data_3F33 # _model_server_result.job_id VMgZkL9d2AEdhyKmOM4Gag _model_server_result.datetime_utc '2024-11-27 06:13:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 3F33 # _exptl.entry_id 3F33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F33 _cell.length_a 182.487 _cell.length_b 182.487 _cell.length_c 182.487 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 11 A GLU 11 1_555 G CD CD . A CD 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc2 A OE1 GLU 56 A GLU 56 1_555 D CD CD . A CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc3 A OE2 GLU 56 A GLU 56 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.06 ? metalc ? metalc4 A OE2 GLU 57 A GLU 57 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.368 ? metalc ? metalc5 A OE1 GLU 60 A GLU 60 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.179 ? metalc ? metalc6 A OE2 GLU 60 A GLU 60 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.469 ? metalc ? metalc7 A OD2 ASP 80 A ASP 80 1_555 B CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc8 A OE1 GLU 88 A GLU 88 1_555 E CD CD . A CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc9 A OE1 GLU 130 A GLU 130 1_555 C CD CD . A CD 1002 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.547 ? metalc ? metalc10 A OE1 GLU 130 A GLU 130 1_555 C CD CD . A CD 1002 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.595 ? metalc ? metalc11 A OE2 GLU 130 A GLU 130 1_555 C CD CD . A CD 1002 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.522 ? metalc ? metalc12 J O HOH . A HOH 383 1_555 C CD CD . A CD 1002 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.398 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3F33 _atom_sites.fract_transf_matrix[1][1] 0.00548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 1001 1001 CD CD . C 2 CD A 1 1002 1002 CD CD . D 2 CD A 1 1003 1003 CD CD . E 2 CD A 1 1004 1004 CD CD . F 2 CD A 1 1005 1005 CD CD . G 2 CD A 1 1006 1006 CD CD . H 3 PFL A 1 2001 2001 PFL PFL . I 4 SO4 A 1 3001 3001 SO4 SO4 . J 5 HOH A 1 175 175 HOH HOH . J 5 HOH A 2 176 176 HOH HOH . J 5 HOH A 3 177 177 HOH HOH . J 5 HOH A 4 178 178 HOH HOH . J 5 HOH A 5 179 179 HOH HOH . J 5 HOH A 6 180 180 HOH HOH . J 5 HOH A 7 181 181 HOH HOH . J 5 HOH A 8 182 182 HOH HOH . J 5 HOH A 9 183 183 HOH HOH . J 5 HOH A 10 184 184 HOH HOH . J 5 HOH A 11 185 185 HOH HOH . J 5 HOH A 12 186 186 HOH HOH . J 5 HOH A 13 187 187 HOH HOH . J 5 HOH A 14 188 188 HOH HOH . J 5 HOH A 15 189 189 HOH HOH . J 5 HOH A 16 190 190 HOH HOH . J 5 HOH A 17 191 191 HOH HOH . J 5 HOH A 18 192 192 HOH HOH . J 5 HOH A 19 193 193 HOH HOH . J 5 HOH A 20 194 194 HOH HOH . J 5 HOH A 21 195 195 HOH HOH . J 5 HOH A 22 196 196 HOH HOH . J 5 HOH A 23 197 197 HOH HOH . J 5 HOH A 24 198 198 HOH HOH . J 5 HOH A 25 199 199 HOH HOH . J 5 HOH A 26 200 200 HOH HOH . J 5 HOH A 27 201 201 HOH HOH . J 5 HOH A 28 202 202 HOH HOH . J 5 HOH A 29 203 203 HOH HOH . J 5 HOH A 30 204 204 HOH HOH . J 5 HOH A 31 205 205 HOH HOH . J 5 HOH A 32 206 206 HOH HOH . J 5 HOH A 33 207 207 HOH HOH . J 5 HOH A 34 208 208 HOH HOH . J 5 HOH A 35 209 209 HOH HOH . J 5 HOH A 36 210 210 HOH HOH . J 5 HOH A 37 211 1 HOH HOH . J 5 HOH A 38 212 2 HOH HOH . J 5 HOH A 39 213 3 HOH HOH . J 5 HOH A 40 214 4 HOH HOH . J 5 HOH A 41 215 5 HOH HOH . J 5 HOH A 42 216 6 HOH HOH . J 5 HOH A 43 217 7 HOH HOH . J 5 HOH A 44 218 8 HOH HOH . J 5 HOH A 45 219 9 HOH HOH . J 5 HOH A 46 220 10 HOH HOH . J 5 HOH A 47 221 11 HOH HOH . J 5 HOH A 48 222 12 HOH HOH . J 5 HOH A 49 223 13 HOH HOH . J 5 HOH A 50 224 14 HOH HOH . J 5 HOH A 51 225 15 HOH HOH . J 5 HOH A 52 226 16 HOH HOH . J 5 HOH A 53 227 17 HOH HOH . J 5 HOH A 54 228 18 HOH HOH . J 5 HOH A 55 229 19 HOH HOH . J 5 HOH A 56 230 20 HOH HOH . J 5 HOH A 57 231 21 HOH HOH . J 5 HOH A 58 232 22 HOH HOH . J 5 HOH A 59 233 23 HOH HOH . J 5 HOH A 60 234 24 HOH HOH . J 5 HOH A 61 235 25 HOH HOH . J 5 HOH A 62 236 26 HOH HOH . J 5 HOH A 63 237 27 HOH HOH . J 5 HOH A 64 238 28 HOH HOH . J 5 HOH A 65 239 29 HOH HOH . J 5 HOH A 66 240 30 HOH HOH . J 5 HOH A 67 241 31 HOH HOH . J 5 HOH A 68 242 32 HOH HOH . J 5 HOH A 69 243 33 HOH HOH . J 5 HOH A 70 244 34 HOH HOH . J 5 HOH A 71 245 35 HOH HOH . J 5 HOH A 72 246 36 HOH HOH . J 5 HOH A 73 247 37 HOH HOH . J 5 HOH A 74 248 38 HOH HOH . J 5 HOH A 75 249 39 HOH HOH . J 5 HOH A 76 250 40 HOH HOH . J 5 HOH A 77 251 41 HOH HOH . J 5 HOH A 78 252 42 HOH HOH . J 5 HOH A 79 253 43 HOH HOH . J 5 HOH A 80 254 44 HOH HOH . J 5 HOH A 81 255 45 HOH HOH . J 5 HOH A 82 256 46 HOH HOH . J 5 HOH A 83 257 47 HOH HOH . J 5 HOH A 84 258 48 HOH HOH . J 5 HOH A 85 259 49 HOH HOH . J 5 HOH A 86 260 50 HOH HOH . J 5 HOH A 87 261 51 HOH HOH . J 5 HOH A 88 262 52 HOH HOH . J 5 HOH A 89 263 53 HOH HOH . J 5 HOH A 90 264 54 HOH HOH . J 5 HOH A 91 265 55 HOH HOH . J 5 HOH A 92 266 56 HOH HOH . J 5 HOH A 93 267 57 HOH HOH . J 5 HOH A 94 268 58 HOH HOH . J 5 HOH A 95 269 59 HOH HOH . J 5 HOH A 96 270 60 HOH HOH . J 5 HOH A 97 271 61 HOH HOH . J 5 HOH A 98 272 62 HOH HOH . J 5 HOH A 99 273 63 HOH HOH . J 5 HOH A 100 274 64 HOH HOH . J 5 HOH A 101 275 65 HOH HOH . J 5 HOH A 102 276 66 HOH HOH . J 5 HOH A 103 277 67 HOH HOH . J 5 HOH A 104 278 68 HOH HOH . J 5 HOH A 105 279 69 HOH HOH . J 5 HOH A 106 280 70 HOH HOH . J 5 HOH A 107 281 71 HOH HOH . J 5 HOH A 108 282 72 HOH HOH . J 5 HOH A 109 283 73 HOH HOH . J 5 HOH A 110 284 74 HOH HOH . J 5 HOH A 111 285 75 HOH HOH . J 5 HOH A 112 286 76 HOH HOH . J 5 HOH A 113 287 77 HOH HOH . J 5 HOH A 114 288 78 HOH HOH . J 5 HOH A 115 289 79 HOH HOH . J 5 HOH A 116 290 80 HOH HOH . J 5 HOH A 117 291 81 HOH HOH . J 5 HOH A 118 292 82 HOH HOH . J 5 HOH A 119 293 83 HOH HOH . J 5 HOH A 120 294 84 HOH HOH . J 5 HOH A 121 295 85 HOH HOH . J 5 HOH A 122 296 86 HOH HOH . J 5 HOH A 123 297 87 HOH HOH . J 5 HOH A 124 298 88 HOH HOH . J 5 HOH A 125 299 89 HOH HOH . J 5 HOH A 126 300 90 HOH HOH . J 5 HOH A 127 301 91 HOH HOH . J 5 HOH A 128 302 92 HOH HOH . J 5 HOH A 129 303 93 HOH HOH . J 5 HOH A 130 304 94 HOH HOH . J 5 HOH A 131 305 95 HOH HOH . J 5 HOH A 132 306 96 HOH HOH . J 5 HOH A 133 307 97 HOH HOH . J 5 HOH A 134 308 98 HOH HOH . J 5 HOH A 135 309 99 HOH HOH . J 5 HOH A 136 310 100 HOH HOH . J 5 HOH A 137 311 101 HOH HOH . J 5 HOH A 138 312 102 HOH HOH . J 5 HOH A 139 313 103 HOH HOH . J 5 HOH A 140 314 104 HOH HOH . J 5 HOH A 141 315 105 HOH HOH . J 5 HOH A 142 316 106 HOH HOH . J 5 HOH A 143 317 107 HOH HOH . J 5 HOH A 144 318 108 HOH HOH . J 5 HOH A 145 319 109 HOH HOH . J 5 HOH A 146 320 110 HOH HOH . J 5 HOH A 147 321 111 HOH HOH . J 5 HOH A 148 322 112 HOH HOH . J 5 HOH A 149 323 113 HOH HOH . J 5 HOH A 150 324 114 HOH HOH . J 5 HOH A 151 325 115 HOH HOH . J 5 HOH A 152 326 116 HOH HOH . J 5 HOH A 153 327 117 HOH HOH . J 5 HOH A 154 328 118 HOH HOH . J 5 HOH A 155 329 119 HOH HOH . J 5 HOH A 156 330 120 HOH HOH . J 5 HOH A 157 331 121 HOH HOH . J 5 HOH A 158 332 122 HOH HOH . J 5 HOH A 159 333 123 HOH HOH . J 5 HOH A 160 334 124 HOH HOH . J 5 HOH A 161 335 125 HOH HOH . J 5 HOH A 162 336 126 HOH HOH . J 5 HOH A 163 337 127 HOH HOH . J 5 HOH A 164 338 128 HOH HOH . J 5 HOH A 165 339 129 HOH HOH . J 5 HOH A 166 340 130 HOH HOH . J 5 HOH A 167 341 131 HOH HOH . J 5 HOH A 168 342 132 HOH HOH . J 5 HOH A 169 343 133 HOH HOH . J 5 HOH A 170 344 134 HOH HOH . J 5 HOH A 171 345 135 HOH HOH . J 5 HOH A 172 346 136 HOH HOH . J 5 HOH A 173 347 137 HOH HOH . J 5 HOH A 174 348 138 HOH HOH . J 5 HOH A 175 349 139 HOH HOH . J 5 HOH A 176 350 140 HOH HOH . J 5 HOH A 177 351 141 HOH HOH . J 5 HOH A 178 352 142 HOH HOH . J 5 HOH A 179 353 143 HOH HOH . J 5 HOH A 180 354 144 HOH HOH . J 5 HOH A 181 355 145 HOH HOH . J 5 HOH A 182 356 146 HOH HOH . J 5 HOH A 183 357 147 HOH HOH . J 5 HOH A 184 358 148 HOH HOH . J 5 HOH A 185 359 149 HOH HOH . J 5 HOH A 186 360 150 HOH HOH . J 5 HOH A 187 361 151 HOH HOH . J 5 HOH A 188 362 152 HOH HOH . J 5 HOH A 189 363 153 HOH HOH . J 5 HOH A 190 364 154 HOH HOH . J 5 HOH A 191 365 155 HOH HOH . J 5 HOH A 192 366 156 HOH HOH . J 5 HOH A 193 367 157 HOH HOH . J 5 HOH A 194 368 158 HOH HOH . J 5 HOH A 195 369 159 HOH HOH . J 5 HOH A 196 370 160 HOH HOH . J 5 HOH A 197 371 161 HOH HOH . J 5 HOH A 198 372 162 HOH HOH . J 5 HOH A 199 373 163 HOH HOH . J 5 HOH A 200 374 164 HOH HOH . J 5 HOH A 201 375 165 HOH HOH . J 5 HOH A 202 376 166 HOH HOH . J 5 HOH A 203 377 167 HOH HOH . J 5 HOH A 204 378 168 HOH HOH . J 5 HOH A 205 379 169 HOH HOH . J 5 HOH A 206 380 170 HOH HOH . J 5 HOH A 207 381 171 HOH HOH . J 5 HOH A 208 382 172 HOH HOH . J 5 HOH A 209 383 173 HOH HOH . J 5 HOH A 210 384 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CD CD CD . A . C 2 30.024 29.669 29.82 0.16 56.61 ? CD CD 1002 A 1 HETATM 2 CD CD CD . B . C 2 30.088 30.064 31.703 0.16 29.8 ? CD CD 1002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 387 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 2 #