data_3F4J # _model_server_result.job_id 1iWDRIKjOkbourNzwcbXvw _model_server_result.datetime_utc '2024-11-22 12:16:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 3F4J # _exptl.entry_id 3F4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.27 _cell.angle_gamma 90 _cell.entry_id 3F4J _cell.length_a 90.06 _cell.length_b 86.55 _cell.length_c 81.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 82.578881 0 81.105705 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 155 n n N H GLY sing 156 n n N H2 GLY sing 157 n n CA C GLY sing 158 n n CA HA2 GLY sing 159 n n CA HA3 GLY sing 160 n n C O GLY doub 161 n n C OXT GLY sing 162 n n OXT HXT GLY sing 163 n n # _atom_sites.entry_id 3F4J _atom_sites.fract_transf_matrix[1][1] 0.011104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001024 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY A 1 601 601 GLY GLY . C 3 BOG A 1 701 701 BOG BOG . D 3 BOG A 1 702 702 BOG BOG . E 3 BOG A 1 703 703 BOG BOG . F 3 BOG A 1 704 704 BOG BOG . G 4 NA A 1 751 751 NA NA . H 4 NA A 1 752 752 NA NA . I 5 HOH A 1 602 1 HOH HOH . I 5 HOH A 2 603 2 HOH HOH . I 5 HOH A 3 604 3 HOH HOH . I 5 HOH A 4 605 4 HOH HOH . I 5 HOH A 5 606 5 HOH HOH . I 5 HOH A 6 607 6 HOH HOH . I 5 HOH A 7 608 7 HOH HOH . I 5 HOH A 8 609 8 HOH HOH . I 5 HOH A 9 610 9 HOH HOH . I 5 HOH A 10 611 10 HOH HOH . I 5 HOH A 11 612 11 HOH HOH . I 5 HOH A 12 613 12 HOH HOH . I 5 HOH A 13 614 13 HOH HOH . I 5 HOH A 14 615 14 HOH HOH . I 5 HOH A 15 616 15 HOH HOH . I 5 HOH A 16 617 16 HOH HOH . I 5 HOH A 17 618 17 HOH HOH . I 5 HOH A 18 619 18 HOH HOH . I 5 HOH A 19 620 19 HOH HOH . I 5 HOH A 20 621 20 HOH HOH . I 5 HOH A 21 622 21 HOH HOH . I 5 HOH A 22 623 22 HOH HOH . I 5 HOH A 23 624 23 HOH HOH . I 5 HOH A 24 625 24 HOH HOH . I 5 HOH A 25 626 25 HOH HOH . I 5 HOH A 26 627 26 HOH HOH . I 5 HOH A 27 628 27 HOH HOH . I 5 HOH A 28 629 28 HOH HOH . I 5 HOH A 29 630 29 HOH HOH . I 5 HOH A 30 631 30 HOH HOH . I 5 HOH A 31 632 31 HOH HOH . I 5 HOH A 32 633 32 HOH HOH . I 5 HOH A 33 634 33 HOH HOH . I 5 HOH A 34 635 34 HOH HOH . I 5 HOH A 35 636 35 HOH HOH . I 5 HOH A 36 637 36 HOH HOH . I 5 HOH A 37 638 37 HOH HOH . I 5 HOH A 38 639 38 HOH HOH . I 5 HOH A 39 640 39 HOH HOH . I 5 HOH A 40 641 40 HOH HOH . I 5 HOH A 41 642 41 HOH HOH . I 5 HOH A 42 643 42 HOH HOH . I 5 HOH A 43 644 43 HOH HOH . I 5 HOH A 44 645 44 HOH HOH . I 5 HOH A 45 646 45 HOH HOH . I 5 HOH A 46 647 46 HOH HOH . I 5 HOH A 47 648 47 HOH HOH . I 5 HOH A 48 649 48 HOH HOH . I 5 HOH A 49 650 49 HOH HOH . I 5 HOH A 50 651 50 HOH HOH . I 5 HOH A 51 652 51 HOH HOH . I 5 HOH A 52 653 52 HOH HOH . I 5 HOH A 53 654 53 HOH HOH . I 5 HOH A 54 655 54 HOH HOH . I 5 HOH A 55 656 55 HOH HOH . I 5 HOH A 56 657 56 HOH HOH . I 5 HOH A 57 658 57 HOH HOH . I 5 HOH A 58 659 58 HOH HOH . I 5 HOH A 59 660 59 HOH HOH . I 5 HOH A 60 661 60 HOH HOH . I 5 HOH A 61 662 61 HOH HOH . I 5 HOH A 62 663 62 HOH HOH . I 5 HOH A 63 664 63 HOH HOH . I 5 HOH A 64 665 64 HOH HOH . I 5 HOH A 65 666 65 HOH HOH . I 5 HOH A 66 667 66 HOH HOH . I 5 HOH A 67 668 67 HOH HOH . I 5 HOH A 68 669 68 HOH HOH . I 5 HOH A 69 670 69 HOH HOH . I 5 HOH A 70 671 70 HOH HOH . I 5 HOH A 71 672 71 HOH HOH . I 5 HOH A 72 673 72 HOH HOH . I 5 HOH A 73 674 73 HOH HOH . I 5 HOH A 74 675 74 HOH HOH . I 5 HOH A 75 676 75 HOH HOH . I 5 HOH A 76 677 76 HOH HOH . I 5 HOH A 77 678 77 HOH HOH . I 5 HOH A 78 679 78 HOH HOH . I 5 HOH A 79 680 79 HOH HOH . I 5 HOH A 80 681 80 HOH HOH . I 5 HOH A 81 682 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . B 2 25.882 32.385 19.194 1 34.21 ? N GLY 601 A 1 HETATM 2 C CA GLY . . . B 2 27.203 31.783 19.163 1 34.52 ? CA GLY 601 A 1 HETATM 3 C C GLY . . . B 2 27.244 30.447 18.451 1 36.63 ? C GLY 601 A 1 HETATM 4 O O GLY . . . B 2 28.307 29.859 18.23 1 39.76 ? O GLY 601 A 1 HETATM 5 O OXT GLY . . . B 2 26.209 29.899 18.081 1 33.29 ? OXT GLY 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #