data_3F1S # _model_server_result.job_id mEipy_GiyVjQkdkWBv3YUg _model_server_result.datetime_utc '2025-08-31 02:42:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f1s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3F1S # _exptl.entry_id 3F1S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F1S _cell.length_a 68.562 _cell.length_b 96.514 _cell.length_c 117.077 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F1S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 5 B CYS 89 1_555 B SG CYS 17 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 13 B CYS 97 1_555 B SG CYS 26 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 28 B CYS 112 1_555 B SG CYS 41 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 47 B CYS 131 1_555 B SG CYS 149 B CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 B SG CYS 49 B CYS 133 1_555 B SG CYS 157 B CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 79 B CYS 163 1_555 B SG CYS 95 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 B SG CYS 203 B CYS 287 1_555 B SG CYS 217 B CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 F C1 NAG . B NAG 1 1_555 B ND2 ASN 109 B ASN 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 263 n n C1 O1 NAG sing 264 n n C1 O5 NAG sing 265 n n C1 H1 NAG sing 266 n n C2 C3 NAG sing 267 n n C2 N2 NAG sing 268 n n C2 H2 NAG sing 269 n n C3 C4 NAG sing 270 n n C3 O3 NAG sing 271 n n C3 H3 NAG sing 272 n n C4 C5 NAG sing 273 n n C4 O4 NAG sing 274 n n C4 H4 NAG sing 275 n n C5 C6 NAG sing 276 n n C5 O5 NAG sing 277 n n C5 H5 NAG sing 278 n n C6 O6 NAG sing 279 n n C6 H61 NAG sing 280 n n C6 H62 NAG sing 281 n n C7 C8 NAG sing 282 n n C7 N2 NAG sing 283 n n C7 O7 NAG doub 284 n n C8 H81 NAG sing 285 n n C8 H82 NAG sing 286 n n C8 H83 NAG sing 287 n n N2 HN2 NAG sing 288 n n O1 HO1 NAG sing 289 n n O3 HO3 NAG sing 290 n n O4 HO4 NAG sing 291 n n O6 HO6 NAG sing 292 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3F1S _atom_sites.fract_transf_matrix[1][1] 0.014585 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 1 1 CL CL . D 4 EDO A 1 424 1 EDO EDO . E 5 FLC A 1 425 1 FLC FLC . F 6 NAG B 1 1 1 NAG NAG . G 7 HOH A 1 3 3 HOH HOH . G 7 HOH A 2 4 4 HOH HOH . G 7 HOH A 3 5 5 HOH HOH . G 7 HOH A 4 7 7 HOH HOH . G 7 HOH A 5 8 8 HOH HOH . G 7 HOH A 6 10 10 HOH HOH . G 7 HOH A 7 12 12 HOH HOH . G 7 HOH A 8 13 13 HOH HOH . G 7 HOH A 9 14 14 HOH HOH . G 7 HOH A 10 15 15 HOH HOH . G 7 HOH A 11 16 16 HOH HOH . G 7 HOH A 12 17 17 HOH HOH . G 7 HOH A 13 18 18 HOH HOH . G 7 HOH A 14 21 21 HOH HOH . G 7 HOH A 15 23 23 HOH HOH . G 7 HOH A 16 25 25 HOH HOH . G 7 HOH A 17 26 26 HOH HOH . G 7 HOH A 18 27 27 HOH HOH . G 7 HOH A 19 29 29 HOH HOH . G 7 HOH A 20 30 30 HOH HOH . G 7 HOH A 21 33 33 HOH HOH . G 7 HOH A 22 34 34 HOH HOH . G 7 HOH A 23 35 35 HOH HOH . G 7 HOH A 24 37 37 HOH HOH . G 7 HOH A 25 426 1 HOH HOH . G 7 HOH A 26 427 39 HOH HOH . G 7 HOH A 27 428 40 HOH HOH . G 7 HOH A 28 429 42 HOH HOH . G 7 HOH A 29 430 46 HOH HOH . G 7 HOH A 30 431 47 HOH HOH . G 7 HOH A 31 432 48 HOH HOH . G 7 HOH A 32 433 50 HOH HOH . G 7 HOH A 33 434 51 HOH HOH . G 7 HOH A 34 435 52 HOH HOH . G 7 HOH A 35 436 53 HOH HOH . G 7 HOH A 36 437 54 HOH HOH . G 7 HOH A 37 438 55 HOH HOH . G 7 HOH A 38 439 56 HOH HOH . G 7 HOH A 39 440 58 HOH HOH . G 7 HOH A 40 441 59 HOH HOH . G 7 HOH A 41 442 61 HOH HOH . G 7 HOH A 42 443 63 HOH HOH . G 7 HOH A 43 444 64 HOH HOH . G 7 HOH A 44 445 65 HOH HOH . G 7 HOH A 45 446 66 HOH HOH . G 7 HOH A 46 447 69 HOH HOH . G 7 HOH A 47 448 70 HOH HOH . G 7 HOH A 48 449 72 HOH HOH . G 7 HOH A 49 450 73 HOH HOH . G 7 HOH A 50 451 75 HOH HOH . G 7 HOH A 51 452 77 HOH HOH . G 7 HOH A 52 453 78 HOH HOH . G 7 HOH A 53 454 79 HOH HOH . G 7 HOH A 54 455 80 HOH HOH . G 7 HOH A 55 456 82 HOH HOH . G 7 HOH A 56 457 83 HOH HOH . G 7 HOH A 57 458 84 HOH HOH . G 7 HOH A 58 459 3 HOH HOH . G 7 HOH A 59 460 4 HOH HOH . G 7 HOH A 60 461 12 HOH HOH . H 7 HOH B 1 2 2 HOH HOH . H 7 HOH B 2 5 5 HOH HOH . H 7 HOH B 3 7 7 HOH HOH . H 7 HOH B 4 9 9 HOH HOH . H 7 HOH B 5 11 11 HOH HOH . H 7 HOH B 6 13 13 HOH HOH . H 7 HOH B 7 14 14 HOH HOH . H 7 HOH B 8 15 15 HOH HOH . H 7 HOH B 9 19 19 HOH HOH . H 7 HOH B 10 22 22 HOH HOH . H 7 HOH B 11 24 24 HOH HOH . H 7 HOH B 12 28 28 HOH HOH . H 7 HOH B 13 44 44 HOH HOH . H 7 HOH B 14 57 57 HOH HOH . H 7 HOH B 15 60 60 HOH HOH . H 7 HOH B 16 62 62 HOH HOH . H 7 HOH B 17 68 68 HOH HOH . H 7 HOH B 18 71 71 HOH HOH . H 7 HOH B 19 74 74 HOH HOH . H 7 HOH B 20 81 81 HOH HOH . H 7 HOH B 21 368 1 HOH HOH . H 7 HOH B 22 369 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 6 -27.595 35.149 -53.527 1 61.5 ? C1 NAG 1 B 1 HETATM 2 C C2 NAG . . . F 6 -26.3 34.657 -54.192 1 65.02 ? C2 NAG 1 B 1 HETATM 3 C C3 NAG . . . F 6 -26.533 34.001 -55.565 1 65.76 ? C3 NAG 1 B 1 HETATM 4 C C4 NAG . . . F 6 -27.813 33.162 -55.619 1 65.95 ? C4 NAG 1 B 1 HETATM 5 C C5 NAG . . . F 6 -28.972 33.944 -55.005 1 65.46 ? C5 NAG 1 B 1 HETATM 6 C C6 NAG . . . F 6 -30.307 33.201 -55.092 1 65.87 ? C6 NAG 1 B 1 HETATM 7 C C7 NAG . . . F 6 -24.37 36.047 -53.504 1 67.67 ? C7 NAG 1 B 1 HETATM 8 C C8 NAG . . . F 6 -23.482 37.199 -53.897 1 67.88 ? C8 NAG 1 B 1 HETATM 9 N N2 NAG . . . F 6 -25.384 35.783 -54.337 1 66.21 ? N2 NAG 1 B 1 HETATM 10 O O3 NAG . . . F 6 -25.424 33.195 -55.918 1 66.2 ? O3 NAG 1 B 1 HETATM 11 O O4 NAG . . . F 6 -28.107 32.799 -56.954 1 66.58 ? O4 NAG 1 B 1 HETATM 12 O O5 NAG . . . F 6 -28.636 34.195 -53.651 1 63.3 ? O5 NAG 1 B 1 HETATM 13 O O6 NAG . . . F 6 -30.231 31.949 -54.441 1 66.6 ? O6 NAG 1 B 1 HETATM 14 O O7 NAG . . . F 6 -24.138 35.417 -52.467 1 68.33 ? O7 NAG 1 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 440 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #