data_3F4J # _model_server_result.job_id s_SWqL_oKlIbemsOhpWLJw _model_server_result.datetime_utc '2024-11-22 11:57:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 3F4J # _exptl.entry_id 3F4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.27 _cell.angle_gamma 90 _cell.entry_id 3F4J _cell.length_a 90.06 _cell.length_b 86.55 _cell.length_c 81.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 82.578881 0 81.105705 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3F4J _atom_sites.fract_transf_matrix[1][1] 0.011104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001024 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY A 1 601 601 GLY GLY . C 3 BOG A 1 701 701 BOG BOG . D 3 BOG A 1 702 702 BOG BOG . E 3 BOG A 1 703 703 BOG BOG . F 3 BOG A 1 704 704 BOG BOG . G 4 NA A 1 751 751 NA NA . H 4 NA A 1 752 752 NA NA . I 5 HOH A 1 602 1 HOH HOH . I 5 HOH A 2 603 2 HOH HOH . I 5 HOH A 3 604 3 HOH HOH . I 5 HOH A 4 605 4 HOH HOH . I 5 HOH A 5 606 5 HOH HOH . I 5 HOH A 6 607 6 HOH HOH . I 5 HOH A 7 608 7 HOH HOH . I 5 HOH A 8 609 8 HOH HOH . I 5 HOH A 9 610 9 HOH HOH . I 5 HOH A 10 611 10 HOH HOH . I 5 HOH A 11 612 11 HOH HOH . I 5 HOH A 12 613 12 HOH HOH . I 5 HOH A 13 614 13 HOH HOH . I 5 HOH A 14 615 14 HOH HOH . I 5 HOH A 15 616 15 HOH HOH . I 5 HOH A 16 617 16 HOH HOH . I 5 HOH A 17 618 17 HOH HOH . I 5 HOH A 18 619 18 HOH HOH . I 5 HOH A 19 620 19 HOH HOH . I 5 HOH A 20 621 20 HOH HOH . I 5 HOH A 21 622 21 HOH HOH . I 5 HOH A 22 623 22 HOH HOH . I 5 HOH A 23 624 23 HOH HOH . I 5 HOH A 24 625 24 HOH HOH . I 5 HOH A 25 626 25 HOH HOH . I 5 HOH A 26 627 26 HOH HOH . I 5 HOH A 27 628 27 HOH HOH . I 5 HOH A 28 629 28 HOH HOH . I 5 HOH A 29 630 29 HOH HOH . I 5 HOH A 30 631 30 HOH HOH . I 5 HOH A 31 632 31 HOH HOH . I 5 HOH A 32 633 32 HOH HOH . I 5 HOH A 33 634 33 HOH HOH . I 5 HOH A 34 635 34 HOH HOH . I 5 HOH A 35 636 35 HOH HOH . I 5 HOH A 36 637 36 HOH HOH . I 5 HOH A 37 638 37 HOH HOH . I 5 HOH A 38 639 38 HOH HOH . I 5 HOH A 39 640 39 HOH HOH . I 5 HOH A 40 641 40 HOH HOH . I 5 HOH A 41 642 41 HOH HOH . I 5 HOH A 42 643 42 HOH HOH . I 5 HOH A 43 644 43 HOH HOH . I 5 HOH A 44 645 44 HOH HOH . I 5 HOH A 45 646 45 HOH HOH . I 5 HOH A 46 647 46 HOH HOH . I 5 HOH A 47 648 47 HOH HOH . I 5 HOH A 48 649 48 HOH HOH . I 5 HOH A 49 650 49 HOH HOH . I 5 HOH A 50 651 50 HOH HOH . I 5 HOH A 51 652 51 HOH HOH . I 5 HOH A 52 653 52 HOH HOH . I 5 HOH A 53 654 53 HOH HOH . I 5 HOH A 54 655 54 HOH HOH . I 5 HOH A 55 656 55 HOH HOH . I 5 HOH A 56 657 56 HOH HOH . I 5 HOH A 57 658 57 HOH HOH . I 5 HOH A 58 659 58 HOH HOH . I 5 HOH A 59 660 59 HOH HOH . I 5 HOH A 60 661 60 HOH HOH . I 5 HOH A 61 662 61 HOH HOH . I 5 HOH A 62 663 62 HOH HOH . I 5 HOH A 63 664 63 HOH HOH . I 5 HOH A 64 665 64 HOH HOH . I 5 HOH A 65 666 65 HOH HOH . I 5 HOH A 66 667 66 HOH HOH . I 5 HOH A 67 668 67 HOH HOH . I 5 HOH A 68 669 68 HOH HOH . I 5 HOH A 69 670 69 HOH HOH . I 5 HOH A 70 671 70 HOH HOH . I 5 HOH A 71 672 71 HOH HOH . I 5 HOH A 72 673 72 HOH HOH . I 5 HOH A 73 674 73 HOH HOH . I 5 HOH A 74 675 74 HOH HOH . I 5 HOH A 75 676 75 HOH HOH . I 5 HOH A 76 677 76 HOH HOH . I 5 HOH A 77 678 77 HOH HOH . I 5 HOH A 78 679 78 HOH HOH . I 5 HOH A 79 680 79 HOH HOH . I 5 HOH A 80 681 80 HOH HOH . I 5 HOH A 81 682 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 3 0.202 42.875 12.662 1 79.34 ? C1 BOG 701 A 1 HETATM 2 O O1 BOG . . . C 3 0.731 41.6 13.025 1 81.08 ? O1 BOG 701 A 1 HETATM 3 C C2 BOG . . . C 3 -1.314 42.883 12.817 1 76.64 ? C2 BOG 701 A 1 HETATM 4 O O2 BOG . . . C 3 -1.887 41.836 12.026 1 73.69 ? O2 BOG 701 A 1 HETATM 5 C C3 BOG . . . C 3 -1.85 44.231 12.355 1 75.59 ? C3 BOG 701 A 1 HETATM 6 O O3 BOG . . . C 3 -3.269 44.279 12.548 1 75.97 ? O3 BOG 701 A 1 HETATM 7 C C4 BOG . . . C 3 -1.166 45.35 13.143 1 77.11 ? C4 BOG 701 A 1 HETATM 8 O O4 BOG . . . C 3 -1.556 46.629 12.622 1 72.81 ? O4 BOG 701 A 1 HETATM 9 C C5 BOG . . . C 3 0.357 45.209 13.096 1 77.73 ? C5 BOG 701 A 1 HETATM 10 O O5 BOG . . . C 3 0.755 43.893 13.497 1 77.7 ? O5 BOG 701 A 1 HETATM 11 C C6 BOG . . . C 3 1.056 46.24 13.98 1 72.88 ? C6 BOG 701 A 1 HETATM 12 O O6 BOG . . . C 3 0.848 45.941 15.366 1 67.45 ? O6 BOG 701 A 1 HETATM 13 C C1' BOG . . . C 3 2.111 41.489 12.681 1 76.49 ? C1' BOG 701 A 1 HETATM 14 C C2' BOG . . . C 3 2.585 40.055 12.89 1 78.47 ? C2' BOG 701 A 1 HETATM 15 C C3' BOG . . . C 3 3.196 39.856 14.271 1 70.26 ? C3' BOG 701 A 1 HETATM 16 C C4' BOG . . . C 3 3.482 38.381 14.536 1 77.19 ? C4' BOG 701 A 1 HETATM 17 C C5' BOG . . . C 3 4.187 38.204 15.875 1 72.83 ? C5' BOG 701 A 1 HETATM 18 C C6' BOG . . . C 3 3.751 36.92 16.57 1 73.41 ? C6' BOG 701 A 1 HETATM 19 C C7' BOG . . . C 3 4.34 36.839 17.975 1 66.83 ? C7' BOG 701 A 1 HETATM 20 C C8' BOG . . . C 3 3.664 35.763 18.795 1 69.73 ? C8' BOG 701 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #