data_3F2V # _model_server_result.job_id zfjBHH85CFZIOWY9rn9qyg _model_server_result.datetime_utc '2025-03-09 04:40:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 3F2V # _exptl.entry_id 3F2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F2V _cell.length_a 59.058 _cell.length_b 89.622 _cell.length_c 69.772 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 69.772 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3F2V _atom_sites.fract_transf_matrix[1][1] 0.016933 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 201 201 FMN FMN . C 3 HOH A 1 193 1 HOH HOH . C 3 HOH A 2 194 2 HOH HOH . C 3 HOH A 3 195 3 HOH HOH . C 3 HOH A 4 196 4 HOH HOH . C 3 HOH A 5 197 5 HOH HOH . C 3 HOH A 6 198 6 HOH HOH . C 3 HOH A 7 199 7 HOH HOH . C 3 HOH A 8 200 8 HOH HOH . C 3 HOH A 9 202 9 HOH HOH . C 3 HOH A 10 203 10 HOH HOH . C 3 HOH A 11 204 11 HOH HOH . C 3 HOH A 12 205 12 HOH HOH . C 3 HOH A 13 206 13 HOH HOH . C 3 HOH A 14 207 14 HOH HOH . C 3 HOH A 15 208 15 HOH HOH . C 3 HOH A 16 209 16 HOH HOH . C 3 HOH A 17 210 17 HOH HOH . C 3 HOH A 18 211 18 HOH HOH . C 3 HOH A 19 212 19 HOH HOH . C 3 HOH A 20 213 20 HOH HOH . C 3 HOH A 21 214 21 HOH HOH . C 3 HOH A 22 215 22 HOH HOH . C 3 HOH A 23 216 23 HOH HOH . C 3 HOH A 24 217 24 HOH HOH . C 3 HOH A 25 218 25 HOH HOH . C 3 HOH A 26 219 26 HOH HOH . C 3 HOH A 27 220 27 HOH HOH . C 3 HOH A 28 221 28 HOH HOH . C 3 HOH A 29 222 29 HOH HOH . C 3 HOH A 30 223 30 HOH HOH . C 3 HOH A 31 224 31 HOH HOH . C 3 HOH A 32 225 32 HOH HOH . C 3 HOH A 33 226 33 HOH HOH . C 3 HOH A 34 227 34 HOH HOH . C 3 HOH A 35 228 35 HOH HOH . C 3 HOH A 36 229 36 HOH HOH . C 3 HOH A 37 230 37 HOH HOH . C 3 HOH A 38 231 38 HOH HOH . C 3 HOH A 39 232 39 HOH HOH . C 3 HOH A 40 233 40 HOH HOH . C 3 HOH A 41 234 41 HOH HOH . C 3 HOH A 42 235 42 HOH HOH . C 3 HOH A 43 236 43 HOH HOH . C 3 HOH A 44 237 44 HOH HOH . C 3 HOH A 45 238 45 HOH HOH . C 3 HOH A 46 239 46 HOH HOH . C 3 HOH A 47 240 47 HOH HOH . C 3 HOH A 48 241 48 HOH HOH . C 3 HOH A 49 242 49 HOH HOH . C 3 HOH A 50 243 50 HOH HOH . C 3 HOH A 51 244 51 HOH HOH . C 3 HOH A 52 245 52 HOH HOH . C 3 HOH A 53 246 53 HOH HOH . C 3 HOH A 54 247 54 HOH HOH . C 3 HOH A 55 248 55 HOH HOH . C 3 HOH A 56 249 56 HOH HOH . C 3 HOH A 57 250 57 HOH HOH . C 3 HOH A 58 251 58 HOH HOH . C 3 HOH A 59 252 59 HOH HOH . C 3 HOH A 60 253 60 HOH HOH . C 3 HOH A 61 254 61 HOH HOH . C 3 HOH A 62 255 62 HOH HOH . C 3 HOH A 63 256 63 HOH HOH . C 3 HOH A 64 257 64 HOH HOH . C 3 HOH A 65 258 65 HOH HOH . C 3 HOH A 66 259 66 HOH HOH . C 3 HOH A 67 260 67 HOH HOH . C 3 HOH A 68 261 68 HOH HOH . C 3 HOH A 69 262 69 HOH HOH . C 3 HOH A 70 263 70 HOH HOH . C 3 HOH A 71 264 71 HOH HOH . C 3 HOH A 72 265 72 HOH HOH . C 3 HOH A 73 266 73 HOH HOH . C 3 HOH A 74 267 74 HOH HOH . C 3 HOH A 75 268 75 HOH HOH . C 3 HOH A 76 269 76 HOH HOH . C 3 HOH A 77 270 77 HOH HOH . C 3 HOH A 78 271 78 HOH HOH . C 3 HOH A 79 272 79 HOH HOH . C 3 HOH A 80 273 80 HOH HOH . C 3 HOH A 81 274 81 HOH HOH . C 3 HOH A 82 275 82 HOH HOH . C 3 HOH A 83 276 83 HOH HOH . C 3 HOH A 84 277 84 HOH HOH . C 3 HOH A 85 278 85 HOH HOH . C 3 HOH A 86 279 86 HOH HOH . C 3 HOH A 87 280 87 HOH HOH . C 3 HOH A 88 281 88 HOH HOH . C 3 HOH A 89 282 89 HOH HOH . C 3 HOH A 90 283 90 HOH HOH . C 3 HOH A 91 284 91 HOH HOH . C 3 HOH A 92 285 92 HOH HOH . C 3 HOH A 93 286 93 HOH HOH . C 3 HOH A 94 287 94 HOH HOH . C 3 HOH A 95 288 95 HOH HOH . C 3 HOH A 96 289 96 HOH HOH . C 3 HOH A 97 290 97 HOH HOH . C 3 HOH A 98 291 98 HOH HOH . C 3 HOH A 99 292 99 HOH HOH . C 3 HOH A 100 293 100 HOH HOH . C 3 HOH A 101 294 101 HOH HOH . C 3 HOH A 102 295 102 HOH HOH . C 3 HOH A 103 296 103 HOH HOH . C 3 HOH A 104 297 104 HOH HOH . C 3 HOH A 105 298 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 11.555 -8.795 24.831 1 40.67 ? N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . B 2 10.43 -8.293 25.349 1 31.99 ? C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . B 2 9.738 -7.694 24.65 1 53.5 ? O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . B 2 10.101 -8.357 26.806 1 42.32 ? N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . B 2 11.077 -8.752 27.795 1 35.05 ? C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . B 2 10.786 -8.366 28.949 1 25.34 ? O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . B 2 12.337 -9.114 27.283 1 42.46 ? C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . B 2 13.485 -9.382 28.03 1 42.92 ? N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . B 2 14.77 -9.751 27.652 1 49.73 ? C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . B 2 15.87 -9.897 28.642 1 47.36 ? C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . B 2 17.225 -10.231 28.152 1 48.76 ? C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . B 2 18.362 -10.173 29.189 1 53.92 ? C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . B 2 17.364 -10.393 26.541 1 46.25 ? C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . B 2 18.396 -10.432 25.807 1 44.05 ? C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . B 2 16.335 -10.284 25.77 1 43.08 ? C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . B 2 14.998 -9.887 26.22 1 43.52 ? C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . B 2 13.828 -9.614 25.396 1 32.81 ? N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . B 2 12.492 -9.23 25.815 1 43.51 ? C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . B 2 13.991 -9.745 23.869 1 38.17 ? C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . B 2 14.441 -8.431 23.205 1 27.08 ? C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . B 2 13.515 -7.371 23.455 1 32.37 ? O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . B 2 14.576 -8.595 21.698 1 35.58 ? C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . B 2 15.419 -9.714 21.402 1 46.67 ? O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . B 2 15.19 -7.312 21.096 1 44.56 ? C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . B 2 14.156 -6.369 20.722 1 48.42 ? O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . B 2 15.981 -7.572 19.871 1 44.9 ? C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . B 2 16.964 -6.649 19.783 1 55.84 ? O5' FMN 201 A 1 HETATM 28 P P FMN . . . B 2 17.272 -5.875 18.49 1 55.75 ? P FMN 201 A 1 HETATM 29 O O1P FMN . . . B 2 18.394 -4.953 18.746 1 56 ? O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . B 2 17.596 -6.902 17.48 1 56.41 ? O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . B 2 16.013 -5.238 18.255 1 69.26 ? O3P FMN 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #