data_3F39 # _model_server_result.job_id dJMap5iUYxV-mQW9UwlODA _model_server_result.datetime_utc '2024-10-20 01:29:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1006}' # _entry.id 3F39 # _exptl.entry_id 3F39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F39 _cell.length_a 181.532 _cell.length_b 181.532 _cell.length_c 181.532 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 11 A GLU 11 1_555 G CD CD . A CD 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc2 A OE2 GLU 11 A GLU 11 1_555 G CD CD . A CD 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc3 A OE1 GLU 45 A GLU 45 1_555 I CD CD . A CD 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc4 A OE2 GLU 45 A GLU 45 1_555 I CD CD . A CD 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc5 A OE2 GLU 53 A GLU 53 1_555 H CD CD . A CD 1007 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.573 ? metalc ? metalc6 A OE2 GLU 56 A GLU 56 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.135 ? metalc ? metalc7 A OE1 GLU 56 A GLU 56 1_555 H CD CD . A CD 1007 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.593 ? metalc ? metalc8 A OE1 GLU 60 A GLU 60 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.249 ? metalc ? metalc9 A OE2 GLU 60 A GLU 60 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.397 ? metalc ? metalc10 A OD2 ASP 80 A ASP 80 1_555 B CD CD . A CD 1001 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.089 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3F39 _atom_sites.fract_transf_matrix[1][1] 0.005509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 1001 1001 CD CD . C 2 CD A 1 1002 1002 CD CD . D 2 CD A 1 1003 1003 CD CD . E 2 CD A 1 1004 1004 CD CD . F 2 CD A 1 1005 1005 CD CD . G 2 CD A 1 1006 1006 CD CD . H 2 CD A 1 1007 1007 CD CD . I 2 CD A 1 1008 1008 CD CD . J 3 IPH A 1 2001 2001 IPH IPH . K 4 SO4 A 1 3001 3001 SO4 SO4 . L 4 SO4 A 1 3002 3002 SO4 SO4 . M 5 HOH A 1 175 1 HOH HOH . M 5 HOH A 2 176 2 HOH HOH . M 5 HOH A 3 177 3 HOH HOH . M 5 HOH A 4 178 4 HOH HOH . M 5 HOH A 5 179 5 HOH HOH . M 5 HOH A 6 180 6 HOH HOH . M 5 HOH A 7 181 7 HOH HOH . M 5 HOH A 8 182 8 HOH HOH . M 5 HOH A 9 183 9 HOH HOH . M 5 HOH A 10 184 10 HOH HOH . M 5 HOH A 11 185 11 HOH HOH . M 5 HOH A 12 186 12 HOH HOH . M 5 HOH A 13 187 13 HOH HOH . M 5 HOH A 14 188 14 HOH HOH . M 5 HOH A 15 189 15 HOH HOH . M 5 HOH A 16 190 16 HOH HOH . M 5 HOH A 17 191 17 HOH HOH . M 5 HOH A 18 192 18 HOH HOH . M 5 HOH A 19 193 19 HOH HOH . M 5 HOH A 20 194 20 HOH HOH . M 5 HOH A 21 195 21 HOH HOH . M 5 HOH A 22 196 22 HOH HOH . M 5 HOH A 23 197 23 HOH HOH . M 5 HOH A 24 198 24 HOH HOH . M 5 HOH A 25 199 25 HOH HOH . M 5 HOH A 26 200 26 HOH HOH . M 5 HOH A 27 201 27 HOH HOH . M 5 HOH A 28 202 28 HOH HOH . M 5 HOH A 29 203 29 HOH HOH . M 5 HOH A 30 204 30 HOH HOH . M 5 HOH A 31 205 31 HOH HOH . M 5 HOH A 32 206 32 HOH HOH . M 5 HOH A 33 207 33 HOH HOH . M 5 HOH A 34 208 34 HOH HOH . M 5 HOH A 35 209 35 HOH HOH . M 5 HOH A 36 210 36 HOH HOH . M 5 HOH A 37 211 37 HOH HOH . M 5 HOH A 38 212 38 HOH HOH . M 5 HOH A 39 213 39 HOH HOH . M 5 HOH A 40 214 40 HOH HOH . M 5 HOH A 41 215 41 HOH HOH . M 5 HOH A 42 216 42 HOH HOH . M 5 HOH A 43 217 43 HOH HOH . M 5 HOH A 44 218 44 HOH HOH . M 5 HOH A 45 219 45 HOH HOH . M 5 HOH A 46 220 46 HOH HOH . M 5 HOH A 47 221 47 HOH HOH . M 5 HOH A 48 222 48 HOH HOH . M 5 HOH A 49 223 49 HOH HOH . M 5 HOH A 50 224 50 HOH HOH . M 5 HOH A 51 225 51 HOH HOH . M 5 HOH A 52 226 52 HOH HOH . M 5 HOH A 53 227 53 HOH HOH . M 5 HOH A 54 228 54 HOH HOH . M 5 HOH A 55 229 55 HOH HOH . M 5 HOH A 56 230 56 HOH HOH . M 5 HOH A 57 231 57 HOH HOH . M 5 HOH A 58 232 58 HOH HOH . M 5 HOH A 59 233 59 HOH HOH . M 5 HOH A 60 234 60 HOH HOH . M 5 HOH A 61 235 61 HOH HOH . M 5 HOH A 62 236 62 HOH HOH . M 5 HOH A 63 237 63 HOH HOH . M 5 HOH A 64 238 64 HOH HOH . M 5 HOH A 65 239 65 HOH HOH . M 5 HOH A 66 240 66 HOH HOH . M 5 HOH A 67 241 67 HOH HOH . M 5 HOH A 68 242 68 HOH HOH . M 5 HOH A 69 243 69 HOH HOH . M 5 HOH A 70 244 70 HOH HOH . M 5 HOH A 71 245 71 HOH HOH . M 5 HOH A 72 246 72 HOH HOH . M 5 HOH A 73 247 73 HOH HOH . M 5 HOH A 74 248 74 HOH HOH . M 5 HOH A 75 249 75 HOH HOH . M 5 HOH A 76 250 76 HOH HOH . M 5 HOH A 77 251 77 HOH HOH . M 5 HOH A 78 252 78 HOH HOH . M 5 HOH A 79 253 79 HOH HOH . M 5 HOH A 80 254 80 HOH HOH . M 5 HOH A 81 255 81 HOH HOH . M 5 HOH A 82 256 82 HOH HOH . M 5 HOH A 83 257 83 HOH HOH . M 5 HOH A 84 258 84 HOH HOH . M 5 HOH A 85 259 85 HOH HOH . M 5 HOH A 86 260 86 HOH HOH . M 5 HOH A 87 261 87 HOH HOH . M 5 HOH A 88 262 88 HOH HOH . M 5 HOH A 89 263 89 HOH HOH . M 5 HOH A 90 264 90 HOH HOH . M 5 HOH A 91 265 91 HOH HOH . M 5 HOH A 92 266 92 HOH HOH . M 5 HOH A 93 267 93 HOH HOH . M 5 HOH A 94 268 94 HOH HOH . M 5 HOH A 95 269 95 HOH HOH . M 5 HOH A 96 270 96 HOH HOH . M 5 HOH A 97 271 97 HOH HOH . M 5 HOH A 98 272 98 HOH HOH . M 5 HOH A 99 273 99 HOH HOH . M 5 HOH A 100 274 100 HOH HOH . M 5 HOH A 101 275 101 HOH HOH . M 5 HOH A 102 276 102 HOH HOH . M 5 HOH A 103 277 104 HOH HOH . M 5 HOH A 104 278 105 HOH HOH . M 5 HOH A 105 279 106 HOH HOH . M 5 HOH A 106 280 107 HOH HOH . M 5 HOH A 107 281 108 HOH HOH . M 5 HOH A 108 282 109 HOH HOH . M 5 HOH A 109 283 110 HOH HOH . M 5 HOH A 110 284 111 HOH HOH . M 5 HOH A 111 285 112 HOH HOH . M 5 HOH A 112 286 113 HOH HOH . M 5 HOH A 113 287 114 HOH HOH . M 5 HOH A 114 288 115 HOH HOH . M 5 HOH A 115 289 116 HOH HOH . M 5 HOH A 116 290 117 HOH HOH . M 5 HOH A 117 291 118 HOH HOH . M 5 HOH A 118 292 119 HOH HOH . M 5 HOH A 119 293 120 HOH HOH . M 5 HOH A 120 294 121 HOH HOH . M 5 HOH A 121 295 122 HOH HOH . M 5 HOH A 122 296 124 HOH HOH . M 5 HOH A 123 297 125 HOH HOH . M 5 HOH A 124 298 126 HOH HOH . M 5 HOH A 125 299 127 HOH HOH . M 5 HOH A 126 300 128 HOH HOH . M 5 HOH A 127 301 129 HOH HOH . M 5 HOH A 128 302 130 HOH HOH . M 5 HOH A 129 303 131 HOH HOH . M 5 HOH A 130 304 132 HOH HOH . M 5 HOH A 131 305 133 HOH HOH . M 5 HOH A 132 306 134 HOH HOH . M 5 HOH A 133 307 135 HOH HOH . M 5 HOH A 134 308 136 HOH HOH . M 5 HOH A 135 309 137 HOH HOH . M 5 HOH A 136 310 138 HOH HOH . M 5 HOH A 137 311 139 HOH HOH . M 5 HOH A 138 312 140 HOH HOH . M 5 HOH A 139 313 141 HOH HOH . M 5 HOH A 140 314 142 HOH HOH . M 5 HOH A 141 315 143 HOH HOH . M 5 HOH A 142 316 144 HOH HOH . M 5 HOH A 143 317 145 HOH HOH . M 5 HOH A 144 318 146 HOH HOH . M 5 HOH A 145 319 147 HOH HOH . M 5 HOH A 146 320 148 HOH HOH . M 5 HOH A 147 321 149 HOH HOH . M 5 HOH A 148 322 150 HOH HOH . M 5 HOH A 149 323 151 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 50.942 _atom_site.Cartn_y 26.154 _atom_site.Cartn_z 34.995 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 56.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 1006 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #