 658 292 HOH HOH . H 7 HOH A 285 659 293 HOH HOH . H 7 HOH A 286 660 294 HOH HOH . H 7 HOH A 287 661 295 HOH HOH . H 7 HOH A 288 662 297 HOH HOH . H 7 HOH A 289 663 298 HOH HOH . H 7 HOH A 290 664 299 HOH HOH . H 7 HOH A 291 665 300 HOH HOH . H 7 HOH A 292 666 301 HOH HOH . H 7 HOH A 293 667 302 HOH HOH . H 7 HOH A 294 668 303 HOH HOH . H 7 HOH A 295 669 304 HOH HOH . H 7 HOH A 296 670 305 HOH HOH . H 7 HOH A 297 671 306 HOH HOH . H 7 HOH A 298 672 307 HOH HOH . H 7 HOH A 299 673 308 HOH HOH . H 7 HOH A 300 674 309 HOH HOH . H 7 HOH A 301 675 310 HOH HOH . H 7 HOH A 302 676 311 HOH HOH . H 7 HOH A 303 677 312 HOH HOH . H 7 HOH A 304 678 313 HOH HOH . H 7 HOH A 305 679 315 HOH HOH . H 7 HOH A 306 680 316 HOH HOH . H 7 HOH A 307 681 317 HOH HOH . H 7 HOH A 308 682 318 HOH HOH . H 7 HOH A 309 683 319 HOH HOH . H 7 HOH A 310 684 320 HOH HOH . H 7 HOH A 311 685 321 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . C 3 -3.354 -46.615 7.245 1 2 ? N1 ORO 1 A 1 HETATM 2 C C2 ORO . . . C 3 -4.32 -45.723 7.595 1 2 ? C2 ORO 1 A 1 HETATM 3 O O2 ORO . . . C 3 -4.632 -45.547 8.796 1 2 ? O2 ORO 1 A 1 HETATM 4 N N3 ORO . . . C 3 -4.961 -45 6.662 1 2 ? N3 ORO 1 A 1 HETATM 5 C C4 ORO . . . C 3 -4.67 -45.134 5.357 1 2 ? C4 ORO 1 A 1 HETATM 6 O O4 ORO . . . C 3 -5.262 -44.465 4.484 1 2 ? O4 ORO 1 A 1 HETATM 7 C C5 ORO . . . C 3 -3.694 -46.032 4.967 1 2 ? C5 ORO 1 A 1 HETATM 8 C C6 ORO . . . C 3 -3.033 -46.77 5.937 1 2 ? C6 ORO 1 A 1 HETATM 9 C C7 ORO . . . C 3 -2.02 -47.762 5.449 1 2 ? C7 ORO 1 A 1 HETATM 10 O O71 ORO . . . C 3 -2.349 -48.437 4.44 1 2 ? O71 ORO 1 A 1 HETATM 11 O O72 ORO . . . C 3 -0.932 -47.927 6.035 1 2 ? O72 ORO 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #