data_3F37 # _model_server_result.job_id Kve9GkI4dXx-vdawYW_nog _model_server_result.datetime_utc '2024-11-23 16:59:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f37 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 3F37 # _exptl.entry_id 3F37 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F37 _cell.length_a 181.252 _cell.length_b 181.252 _cell.length_c 181.252 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F37 _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 11 A GLU 11 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.457 ? metalc ? metalc2 A OE2 GLU 56 A GLU 56 1_555 G CD CD . A CD 1006 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 A OE1 GLU 56 A GLU 56 1_555 H CD CD . A CD 1007 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.563 ? metalc ? metalc4 A OE1 GLU 60 A GLU 60 1_555 G CD CD . A CD 1006 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 A OE2 GLU 60 A GLU 60 1_555 G CD CD . A CD 1006 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.456 ? metalc ? metalc6 A OE2 GLU 60 A GLU 60 1_555 G CD CD . A CD 1006 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.401 ? metalc ? metalc7 A OD2 ASP 80 A ASP 80 1_555 B CD CD . A CD 1001 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.124 ? metalc ? metalc8 A OE1 GLU 130 A GLU 130 1_555 D CD CD . A CD 1003 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.513 ? metalc ? metalc9 A OE2 GLU 130 A GLU 130 1_555 D CD CD . A CD 1003 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.542 ? metalc ? metalc10 N O HOH . A HOH 178 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.181 ? metalc ? metalc11 N O HOH . A HOH 186 1_555 E CD CD . A CD 1004 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.325 ? metalc ? metalc12 N O HOH . A HOH 330 1_555 D CD CD . A CD 1003 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.411 ? metalc ? metalc13 N O HOH . A HOH 369 1_555 D CD CD . A CD 1003 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.944 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3F37 _atom_sites.fract_transf_matrix[1][1] 0.005517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 1001 1001 CD CD . C 2 CD A 1 1002 1002 CD CD . D 2 CD A 1 1003 1003 CD CD . E 2 CD A 1 1004 1004 CD CD . F 2 CD A 1 1005 1005 CD CD . G 2 CD A 1 1006 1006 CD CD . H 2 CD A 1 1007 1007 CD CD . I 3 2MY A 1 2001 2001 2MY 2MY . J 4 SO4 A 1 3001 3001 SO4 SO4 . K 4 SO4 A 1 3002 3002 SO4 SO4 . L 4 SO4 A 1 3003 3003 SO4 SO4 . M 5 ACT A 1 3004 3004 ACT ACT . N 6 HOH A 1 175 175 HOH HOH . N 6 HOH A 2 176 176 HOH HOH . N 6 HOH A 3 177 177 HOH HOH . N 6 HOH A 4 178 178 HOH HOH . N 6 HOH A 5 179 179 HOH HOH . N 6 HOH A 6 180 180 HOH HOH . N 6 HOH A 7 181 181 HOH HOH . N 6 HOH A 8 182 182 HOH HOH . N 6 HOH A 9 183 183 HOH HOH . N 6 HOH A 10 184 184 HOH HOH . N 6 HOH A 11 185 185 HOH HOH . N 6 HOH A 12 186 186 HOH HOH . N 6 HOH A 13 187 187 HOH HOH . N 6 HOH A 14 188 188 HOH HOH . N 6 HOH A 15 189 189 HOH HOH . N 6 HOH A 16 190 190 HOH HOH . N 6 HOH A 17 191 191 HOH HOH . N 6 HOH A 18 192 192 HOH HOH . N 6 HOH A 19 193 193 HOH HOH . N 6 HOH A 20 194 194 HOH HOH . N 6 HOH A 21 195 195 HOH HOH . N 6 HOH A 22 196 196 HOH HOH . N 6 HOH A 23 197 197 HOH HOH . N 6 HOH A 24 198 198 HOH HOH . N 6 HOH A 25 199 199 HOH HOH . N 6 HOH A 26 200 200 HOH HOH . N 6 HOH A 27 201 201 HOH HOH . N 6 HOH A 28 202 202 HOH HOH . N 6 HOH A 29 203 203 HOH HOH . N 6 HOH A 30 204 1 HOH HOH . N 6 HOH A 31 205 2 HOH HOH . N 6 HOH A 32 206 3 HOH HOH . N 6 HOH A 33 207 4 HOH HOH . N 6 HOH A 34 208 5 HOH HOH . N 6 HOH A 35 209 6 HOH HOH . N 6 HOH A 36 210 7 HOH HOH . N 6 HOH A 37 211 8 HOH HOH . N 6 HOH A 38 212 9 HOH HOH . N 6 HOH A 39 213 10 HOH HOH . N 6 HOH A 40 214 11 HOH HOH . N 6 HOH A 41 215 12 HOH HOH . N 6 HOH A 42 216 13 HOH HOH . N 6 HOH A 43 217 14 HOH HOH . N 6 HOH A 44 218 15 HOH HOH . N 6 HOH A 45 219 16 HOH HOH . N 6 HOH A 46 220 17 HOH HOH . N 6 HOH A 47 221 18 HOH HOH . N 6 HOH A 48 222 19 HOH HOH . N 6 HOH A 49 223 20 HOH HOH . N 6 HOH A 50 224 21 HOH HOH . N 6 HOH A 51 225 22 HOH HOH . N 6 HOH A 52 226 23 HOH HOH . N 6 HOH A 53 227 24 HOH HOH . N 6 HOH A 54 228 25 HOH HOH . N 6 HOH A 55 229 26 HOH HOH . N 6 HOH A 56 230 27 HOH HOH . N 6 HOH A 57 231 28 HOH HOH . N 6 HOH A 58 232 29 HOH HOH . N 6 HOH A 59 233 30 HOH HOH . N 6 HOH A 60 234 31 HOH HOH . N 6 HOH A 61 235 32 HOH HOH . N 6 HOH A 62 236 33 HOH HOH . N 6 HOH A 63 237 34 HOH HOH . N 6 HOH A 64 238 35 HOH HOH . N 6 HOH A 65 239 36 HOH HOH . N 6 HOH A 66 240 37 HOH HOH . N 6 HOH A 67 241 38 HOH HOH . N 6 HOH A 68 242 39 HOH HOH . N 6 HOH A 69 243 40 HOH HOH . N 6 HOH A 70 244 41 HOH HOH . N 6 HOH A 71 245 42 HOH HOH . N 6 HOH A 72 246 43 HOH HOH . N 6 HOH A 73 247 44 HOH HOH . N 6 HOH A 74 248 45 HOH HOH . N 6 HOH A 75 249 46 HOH HOH . N 6 HOH A 76 250 47 HOH HOH . N 6 HOH A 77 251 48 HOH HOH . N 6 HOH A 78 252 49 HOH HOH . N 6 HOH A 79 253 50 HOH HOH . N 6 HOH A 80 254 51 HOH HOH . N 6 HOH A 81 255 52 HOH HOH . N 6 HOH A 82 256 53 HOH HOH . N 6 HOH A 83 257 54 HOH HOH . N 6 HOH A 84 258 55 HOH HOH . N 6 HOH A 85 259 56 HOH HOH . N 6 HOH A 86 260 57 HOH HOH . N 6 HOH A 87 261 58 HOH HOH . N 6 HOH A 88 262 59 HOH HOH . N 6 HOH A 89 263 60 HOH HOH . N 6 HOH A 90 264 61 HOH HOH . N 6 HOH A 91 265 62 HOH HOH . N 6 HOH A 92 266 63 HOH HOH . N 6 HOH A 93 267 64 HOH HOH . N 6 HOH A 94 268 65 HOH HOH . N 6 HOH A 95 269 66 HOH HOH . N 6 HOH A 96 270 67 HOH HOH . N 6 HOH A 97 271 68 HOH HOH . N 6 HOH A 98 272 69 HOH HOH . N 6 HOH A 99 273 70 HOH HOH . N 6 HOH A 100 274 71 HOH HOH . N 6 HOH A 101 275 72 HOH HOH . N 6 HOH A 102 276 73 HOH HOH . N 6 HOH A 103 277 74 HOH HOH . N 6 HOH A 104 278 75 HOH HOH . N 6 HOH A 105 279 76 HOH HOH . N 6 HOH A 106 280 77 HOH HOH . N 6 HOH A 107 281 78 HOH HOH . N 6 HOH A 108 282 79 HOH HOH . N 6 HOH A 109 283 80 HOH HOH . N 6 HOH A 110 284 81 HOH HOH . N 6 HOH A 111 285 82 HOH HOH . N 6 HOH A 112 286 83 HOH HOH . N 6 HOH A 113 287 84 HOH HOH . N 6 HOH A 114 288 85 HOH HOH . N 6 HOH A 115 289 86 HOH HOH . N 6 HOH A 116 290 87 HOH HOH . N 6 HOH A 117 291 88 HOH HOH . N 6 HOH A 118 292 89 HOH HOH . N 6 HOH A 119 293 90 HOH HOH . N 6 HOH A 120 294 91 HOH HOH . N 6 HOH A 121 295 92 HOH HOH . N 6 HOH A 122 296 93 HOH HOH . N 6 HOH A 123 297 94 HOH HOH . N 6 HOH A 124 298 95 HOH HOH . N 6 HOH A 125 299 96 HOH HOH . N 6 HOH A 126 300 97 HOH HOH . N 6 HOH A 127 301 98 HOH HOH . N 6 HOH A 128 302 99 HOH HOH . N 6 HOH A 129 303 100 HOH HOH . N 6 HOH A 130 304 101 HOH HOH . N 6 HOH A 131 305 102 HOH HOH . N 6 HOH A 132 306 103 HOH HOH . N 6 HOH A 133 307 104 HOH HOH . N 6 HOH A 134 308 105 HOH HOH . N 6 HOH A 135 309 106 HOH HOH . N 6 HOH A 136 310 107 HOH HOH . N 6 HOH A 137 311 108 HOH HOH . N 6 HOH A 138 312 109 HOH HOH . N 6 HOH A 139 313 110 HOH HOH . N 6 HOH A 140 314 111 HOH HOH . N 6 HOH A 141 315 112 HOH HOH . N 6 HOH A 142 316 113 HOH HOH . N 6 HOH A 143 317 114 HOH HOH . N 6 HOH A 144 318 115 HOH HOH . N 6 HOH A 145 319 116 HOH HOH . N 6 HOH A 146 320 117 HOH HOH . N 6 HOH A 147 321 118 HOH HOH . N 6 HOH A 148 322 119 HOH HOH . N 6 HOH A 149 323 120 HOH HOH . N 6 HOH A 150 324 121 HOH HOH . N 6 HOH A 151 325 122 HOH HOH . N 6 HOH A 152 326 123 HOH HOH . N 6 HOH A 153 327 124 HOH HOH . N 6 HOH A 154 328 125 HOH HOH . N 6 HOH A 155 329 126 HOH HOH . N 6 HOH A 156 330 127 HOH HOH . N 6 HOH A 157 331 128 HOH HOH . N 6 HOH A 158 332 129 HOH HOH . N 6 HOH A 159 333 130 HOH HOH . N 6 HOH A 160 334 131 HOH HOH . N 6 HOH A 161 335 132 HOH HOH . N 6 HOH A 162 336 133 HOH HOH . N 6 HOH A 163 337 134 HOH HOH . N 6 HOH A 164 338 135 HOH HOH . N 6 HOH A 165 339 136 HOH HOH . N 6 HOH A 166 340 137 HOH HOH . N 6 HOH A 167 341 138 HOH HOH . N 6 HOH A 168 342 139 HOH HOH . N 6 HOH A 169 343 140 HOH HOH . N 6 HOH A 170 344 141 HOH HOH . N 6 HOH A 171 345 142 HOH HOH . N 6 HOH A 172 346 143 HOH HOH . N 6 HOH A 173 347 144 HOH HOH . N 6 HOH A 174 348 145 HOH HOH . N 6 HOH A 175 349 146 HOH HOH . N 6 HOH A 176 350 147 HOH HOH . N 6 HOH A 177 351 148 HOH HOH . N 6 HOH A 178 352 149 HOH HOH . N 6 HOH A 179 353 150 HOH HOH . N 6 HOH A 180 354 151 HOH HOH . N 6 HOH A 181 355 152 HOH HOH . N 6 HOH A 182 356 153 HOH HOH . N 6 HOH A 183 357 154 HOH HOH . N 6 HOH A 184 358 155 HOH HOH . N 6 HOH A 185 359 156 HOH HOH . N 6 HOH A 186 360 157 HOH HOH . N 6 HOH A 187 361 158 HOH HOH . N 6 HOH A 188 362 159 HOH HOH . N 6 HOH A 189 363 160 HOH HOH . N 6 HOH A 190 364 161 HOH HOH . N 6 HOH A 191 365 162 HOH HOH . N 6 HOH A 192 366 163 HOH HOH . N 6 HOH A 193 367 164 HOH HOH . N 6 HOH A 194 368 165 HOH HOH . N 6 HOH A 195 369 166 HOH HOH . N 6 HOH A 196 370 167 HOH HOH . N 6 HOH A 197 371 168 HOH HOH . N 6 HOH A 198 372 169 HOH HOH . N 6 HOH A 199 373 170 HOH HOH . N 6 HOH A 200 374 171 HOH HOH . N 6 HOH A 201 375 172 HOH HOH . N 6 HOH A 202 376 173 HOH HOH . N 6 HOH A 203 377 174 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id A _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 29.816 _atom_site.Cartn_y 29.824 _atom_site.Cartn_z 31.41 _atom_site.occupancy 0.16 _atom_site.B_iso_or_equiv 28.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #