data_3F42
#
_model_server_result.job_id            If4akNM_WrocrOgJL2apyA 
_model_server_result.datetime_utc      '2024-10-25 20:19:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3f42 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":102}' 
#
_entry.id    3F42 
#
_exptl.entry_id    3F42 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3F42 
_cell.length_a            87.129 
_cell.length_b            99.566 
_cell.length_c            45.196 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3F42 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 99.566 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 2 A HIS 0 1_555 A N MSE 3 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C MSE 3 A MSE 1 1_555 A N ASP 4 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale3 A C GLY 14 A GLY 12 1_555 A N MSE 15 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C MSE 15 A MSE 13 1_555 A N LYS 16 A LYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale5 A C GLY 38 A GLY 36 1_555 A N MSE 39 A MSE 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 A C MSE 39 A MSE 37 1_555 A N VAL 40 A VAL 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 A C ALA 65 A ALA 63 1_555 A N MSE 66 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale8 A C MSE 66 A MSE 64 1_555 A N GLN 67 A GLN 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale9 A C LEU 70 A LEU 68 1_555 A N MSE 71 A MSE 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale10 A C MSE 71 A MSE 69 1_555 A N SER 72 A SER 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale11 A C ASN 91 A ASN 89 1_555 A N MSE 92 A MSE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale12 A C MSE 92 A MSE 90 1_555 A N LEU 93 A LEU 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale13 B C GLY 14 B GLY 12 1_555 B N MSE 15 B MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale14 B C MSE 15 B MSE 13 1_555 B N LYS 16 B LYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale15 B C GLY 38 B GLY 36 1_555 B N MSE 39 B MSE 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale16 B C MSE 39 B MSE 37 1_555 B N VAL 40 B VAL 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale17 B C ALA 65 B ALA 63 1_555 B N MSE 66 B MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale18 B C MSE 66 B MSE 64 1_555 B N GLN 67 B GLN 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale19 B C LEU 70 B LEU 68 1_555 B N MSE 71 B MSE 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 B C MSE 71 B MSE 69 1_555 B N SER 72 B SER 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale21 B C ASN 91 B ASN 89 1_555 B N MSE 92 B MSE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale22 B C MSE 92 B MSE 90 1_555 B N LEU 93 B LEU 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     3F42 
_atom_sites.fract_transf_matrix[1][1]    0.011477 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022126 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 101 101 EDO EDO . 
D 2 EDO A 1 103 103 EDO EDO . 
E 2 EDO B 1 102 102 EDO EDO . 
F 2 EDO B 1 101 101 EDO EDO . 
G 3 HOH A 1 98 1 HOH HOH . 
G 3 HOH A 2 99 3 HOH HOH . 
G 3 HOH A 3 100 100 HOH HOH . 
G 3 HOH A 4 102 6 HOH HOH . 
G 3 HOH A 5 104 7 HOH HOH . 
G 3 HOH A 6 105 105 HOH HOH . 
G 3 HOH A 7 106 106 HOH HOH . 
G 3 HOH A 8 107 107 HOH HOH . 
G 3 HOH A 9 108 8 HOH HOH . 
G 3 HOH A 10 109 9 HOH HOH . 
G 3 HOH A 11 110 10 HOH HOH . 
G 3 HOH A 12 111 111 HOH HOH . 
G 3 HOH A 13 112 112 HOH HOH . 
G 3 HOH A 14 113 12 HOH HOH . 
G 3 HOH A 15 114 14 HOH HOH . 
G 3 HOH A 16 115 15 HOH HOH . 
G 3 HOH A 17 116 16 HOH HOH . 
G 3 HOH A 18 117 17 HOH HOH . 
G 3 HOH A 19 118 18 HOH HOH . 
G 3 HOH A 20 119 119 HOH HOH . 
G 3 HOH A 21 120 19 HOH HOH . 
G 3 HOH A 22 121 21 HOH HOH . 
G 3 HOH A 23 122 122 HOH HOH . 
G 3 HOH A 24 123 22 HOH HOH . 
G 3 HOH A 25 124 23 HOH HOH . 
G 3 HOH A 26 125 26 HOH HOH . 
G 3 HOH A 27 126 126 HOH HOH . 
G 3 HOH A 28 127 127 HOH HOH . 
G 3 HOH A 29 128 128 HOH HOH . 
G 3 HOH A 30 129 31 HOH HOH . 
G 3 HOH A 31 130 33 HOH HOH . 
G 3 HOH A 32 131 131 HOH HOH . 
G 3 HOH A 33 132 35 HOH HOH . 
G 3 HOH A 34 133 133 HOH HOH . 
G 3 HOH A 35 134 134 HOH HOH . 
G 3 HOH A 36 135 36 HOH HOH . 
G 3 HOH A 37 136 37 HOH HOH . 
G 3 HOH A 38 137 39 HOH HOH . 
G 3 HOH A 39 138 138 HOH HOH . 
G 3 HOH A 40 139 139 HOH HOH . 
G 3 HOH A 41 140 40 HOH HOH . 
G 3 HOH A 42 141 141 HOH HOH . 
G 3 HOH A 43 142 142 HOH HOH . 
G 3 HOH A 44 143 41 HOH HOH . 
G 3 HOH A 45 144 42 HOH HOH . 
G 3 HOH A 46 145 43 HOH HOH . 
G 3 HOH A 47 146 44 HOH HOH . 
G 3 HOH A 48 147 45 HOH HOH . 
G 3 HOH A 49 148 46 HOH HOH . 
G 3 HOH A 50 149 47 HOH HOH . 
G 3 HOH A 51 150 51 HOH HOH . 
G 3 HOH A 52 151 53 HOH HOH . 
G 3 HOH A 53 152 55 HOH HOH . 
G 3 HOH A 54 153 56 HOH HOH . 
G 3 HOH A 55 154 57 HOH HOH . 
G 3 HOH A 56 155 59 HOH HOH . 
G 3 HOH A 57 156 60 HOH HOH . 
G 3 HOH A 58 157 61 HOH HOH . 
G 3 HOH A 59 158 62 HOH HOH . 
G 3 HOH A 60 159 63 HOH HOH . 
G 3 HOH A 61 160 64 HOH HOH . 
G 3 HOH A 62 161 65 HOH HOH . 
G 3 HOH A 63 162 68 HOH HOH . 
G 3 HOH A 64 163 70 HOH HOH . 
G 3 HOH A 65 164 71 HOH HOH . 
G 3 HOH A 66 165 72 HOH HOH . 
G 3 HOH A 67 166 73 HOH HOH . 
G 3 HOH A 68 167 74 HOH HOH . 
G 3 HOH A 69 168 75 HOH HOH . 
G 3 HOH A 70 169 77 HOH HOH . 
G 3 HOH A 71 170 78 HOH HOH . 
G 3 HOH A 72 171 79 HOH HOH . 
G 3 HOH A 73 172 80 HOH HOH . 
G 3 HOH A 74 173 82 HOH HOH . 
G 3 HOH A 75 174 83 HOH HOH . 
G 3 HOH A 76 175 84 HOH HOH . 
G 3 HOH A 77 176 85 HOH HOH . 
G 3 HOH A 78 177 86 HOH HOH . 
G 3 HOH A 79 178 88 HOH HOH . 
G 3 HOH A 80 179 91 HOH HOH . 
G 3 HOH A 81 180 93 HOH HOH . 
G 3 HOH A 82 181 94 HOH HOH . 
G 3 HOH A 83 182 95 HOH HOH . 
G 3 HOH A 84 183 96 HOH HOH . 
G 3 HOH A 85 184 97 HOH HOH . 
G 3 HOH A 86 185 110 HOH HOH . 
G 3 HOH A 87 186 132 HOH HOH . 
H 3 HOH B 1 98 98 HOH HOH . 
H 3 HOH B 2 99 99 HOH HOH . 
H 3 HOH B 3 100 2 HOH HOH . 
H 3 HOH B 4 103 103 HOH HOH . 
H 3 HOH B 5 104 104 HOH HOH . 
H 3 HOH B 6 105 4 HOH HOH . 
H 3 HOH B 7 106 5 HOH HOH . 
H 3 HOH B 8 107 11 HOH HOH . 
H 3 HOH B 9 108 108 HOH HOH . 
H 3 HOH B 10 109 109 HOH HOH . 
H 3 HOH B 11 111 13 HOH HOH . 
H 3 HOH B 12 112 20 HOH HOH . 
H 3 HOH B 13 113 113 HOH HOH . 
H 3 HOH B 14 114 114 HOH HOH . 
H 3 HOH B 15 115 115 HOH HOH . 
H 3 HOH B 16 116 116 HOH HOH . 
H 3 HOH B 17 117 117 HOH HOH . 
H 3 HOH B 18 118 118 HOH HOH . 
H 3 HOH B 19 119 24 HOH HOH . 
H 3 HOH B 20 120 120 HOH HOH . 
H 3 HOH B 21 121 121 HOH HOH . 
H 3 HOH B 22 122 25 HOH HOH . 
H 3 HOH B 23 123 123 HOH HOH . 
H 3 HOH B 24 124 124 HOH HOH . 
H 3 HOH B 25 125 125 HOH HOH . 
H 3 HOH B 26 126 27 HOH HOH . 
H 3 HOH B 27 127 28 HOH HOH . 
H 3 HOH B 28 128 29 HOH HOH . 
H 3 HOH B 29 129 129 HOH HOH . 
H 3 HOH B 30 130 130 HOH HOH . 
H 3 HOH B 31 131 30 HOH HOH . 
H 3 HOH B 32 133 32 HOH HOH . 
H 3 HOH B 33 134 34 HOH HOH . 
H 3 HOH B 34 135 135 HOH HOH . 
H 3 HOH B 35 136 136 HOH HOH . 
H 3 HOH B 36 137 137 HOH HOH . 
H 3 HOH B 37 138 38 HOH HOH . 
H 3 HOH B 38 139 48 HOH HOH . 
H 3 HOH B 39 140 140 HOH HOH . 
H 3 HOH B 40 141 49 HOH HOH . 
H 3 HOH B 41 142 50 HOH HOH . 
H 3 HOH B 42 143 52 HOH HOH . 
H 3 HOH B 43 144 54 HOH HOH . 
H 3 HOH B 44 145 58 HOH HOH . 
H 3 HOH B 45 146 66 HOH HOH . 
H 3 HOH B 46 147 67 HOH HOH . 
H 3 HOH B 47 148 69 HOH HOH . 
H 3 HOH B 48 149 76 HOH HOH . 
H 3 HOH B 49 150 81 HOH HOH . 
H 3 HOH B 50 151 87 HOH HOH . 
H 3 HOH B 51 152 89 HOH HOH . 
H 3 HOH B 52 153 90 HOH HOH . 
H 3 HOH B 53 154 92 HOH HOH . 
H 3 HOH B 54 155 101 HOH HOH . 
H 3 HOH B 55 156 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 2 18.622 30.731 14.207 1 44.29 ? C1 EDO 102 B 1 
HETATM 2 O O1 EDO . . . E 2 19.937 30.988 13.685 1 42.93 ? O1 EDO 102 B 1 
HETATM 3 C C2 EDO . . . E 2 18.708 29.797 15.418 1 42.84 ? C2 EDO 102 B 1 
HETATM 4 O O2 EDO . . . E 2 19.87 28.935 15.324 1 43.55 ? O2 EDO 102 B 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#