data_3F38
#
_model_server_result.job_id            BJHH18gluLDUlXCX-ore2g 
_model_server_result.datetime_utc      '2024-11-23 17:15:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3f38 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1006}' 
#
_entry.id    3F38 
#
_exptl.entry_id    3F38 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3F38 
_cell.length_a            181.988 
_cell.length_b            181.988 
_cell.length_c            181.988 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3F38 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        209 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 4 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    24-meric 
_pdbx_struct_assembly.oligomeric_count      24 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 
7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 
8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 
9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 
11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 
12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 
13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 
18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 
19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 
20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 
21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 
22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 
23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 
24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 11 A GLU 11 1_555 G CD CD . A CD 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc2 A OE2 GLU 11 A GLU 11 1_555 G CD CD . A CD 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc3 A OE2 GLU 53 A GLU 53 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc4 A OE2 GLU 56 A GLU 56 1_555 E CD CD . A CD 1004 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc5 A OE1 GLU 56 A GLU 56 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc6 A OE1 GLU 57 A GLU 57 1_555 E CD CD . A CD 1004 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc7 A OE1 GLU 60 A GLU 60 1_555 E CD CD . A CD 1004 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc8 A OE2 GLU 60 A GLU 60 1_555 E CD CD . A CD 1004 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc9 A OE2 GLU 60 A GLU 60 1_555 E CD CD . A CD 1004 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc10 A OD1 ASP 80 A ASP 80 1_555 B CD CD . A CD 1001 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc11 A OE2 GLU 130 A GLU 130 1_555 C CD CD . A CD 1002 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.502 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3F38 
_atom_sites.fract_transf_matrix[1][1]    0.005495 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005495 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005495 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 1001 1001 CD CD . 
C 2 CD A 1 1002 1002 CD CD . 
D 2 CD A 1 1003 1003 CD CD . 
E 2 CD A 1 1004 1004 CD CD . 
F 2 CD A 1 1005 1005 CD CD . 
G 2 CD A 1 1006 1006 CD CD . 
H 3 2MY A 1 2001 2001 2MY 2MY . 
I 4 SO4 A 1 3001 3001 SO4 SO4 . 
J 4 SO4 A 1 3002 3002 SO4 SO4 . 
K 5 HOH A 1 175 175 HOH HOH . 
K 5 HOH A 2 176 176 HOH HOH . 
K 5 HOH A 3 177 177 HOH HOH . 
K 5 HOH A 4 178 178 HOH HOH . 
K 5 HOH A 5 179 179 HOH HOH . 
K 5 HOH A 6 180 1 HOH HOH . 
K 5 HOH A 7 181 2 HOH HOH . 
K 5 HOH A 8 182 3 HOH HOH . 
K 5 HOH A 9 183 4 HOH HOH . 
K 5 HOH A 10 184 5 HOH HOH . 
K 5 HOH A 11 185 6 HOH HOH . 
K 5 HOH A 12 186 7 HOH HOH . 
K 5 HOH A 13 187 8 HOH HOH . 
K 5 HOH A 14 188 9 HOH HOH . 
K 5 HOH A 15 189 10 HOH HOH . 
K 5 HOH A 16 190 11 HOH HOH . 
K 5 HOH A 17 191 12 HOH HOH . 
K 5 HOH A 18 192 13 HOH HOH . 
K 5 HOH A 19 193 14 HOH HOH . 
K 5 HOH A 20 194 15 HOH HOH . 
K 5 HOH A 21 195 16 HOH HOH . 
K 5 HOH A 22 196 17 HOH HOH . 
K 5 HOH A 23 197 18 HOH HOH . 
K 5 HOH A 24 198 19 HOH HOH . 
K 5 HOH A 25 199 20 HOH HOH . 
K 5 HOH A 26 200 21 HOH HOH . 
K 5 HOH A 27 201 22 HOH HOH . 
K 5 HOH A 28 202 23 HOH HOH . 
K 5 HOH A 29 203 24 HOH HOH . 
K 5 HOH A 30 204 25 HOH HOH . 
K 5 HOH A 31 205 26 HOH HOH . 
K 5 HOH A 32 206 27 HOH HOH . 
K 5 HOH A 33 207 28 HOH HOH . 
K 5 HOH A 34 208 29 HOH HOH . 
K 5 HOH A 35 209 30 HOH HOH . 
K 5 HOH A 36 210 31 HOH HOH . 
K 5 HOH A 37 211 32 HOH HOH . 
K 5 HOH A 38 212 33 HOH HOH . 
K 5 HOH A 39 213 34 HOH HOH . 
K 5 HOH A 40 214 35 HOH HOH . 
K 5 HOH A 41 215 36 HOH HOH . 
K 5 HOH A 42 216 37 HOH HOH . 
K 5 HOH A 43 217 38 HOH HOH . 
K 5 HOH A 44 218 39 HOH HOH . 
K 5 HOH A 45 219 40 HOH HOH . 
K 5 HOH A 46 220 41 HOH HOH . 
K 5 HOH A 47 221 42 HOH HOH . 
K 5 HOH A 48 222 43 HOH HOH . 
K 5 HOH A 49 223 44 HOH HOH . 
K 5 HOH A 50 224 45 HOH HOH . 
K 5 HOH A 51 225 46 HOH HOH . 
K 5 HOH A 52 226 47 HOH HOH . 
K 5 HOH A 53 227 48 HOH HOH . 
K 5 HOH A 54 228 49 HOH HOH . 
K 5 HOH A 55 229 50 HOH HOH . 
K 5 HOH A 56 230 51 HOH HOH . 
K 5 HOH A 57 231 52 HOH HOH . 
K 5 HOH A 58 232 53 HOH HOH . 
K 5 HOH A 59 233 54 HOH HOH . 
K 5 HOH A 60 234 55 HOH HOH . 
K 5 HOH A 61 235 56 HOH HOH . 
K 5 HOH A 62 236 57 HOH HOH . 
K 5 HOH A 63 237 58 HOH HOH . 
K 5 HOH A 64 238 59 HOH HOH . 
K 5 HOH A 65 239 60 HOH HOH . 
K 5 HOH A 66 240 61 HOH HOH . 
K 5 HOH A 67 241 62 HOH HOH . 
K 5 HOH A 68 242 63 HOH HOH . 
K 5 HOH A 69 243 64 HOH HOH . 
K 5 HOH A 70 244 65 HOH HOH . 
K 5 HOH A 71 245 66 HOH HOH . 
K 5 HOH A 72 246 67 HOH HOH . 
K 5 HOH A 73 247 68 HOH HOH . 
K 5 HOH A 74 248 69 HOH HOH . 
K 5 HOH A 75 249 70 HOH HOH . 
K 5 HOH A 76 250 71 HOH HOH . 
K 5 HOH A 77 251 72 HOH HOH . 
K 5 HOH A 78 252 73 HOH HOH . 
K 5 HOH A 79 253 74 HOH HOH . 
K 5 HOH A 80 254 75 HOH HOH . 
K 5 HOH A 81 255 76 HOH HOH . 
K 5 HOH A 82 256 77 HOH HOH . 
K 5 HOH A 83 257 78 HOH HOH . 
K 5 HOH A 84 258 79 HOH HOH . 
K 5 HOH A 85 259 80 HOH HOH . 
K 5 HOH A 86 260 81 HOH HOH . 
K 5 HOH A 87 261 82 HOH HOH . 
K 5 HOH A 88 262 83 HOH HOH . 
K 5 HOH A 89 263 84 HOH HOH . 
K 5 HOH A 90 264 85 HOH HOH . 
K 5 HOH A 91 265 86 HOH HOH . 
K 5 HOH A 92 266 87 HOH HOH . 
K 5 HOH A 93 267 88 HOH HOH . 
K 5 HOH A 94 268 89 HOH HOH . 
K 5 HOH A 95 269 90 HOH HOH . 
K 5 HOH A 96 270 91 HOH HOH . 
K 5 HOH A 97 271 92 HOH HOH . 
K 5 HOH A 98 272 93 HOH HOH . 
K 5 HOH A 99 273 94 HOH HOH . 
K 5 HOH A 100 274 95 HOH HOH . 
K 5 HOH A 101 275 96 HOH HOH . 
K 5 HOH A 102 276 97 HOH HOH . 
K 5 HOH A 103 277 98 HOH HOH . 
K 5 HOH A 104 278 99 HOH HOH . 
K 5 HOH A 105 279 100 HOH HOH . 
K 5 HOH A 106 280 101 HOH HOH . 
K 5 HOH A 107 281 102 HOH HOH . 
K 5 HOH A 108 282 103 HOH HOH . 
K 5 HOH A 109 283 104 HOH HOH . 
K 5 HOH A 110 284 105 HOH HOH . 
K 5 HOH A 111 285 106 HOH HOH . 
K 5 HOH A 112 286 107 HOH HOH . 
K 5 HOH A 113 287 108 HOH HOH . 
K 5 HOH A 114 288 109 HOH HOH . 
K 5 HOH A 115 289 110 HOH HOH . 
K 5 HOH A 116 290 111 HOH HOH . 
K 5 HOH A 117 291 112 HOH HOH . 
K 5 HOH A 118 292 113 HOH HOH . 
K 5 HOH A 119 293 114 HOH HOH . 
K 5 HOH A 120 294 115 HOH HOH . 
K 5 HOH A 121 295 116 HOH HOH . 
K 5 HOH A 122 296 117 HOH HOH . 
K 5 HOH A 123 297 118 HOH HOH . 
K 5 HOH A 124 298 119 HOH HOH . 
K 5 HOH A 125 299 120 HOH HOH . 
K 5 HOH A 126 300 121 HOH HOH . 
K 5 HOH A 127 301 122 HOH HOH . 
K 5 HOH A 128 302 123 HOH HOH . 
K 5 HOH A 129 303 124 HOH HOH . 
K 5 HOH A 130 304 125 HOH HOH . 
K 5 HOH A 131 305 126 HOH HOH . 
K 5 HOH A 132 306 127 HOH HOH . 
K 5 HOH A 133 307 128 HOH HOH . 
K 5 HOH A 134 308 129 HOH HOH . 
K 5 HOH A 135 309 130 HOH HOH . 
K 5 HOH A 136 310 131 HOH HOH . 
K 5 HOH A 137 311 132 HOH HOH . 
K 5 HOH A 138 312 133 HOH HOH . 
K 5 HOH A 139 313 134 HOH HOH . 
K 5 HOH A 140 314 135 HOH HOH . 
K 5 HOH A 141 315 136 HOH HOH . 
K 5 HOH A 142 316 137 HOH HOH . 
K 5 HOH A 143 317 138 HOH HOH . 
K 5 HOH A 144 318 139 HOH HOH . 
K 5 HOH A 145 319 140 HOH HOH . 
K 5 HOH A 146 320 141 HOH HOH . 
K 5 HOH A 147 321 142 HOH HOH . 
K 5 HOH A 148 322 143 HOH HOH . 
K 5 HOH A 149 323 144 HOH HOH . 
K 5 HOH A 150 324 145 HOH HOH . 
K 5 HOH A 151 325 146 HOH HOH . 
K 5 HOH A 152 326 147 HOH HOH . 
K 5 HOH A 153 327 148 HOH HOH . 
K 5 HOH A 154 328 149 HOH HOH . 
K 5 HOH A 155 329 150 HOH HOH . 
K 5 HOH A 156 330 151 HOH HOH . 
K 5 HOH A 157 331 152 HOH HOH . 
K 5 HOH A 158 332 153 HOH HOH . 
K 5 HOH A 159 333 154 HOH HOH . 
K 5 HOH A 160 334 155 HOH HOH . 
K 5 HOH A 161 335 156 HOH HOH . 
K 5 HOH A 162 336 157 HOH HOH . 
K 5 HOH A 163 337 158 HOH HOH . 
K 5 HOH A 164 338 159 HOH HOH . 
K 5 HOH A 165 339 160 HOH HOH . 
K 5 HOH A 166 340 161 HOH HOH . 
K 5 HOH A 167 341 162 HOH HOH . 
K 5 HOH A 168 342 163 HOH HOH . 
K 5 HOH A 169 343 164 HOH HOH . 
K 5 HOH A 170 344 165 HOH HOH . 
K 5 HOH A 171 345 166 HOH HOH . 
K 5 HOH A 172 346 167 HOH HOH . 
K 5 HOH A 173 347 168 HOH HOH . 
K 5 HOH A 174 348 169 HOH HOH . 
K 5 HOH A 175 349 170 HOH HOH . 
K 5 HOH A 176 350 171 HOH HOH . 
K 5 HOH A 177 351 172 HOH HOH . 
K 5 HOH A 178 352 173 HOH HOH . 
K 5 HOH A 179 353 174 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               50.925 
_atom_site.Cartn_y               26.303 
_atom_site.Cartn_z               35.01 
_atom_site.occupancy             0.3 
_atom_site.B_iso_or_equiv        51.8 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           1006 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#