data_3F3M # _model_server_result.job_id 6VLHCzRhZ9wurBFkE4BEpQ _model_server_result.datetime_utc '2024-11-21 22:49:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3F3M # _exptl.entry_id 3F3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.264 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F3M _cell.length_a 66.774 _cell.length_b 66.774 _cell.length_c 124.134 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O13 P2 S' _chem_comp.formula_weight 507.264 _chem_comp.id PPS _chem_comp.mon_nstd_flag . _chem_comp.name "3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S2 OS1 PPS sing 260 n n S2 OS2 PPS doub 261 n n S2 OS3 PPS doub 262 n n S2 O6P PPS sing 263 n n OS1 HO1 PPS sing 264 n n O6P P2 PPS sing 265 n n P2 O4P PPS doub 266 n n P2 O5P PPS sing 267 n n P2 O5' PPS sing 268 n n O5P HO5P PPS sing 269 n n O5' C5' PPS sing 270 n n C5' C4' PPS sing 271 n n C5' "H5'1" PPS sing 272 n n C5' "H5'2" PPS sing 273 n n C4' O4' PPS sing 274 n n C4' C3' PPS sing 275 n n C4' H4' PPS sing 276 n n O4' C1' PPS sing 277 n n C1' N9 PPS sing 278 n n C1' C2' PPS sing 279 n n C1' H1' PPS sing 280 n n N9 C4 PPS sing 281 n y N9 C8 PPS sing 282 n y C4 N3 PPS sing 283 n y C4 C5 PPS doub 284 n y N3 C2 PPS doub 285 n y C2 N1 PPS sing 286 n y C2 H2 PPS sing 287 n n N1 C6 PPS doub 288 n y C6 N6 PPS sing 289 n n C6 C5 PPS sing 290 n y N6 HN61 PPS sing 291 n n N6 HN62 PPS sing 292 n n C5 N7 PPS sing 293 n y N7 C8 PPS doub 294 n y C8 H8 PPS sing 295 n n C2' O2' PPS sing 296 n n C2' C3' PPS sing 297 n n C2' H2' PPS sing 298 n n O2' HO2' PPS sing 299 n n C3' O3' PPS sing 300 n n C3' H3' PPS sing 301 n n O3' P1 PPS sing 302 n n P1 O1P PPS sing 303 n n P1 O2P PPS sing 304 n n P1 O3P PPS doub 305 n n O1P HO1P PPS sing 306 n n O2P HO2P PPS sing 307 n n # _atom_sites.entry_id 3F3M _atom_sites.fract_transf_matrix[1][1] 0.014976 _atom_sites.fract_transf_matrix[1][2] 0.008646 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PPS A 1 300 300 PPS PPS . C 3 HOH A 1 169 1 HOH TIP . C 3 HOH A 2 170 2 HOH TIP . C 3 HOH A 3 171 3 HOH TIP . C 3 HOH A 4 172 4 HOH TIP . C 3 HOH A 5 173 5 HOH TIP . C 3 HOH A 6 174 6 HOH TIP . C 3 HOH A 7 175 7 HOH TIP . C 3 HOH A 8 176 8 HOH TIP . C 3 HOH A 9 177 9 HOH TIP . C 3 HOH A 10 178 10 HOH TIP . C 3 HOH A 11 179 11 HOH TIP . C 3 HOH A 12 180 12 HOH TIP . C 3 HOH A 13 181 13 HOH TIP . C 3 HOH A 14 182 14 HOH TIP . C 3 HOH A 15 183 16 HOH TIP . C 3 HOH A 16 184 17 HOH TIP . C 3 HOH A 17 185 18 HOH TIP . C 3 HOH A 18 186 19 HOH TIP . C 3 HOH A 19 187 20 HOH TIP . C 3 HOH A 20 188 21 HOH TIP . C 3 HOH A 21 189 22 HOH TIP . C 3 HOH A 22 190 23 HOH TIP . C 3 HOH A 23 191 24 HOH TIP . C 3 HOH A 24 192 25 HOH TIP . C 3 HOH A 25 193 27 HOH TIP . C 3 HOH A 26 194 29 HOH TIP . C 3 HOH A 27 195 31 HOH TIP . C 3 HOH A 28 196 32 HOH TIP . C 3 HOH A 29 197 33 HOH TIP . C 3 HOH A 30 198 34 HOH TIP . C 3 HOH A 31 199 35 HOH TIP . C 3 HOH A 32 200 36 HOH TIP . C 3 HOH A 33 201 37 HOH TIP . C 3 HOH A 34 202 38 HOH TIP . C 3 HOH A 35 203 39 HOH TIP . C 3 HOH A 36 204 40 HOH TIP . C 3 HOH A 37 205 41 HOH TIP . C 3 HOH A 38 206 43 HOH TIP . C 3 HOH A 39 207 44 HOH TIP . C 3 HOH A 40 208 45 HOH TIP . C 3 HOH A 41 209 46 HOH TIP . C 3 HOH A 42 210 47 HOH TIP . C 3 HOH A 43 211 48 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S2 PPS . . . B 2 -147.457 -116.43 110.031 1 59.47 ? S2 PPS 300 A 1 HETATM 2 O OS1 PPS . . . B 2 -148.154 -115.303 109.327 1 59.09 ? OS1 PPS 300 A 1 HETATM 3 O OS2 PPS . . . B 2 -146.636 -115.875 111.157 1 58.46 ? OS2 PPS 300 A 1 HETATM 4 O OS3 PPS . . . B 2 -148.473 -117.388 110.579 1 60.02 ? OS3 PPS 300 A 1 HETATM 5 O O6P PPS . . . B 2 -146.6 -117.107 109.107 1 58.83 ? O6P PPS 300 A 1 HETATM 6 P P2 PPS . . . B 2 -146.636 -118.709 108.939 1 56.45 ? P2 PPS 300 A 1 HETATM 7 O O4P PPS . . . B 2 -148.055 -119.132 108.915 1 57.28 ? O4P PPS 300 A 1 HETATM 8 O O5P PPS . . . B 2 -145.774 -119.079 107.794 1 54.65 ? O5P PPS 300 A 1 HETATM 9 O O5' PPS . . . B 2 -145.944 -119.232 110.296 1 56.05 ? O5' PPS 300 A 1 HETATM 10 C C5' PPS . . . B 2 -144.521 -119.181 110.426 1 54.22 ? C5' PPS 300 A 1 HETATM 11 C C4' PPS . . . B 2 -143.939 -120.544 110.808 1 53.57 ? C4' PPS 300 A 1 HETATM 12 O O4' PPS . . . B 2 -144.586 -121 112.011 1 53.38 ? O4' PPS 300 A 1 HETATM 13 C C1' PPS . . . B 2 -145.26 -122.231 111.696 1 52.84 ? C1' PPS 300 A 1 HETATM 14 N N9 PPS . . . B 2 -146.452 -122.41 112.556 1 52 ? N9 PPS 300 A 1 HETATM 15 C C4 PPS . . . B 2 -146.732 -123.48 113.294 1 52.09 ? C4 PPS 300 A 1 HETATM 16 N N3 PPS . . . B 2 -146.133 -124.666 113.472 1 51.38 ? N3 PPS 300 A 1 HETATM 17 C C2 PPS . . . B 2 -146.645 -125.562 114.298 1 49.66 ? C2 PPS 300 A 1 HETATM 18 N N1 PPS . . . B 2 -147.755 -125.327 114.975 1 49.1 ? N1 PPS 300 A 1 HETATM 19 C C6 PPS . . . B 2 -148.409 -124.163 114.848 1 51.28 ? C6 PPS 300 A 1 HETATM 20 N N6 PPS . . . B 2 -149.511 -123.923 115.552 1 50.12 ? N6 PPS 300 A 1 HETATM 21 C C5 PPS . . . B 2 -147.903 -123.199 113.985 1 51.92 ? C5 PPS 300 A 1 HETATM 22 N N7 PPS . . . B 2 -148.291 -121.977 113.633 1 51.5 ? N7 PPS 300 A 1 HETATM 23 C C8 PPS . . . B 2 -147.404 -121.503 112.761 1 50.89 ? C8 PPS 300 A 1 HETATM 24 C C2' PPS . . . B 2 -145.646 -122.062 110.228 1 53.27 ? C2' PPS 300 A 1 HETATM 25 O O2' PPS . . . B 2 -145.924 -123.345 109.661 1 53.57 ? O2' PPS 300 A 1 HETATM 26 C C3' PPS . . . B 2 -144.288 -121.574 109.73 1 53.71 ? C3' PPS 300 A 1 HETATM 27 O O3' PPS . . . B 2 -143.343 -122.646 109.781 1 54.77 ? O3' PPS 300 A 1 HETATM 28 P P1 PPS . . . B 2 -141.982 -122.536 108.93 1 53.87 ? P1 PPS 300 A 1 HETATM 29 O O1P PPS . . . B 2 -140.762 -122.764 109.955 1 55.21 ? O1P PPS 300 A 1 HETATM 30 O O2P PPS . . . B 2 -141.871 -121.253 108.2 1 54.04 ? O2P PPS 300 A 1 HETATM 31 O O3P PPS . . . B 2 -142.015 -123.81 107.947 1 55.02 ? O3P PPS 300 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #