data_3F4I # _model_server_result.job_id qspHD1mgZdTH1GNh81SrwQ _model_server_result.datetime_utc '2024-10-14 01:26:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f4i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":705}' # _entry.id 3F4I # _exptl.entry_id 3F4I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.85 _cell.angle_gamma 90 _cell.entry_id 3F4I _cell.length_a 89.777 _cell.length_b 86.703 _cell.length_c 81.692 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F4I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 81.450587 0 81.26656 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3F4I _atom_sites.fract_transf_matrix[1][1] 0.011139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001141 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MSE A 1 601 601 MSE MSE . C 3 BOG A 1 701 701 BOG BOG . D 3 BOG A 1 702 702 BOG BOG . E 3 BOG A 1 703 703 BOG BOG . F 3 BOG A 1 704 704 BOG BOG . G 3 BOG A 1 705 705 BOG BOG . H 4 NA A 1 751 751 NA NA . I 4 NA A 1 752 752 NA NA . J 5 HOH A 1 520 1 HOH HOH . J 5 HOH A 2 521 2 HOH HOH . J 5 HOH A 3 522 3 HOH HOH . J 5 HOH A 4 523 4 HOH HOH . J 5 HOH A 5 524 5 HOH HOH . J 5 HOH A 6 525 6 HOH HOH . J 5 HOH A 7 526 7 HOH HOH . J 5 HOH A 8 527 8 HOH HOH . J 5 HOH A 9 528 9 HOH HOH . J 5 HOH A 10 529 10 HOH HOH . J 5 HOH A 11 530 11 HOH HOH . J 5 HOH A 12 531 12 HOH HOH . J 5 HOH A 13 532 13 HOH HOH . J 5 HOH A 14 533 14 HOH HOH . J 5 HOH A 15 534 15 HOH HOH . J 5 HOH A 16 535 16 HOH HOH . J 5 HOH A 17 536 17 HOH HOH . J 5 HOH A 18 537 18 HOH HOH . J 5 HOH A 19 538 19 HOH HOH . J 5 HOH A 20 539 20 HOH HOH . J 5 HOH A 21 540 21 HOH HOH . J 5 HOH A 22 541 22 HOH HOH . J 5 HOH A 23 542 23 HOH HOH . J 5 HOH A 24 543 24 HOH HOH . J 5 HOH A 25 544 25 HOH HOH . J 5 HOH A 26 545 26 HOH HOH . J 5 HOH A 27 546 27 HOH HOH . J 5 HOH A 28 547 28 HOH HOH . J 5 HOH A 29 548 29 HOH HOH . J 5 HOH A 30 549 30 HOH HOH . J 5 HOH A 31 550 31 HOH HOH . J 5 HOH A 32 551 32 HOH HOH . J 5 HOH A 33 552 33 HOH HOH . J 5 HOH A 34 553 34 HOH HOH . J 5 HOH A 35 554 35 HOH HOH . J 5 HOH A 36 555 36 HOH HOH . J 5 HOH A 37 556 37 HOH HOH . J 5 HOH A 38 557 38 HOH HOH . J 5 HOH A 39 558 39 HOH HOH . J 5 HOH A 40 559 40 HOH HOH . J 5 HOH A 41 560 41 HOH HOH . J 5 HOH A 42 561 42 HOH HOH . J 5 HOH A 43 562 43 HOH HOH . J 5 HOH A 44 563 44 HOH HOH . J 5 HOH A 45 564 45 HOH HOH . J 5 HOH A 46 565 46 HOH HOH . J 5 HOH A 47 566 47 HOH HOH . J 5 HOH A 48 567 48 HOH HOH . J 5 HOH A 49 568 49 HOH HOH . J 5 HOH A 50 569 50 HOH HOH . J 5 HOH A 51 570 51 HOH HOH . J 5 HOH A 52 571 52 HOH HOH . J 5 HOH A 53 572 53 HOH HOH . J 5 HOH A 54 573 54 HOH HOH . J 5 HOH A 55 574 55 HOH HOH . J 5 HOH A 56 575 56 HOH HOH . J 5 HOH A 57 576 57 HOH HOH . J 5 HOH A 58 577 58 HOH HOH . J 5 HOH A 59 578 59 HOH HOH . J 5 HOH A 60 579 60 HOH HOH . J 5 HOH A 61 580 61 HOH HOH . J 5 HOH A 62 581 62 HOH HOH . J 5 HOH A 63 582 63 HOH HOH . J 5 HOH A 64 583 64 HOH HOH . J 5 HOH A 65 584 65 HOH HOH . J 5 HOH A 66 585 66 HOH HOH . J 5 HOH A 67 586 67 HOH HOH . J 5 HOH A 68 587 68 HOH HOH . J 5 HOH A 69 588 69 HOH HOH . J 5 HOH A 70 589 70 HOH HOH . J 5 HOH A 71 590 71 HOH HOH . J 5 HOH A 72 591 72 HOH HOH . J 5 HOH A 73 592 73 HOH HOH . J 5 HOH A 74 593 74 HOH HOH . J 5 HOH A 75 594 75 HOH HOH . J 5 HOH A 76 595 76 HOH HOH . J 5 HOH A 77 596 77 HOH HOH . J 5 HOH A 78 597 78 HOH HOH . J 5 HOH A 79 598 79 HOH HOH . J 5 HOH A 80 599 80 HOH HOH . J 5 HOH A 81 600 81 HOH HOH . J 5 HOH A 82 602 82 HOH HOH . J 5 HOH A 83 603 83 HOH HOH . J 5 HOH A 84 604 84 HOH HOH . J 5 HOH A 85 605 85 HOH HOH . J 5 HOH A 86 606 86 HOH HOH . J 5 HOH A 87 607 87 HOH HOH . J 5 HOH A 88 608 88 HOH HOH . J 5 HOH A 89 609 89 HOH HOH . J 5 HOH A 90 610 90 HOH HOH . J 5 HOH A 91 611 91 HOH HOH . J 5 HOH A 92 612 92 HOH HOH . J 5 HOH A 93 613 93 HOH HOH . J 5 HOH A 94 614 94 HOH HOH . J 5 HOH A 95 615 95 HOH HOH . J 5 HOH A 96 616 96 HOH HOH . J 5 HOH A 97 617 97 HOH HOH . J 5 HOH A 98 618 98 HOH HOH . J 5 HOH A 99 619 99 HOH HOH . J 5 HOH A 100 620 100 HOH HOH . J 5 HOH A 101 621 101 HOH HOH . J 5 HOH A 102 622 102 HOH HOH . J 5 HOH A 103 623 103 HOH HOH . J 5 HOH A 104 624 104 HOH HOH . J 5 HOH A 105 625 105 HOH HOH . J 5 HOH A 106 626 106 HOH HOH . J 5 HOH A 107 627 107 HOH HOH . J 5 HOH A 108 628 108 HOH HOH . J 5 HOH A 109 629 109 HOH HOH . J 5 HOH A 110 630 110 HOH HOH . J 5 HOH A 111 631 111 HOH HOH . J 5 HOH A 112 632 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . G 3 51.285 14.213 36.069 1 69.95 ? C1 BOG 705 A 1 HETATM 2 O O1 BOG . . . G 3 50.864 14.793 34.838 1 74.45 ? O1 BOG 705 A 1 HETATM 3 C C2 BOG . . . G 3 52.395 13.21 35.78 1 72.83 ? C2 BOG 705 A 1 HETATM 4 O O2 BOG . . . G 3 51.847 12.09 35.074 1 85.11 ? O2 BOG 705 A 1 HETATM 5 C C3 BOG . . . G 3 53.055 12.725 37.065 1 80.32 ? C3 BOG 705 A 1 HETATM 6 O O3 BOG . . . G 3 54.212 11.942 36.743 1 72.43 ? O3 BOG 705 A 1 HETATM 7 C C4 BOG . . . G 3 53.46 13.896 37.951 1 78.11 ? C4 BOG 705 A 1 HETATM 8 O O4 BOG . . . G 3 53.895 13.404 39.223 1 75.79 ? O4 BOG 705 A 1 HETATM 9 C C5 BOG . . . G 3 52.302 14.868 38.145 1 65.38 ? C5 BOG 705 A 1 HETATM 10 O O5 BOG . . . G 3 51.784 15.275 36.881 1 69.32 ? O5 BOG 705 A 1 HETATM 11 C C6 BOG . . . G 3 52.752 16.11 38.905 1 63.89 ? C6 BOG 705 A 1 HETATM 12 O O6 BOG . . . G 3 53.724 16.825 38.132 1 69.92 ? O6 BOG 705 A 1 HETATM 13 C C1' BOG . . . G 3 49.477 14.577 34.594 1 65.66 ? C1' BOG 705 A 1 HETATM 14 C C2' BOG . . . G 3 48.848 15.854 34.05 1 60.23 ? C2' BOG 705 A 1 HETATM 15 C C3' BOG . . . G 3 47.745 16.345 34.981 1 52.68 ? C3' BOG 705 A 1 HETATM 16 C C4' BOG . . . G 3 47.336 17.766 34.621 1 48.24 ? C4' BOG 705 A 1 HETATM 17 C C5' BOG . . . G 3 45.825 17.889 34.477 1 48.34 ? C5' BOG 705 A 1 HETATM 18 C C6' BOG . . . G 3 45.128 18.211 35.792 1 39.9 ? C6' BOG 705 A 1 HETATM 19 C C7' BOG . . . G 3 43.88 19.048 35.523 1 37.11 ? C7' BOG 705 A 1 HETATM 20 C C8' BOG . . . G 3 43.06 19.26 36.776 1 50.72 ? C8' BOG 705 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #