data_3F2R # _model_server_result.job_id 4YZl680A9O0WYhoqEImJTg _model_server_result.datetime_utc '2024-11-23 11:37:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":603}' # _entry.id 3F2R # _exptl.entry_id 3F2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.538 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2S,2'S)-2,2'-biphenyl-4,4'-diylbis(2-hydroxy-4,4-dimethylmorpholin-4-ium)" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F2R _cell.length_a 55.553 _cell.length_b 119.581 _cell.length_c 131.301 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C24 H34 N2 O4 2' _chem_comp.formula_weight 414.538 _chem_comp.id HC6 _chem_comp.mon_nstd_flag . _chem_comp.name "(2S,2'S)-2,2'-biphenyl-4,4'-diylbis(2-hydroxy-4,4-dimethylmorpholin-4-ium)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC NAA HC6 sing 129 n n CAC CAD HC6 sing 130 n n CAC HAC HC6 sing 131 n n CAC HACA HC6 sing 132 n n NAA CBA HC6 sing 133 n n NAA CBB HC6 sing 134 n n NAA CAB HC6 sing 135 n n CBA HBA HC6 sing 136 n n CBA HBAA HC6 sing 137 n n CBA HBAB HC6 sing 138 n n CBB HBB HC6 sing 139 n n CBB HBBA HC6 sing 140 n n CBB HBBB HC6 sing 141 n n CAB CAF HC6 sing 142 n n CAB HAB HC6 sing 143 n n CAB HABA HC6 sing 144 n n CAF OAE HC6 sing 145 n n CAF HAF HC6 sing 146 n n CAF HAFA HC6 sing 147 n n OAE CAD HC6 sing 148 n n CAD OBC HC6 sing 149 n n CAD CAG HC6 sing 150 n n CAG CAL HC6 doub 151 n y CAG CAH HC6 sing 152 n y CAL CAK HC6 sing 153 n y CAL HAL HC6 sing 154 n n CAK CAJ HC6 doub 155 n y CAK HAK HC6 sing 156 n n CAH CAI HC6 doub 157 n y CAH HAH HC6 sing 158 n n CAI CAJ HC6 sing 159 n y CAI HAI HC6 sing 160 n n CAJ CAM HC6 sing 161 n y CAM CAR HC6 doub 162 n y CAM CAN HC6 sing 163 n y CAR CAQ HC6 sing 164 n y CAR HAR HC6 sing 165 n n CAQ CAP HC6 doub 166 n y CAQ HAQ HC6 sing 167 n n CAN CAO HC6 doub 168 n y CAN HAN HC6 sing 169 n n CAO CAP HC6 sing 170 n y CAO HAO HC6 sing 171 n n CAP CAS HC6 sing 172 n n OBD CAS HC6 sing 173 n n CAS CAX HC6 sing 174 n n CAS OAT HC6 sing 175 n n CAX NAW HC6 sing 176 n n CAX HAX HC6 sing 177 n n CAX HAXA HC6 sing 178 n n OAT CAU HC6 sing 179 n n CAU CAV HC6 sing 180 n n CAU HAU HC6 sing 181 n n CAU HAUA HC6 sing 182 n n CAV NAW HC6 sing 183 n n CAV HAV HC6 sing 184 n n CAV HAVA HC6 sing 185 n n NAW CAZ HC6 sing 186 n n NAW CAY HC6 sing 187 n n CAZ HAZ HC6 sing 188 n n CAZ HAZA HC6 sing 189 n n CAZ HAZB HC6 sing 190 n n CAY HAY HC6 sing 191 n n CAY HAYA HC6 sing 192 n n CAY HAYB HC6 sing 193 n n OBC H33 HC6 sing 194 n n OBD H34 HC6 sing 195 n n # _atom_sites.entry_id 3F2R _atom_sites.fract_transf_matrix[1][1] 0.018001 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HC6 A 1 603 603 HC6 HC6 . D 3 UNX A 1 606 606 UNX UNX . E 3 UNX A 1 1 1 UNX UNX . F 2 HC6 B 1 603 603 HC6 HC6 . G 3 UNX B 1 606 606 UNX UNX . H 3 UNX B 1 2 2 UNX UNX . I 4 HOH A 1 2 2 HOH HOH . I 4 HOH A 2 3 3 HOH HOH . I 4 HOH A 3 5 5 HOH HOH . I 4 HOH A 4 6 6 HOH HOH . I 4 HOH A 5 7 7 HOH HOH . I 4 HOH A 6 10 10 HOH HOH . I 4 HOH A 7 13 13 HOH HOH . I 4 HOH A 8 14 14 HOH HOH . I 4 HOH A 9 16 16 HOH HOH . I 4 HOH A 10 17 17 HOH HOH . I 4 HOH A 11 18 18 HOH HOH . I 4 HOH A 12 19 19 HOH HOH . I 4 HOH A 13 20 20 HOH HOH . I 4 HOH A 14 22 22 HOH HOH . I 4 HOH A 15 23 23 HOH HOH . I 4 HOH A 16 24 24 HOH HOH . I 4 HOH A 17 26 26 HOH HOH . I 4 HOH A 18 29 29 HOH HOH . I 4 HOH A 19 30 30 HOH HOH . I 4 HOH A 20 32 32 HOH HOH . I 4 HOH A 21 33 33 HOH HOH . I 4 HOH A 22 36 36 HOH HOH . I 4 HOH A 23 37 37 HOH HOH . I 4 HOH A 24 39 39 HOH HOH . I 4 HOH A 25 40 40 HOH HOH . I 4 HOH A 26 41 41 HOH HOH . I 4 HOH A 27 46 46 HOH HOH . I 4 HOH A 28 47 47 HOH HOH . I 4 HOH A 29 48 48 HOH HOH . I 4 HOH A 30 49 49 HOH HOH . I 4 HOH A 31 50 50 HOH HOH . J 4 HOH B 1 1 1 HOH HOH . J 4 HOH B 2 4 4 HOH HOH . J 4 HOH B 3 8 8 HOH HOH . J 4 HOH B 4 9 9 HOH HOH . J 4 HOH B 5 11 11 HOH HOH . J 4 HOH B 6 12 12 HOH HOH . J 4 HOH B 7 15 15 HOH HOH . J 4 HOH B 8 21 21 HOH HOH . J 4 HOH B 9 25 25 HOH HOH . J 4 HOH B 10 27 27 HOH HOH . J 4 HOH B 11 28 28 HOH HOH . J 4 HOH B 12 31 31 HOH HOH . J 4 HOH B 13 34 34 HOH HOH . J 4 HOH B 14 35 35 HOH HOH . J 4 HOH B 15 38 38 HOH HOH . J 4 HOH B 16 42 42 HOH HOH . J 4 HOH B 17 43 43 HOH HOH . J 4 HOH B 18 44 44 HOH HOH . J 4 HOH B 19 45 45 HOH HOH . J 4 HOH B 20 51 51 HOH HOH . J 4 HOH B 21 52 52 HOH HOH . J 4 HOH B 22 53 53 HOH HOH . J 4 HOH B 23 54 54 HOH HOH . J 4 HOH B 24 55 55 HOH HOH . J 4 HOH B 25 56 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC HC6 . . . F 2 7.881 24.33 28.237 1 44.62 ? CAC HC6 603 B 1 HETATM 2 N NAA HC6 . . . F 2 6.899 23.854 29.245 1 43.19 ? NAA HC6 603 B 1 HETATM 3 C CBA HC6 . . . F 2 5.637 24.615 29.2 1 42.59 ? CBA HC6 603 B 1 HETATM 4 C CBB HC6 . . . F 2 6.628 22.454 28.913 1 43.48 ? CBB HC6 603 B 1 HETATM 5 C CAB HC6 . . . F 2 7.415 23.939 30.609 1 42.48 ? CAB HC6 603 B 1 HETATM 6 C CAF HC6 . . . F 2 7.716 25.388 30.922 1 43 ? CAF HC6 603 B 1 HETATM 7 O OAE HC6 . . . F 2 8.734 25.795 29.975 1 47 ? OAE HC6 603 B 1 HETATM 8 C CAD HC6 . . . F 2 8.343 25.745 28.587 1 46.45 ? CAD HC6 603 B 1 HETATM 9 O OBC HC6 . . . F 2 7.259 26.647 28.416 1 50.25 ? OBC HC6 603 B 1 HETATM 10 C CAG HC6 . . . F 2 9.487 26.226 27.677 1 46.16 ? CAG HC6 603 B 1 HETATM 11 C CAL HC6 . . . F 2 10.827 26.147 28.07 1 46.23 ? CAL HC6 603 B 1 HETATM 12 C CAK HC6 . . . F 2 11.849 26.603 27.236 1 43.07 ? CAK HC6 603 B 1 HETATM 13 C CAH HC6 . . . F 2 9.193 26.786 26.442 1 44.66 ? CAH HC6 603 B 1 HETATM 14 C CAI HC6 . . . F 2 10.217 27.234 25.602 1 43.22 ? CAI HC6 603 B 1 HETATM 15 C CAJ HC6 . . . F 2 11.552 27.158 26.003 1 43.46 ? CAJ HC6 603 B 1 HETATM 16 C CAM HC6 . . . F 2 12.559 27.599 25.141 1 44.3 ? CAM HC6 603 B 1 HETATM 17 C CAR HC6 . . . F 2 13.635 26.756 24.886 1 44.85 ? CAR HC6 603 B 1 HETATM 18 C CAQ HC6 . . . F 2 14.651 27.14 24 1 48.13 ? CAQ HC6 603 B 1 HETATM 19 C CAN HC6 . . . F 2 12.496 28.834 24.468 1 44.58 ? CAN HC6 603 B 1 HETATM 20 C CAO HC6 . . . F 2 13.513 29.214 23.583 1 45.85 ? CAO HC6 603 B 1 HETATM 21 C CAP HC6 . . . F 2 14.605 28.37 23.34 1 47.79 ? CAP HC6 603 B 1 HETATM 22 C CAS HC6 . . . F 2 15.763 28.764 22.375 1 50.73 ? CAS HC6 603 B 1 HETATM 23 O OBD HC6 . . . F 2 15.308 29.463 21.181 1 49.01 ? OBD HC6 603 B 1 HETATM 24 C CAX HC6 . . . F 2 16.829 29.598 23.145 1 51.65 ? CAX HC6 603 B 1 HETATM 25 O OAT HC6 . . . F 2 16.356 27.568 21.986 1 52.24 ? OAT HC6 603 B 1 HETATM 26 C CAU HC6 . . . F 2 17.443 27.841 21.086 1 54.46 ? CAU HC6 603 B 1 HETATM 27 C CAV HC6 . . . F 2 18.59 28.679 21.653 1 53.83 ? CAV HC6 603 B 1 HETATM 28 N NAW HC6 . . . F 2 18.094 29.85 22.389 1 52.62 ? NAW HC6 603 B 1 HETATM 29 C CAZ HC6 . . . F 2 17.92 31.043 21.546 1 51.39 ? CAZ HC6 603 B 1 HETATM 30 C CAY HC6 . . . F 2 19.199 30.127 23.31 1 52.38 ? CAY HC6 603 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #