data_3F50 # _model_server_result.job_id CNteY8-Gq8HNsfh2IKadTA _model_server_result.datetime_utc '2025-08-31 06:28:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":38}' # _entry.id 3F50 # _exptl.entry_id 3F50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F50 _cell.length_a 84.945 _cell.length_b 84.945 _cell.length_c 84.945 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLU 5 B GLU 4 1_555 B N XCP 6 B XCP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 B C XCP 6 B XCP 5 1_555 B N TRP 7 B TRP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 B C ASP 8 B ASP 7 1_555 B N XPC 9 B XPC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 B C XPC 9 B XPC 8 1_555 B N ALA 10 B ALA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 B C ALA 12 B ALA 11 1_555 B N B3E 13 B B3E 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 B C B3E 13 B B3E 12 1_555 B N TYR 14 B TYR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 B C ALA 15 B ALA 14 1_555 B N XCP 16 B XCP 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C XCP 16 B XCP 15 1_555 B N ARG 17 B ARG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale9 B C GLU 19 B GLU 18 1_555 B N XCP 20 B XCP 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 B C XCP 20 B XCP 19 1_555 B N LEU 21 B LEU 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale11 B C ILE 22 B ILE 21 1_555 B N XPC 23 B XPC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale12 B C XPC 23 B XPC 22 1_555 B N ALA 24 B ALA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale13 B C GLN 26 B GLN 25 1_555 B N B3E 27 B B3E 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 B C B3E 27 B B3E 26 1_555 B N GLN 28 B GLN 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C GLN 29 B GLN 28 1_555 B N B3E 30 B B3E 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 B C B3E 30 B B3E 29 1_555 B N LYS 31 B LYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale17 B C GLU 33 B GLU 32 1_555 B N XCP 34 B XCP 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale18 B C XCP 34 B XCP 33 1_555 B N ALA 35 B ALA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale19 B C LEU 36 B LEU 35 1_555 B N XPC 37 B XPC 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale20 B C XPC 37 B XPC 36 1_555 B N GLU 38 B GLU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 162 n n C1 C2 GOL sing 163 n n C1 H11 GOL sing 164 n n C1 H12 GOL sing 165 n n O1 HO1 GOL sing 166 n n C2 O2 GOL sing 167 n n C2 C3 GOL sing 168 n n C2 H2 GOL sing 169 n n O2 HO2 GOL sing 170 n n C3 O3 GOL sing 171 n n C3 H31 GOL sing 172 n n C3 H32 GOL sing 173 n n O3 HO3 GOL sing 174 n n # _atom_sites.entry_id 3F50 _atom_sites.fract_transf_matrix[1][1] 0.011772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 38 1 GOL GOL . D 4 HOH A 1 39 5 HOH HOH . D 4 HOH A 2 40 6 HOH HOH . E 4 HOH B 1 40 1 HOH HOH . E 4 HOH B 2 41 2 HOH HOH . E 4 HOH B 3 42 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 7.809 17.24 12.765 1 97.85 ? C1 GOL 38 A 1 HETATM 2 O O1 GOL . . . C 3 6.964 17.393 11.643 1 97.75 ? O1 GOL 38 A 1 HETATM 3 C C2 GOL . . . C 3 7.213 17.892 14.014 1 97.46 ? C2 GOL 38 A 1 HETATM 4 O O2 GOL . . . C 3 7.097 19.288 13.83 1 98.25 ? O2 GOL 38 A 1 HETATM 5 C C3 GOL . . . C 3 8.063 17.596 15.253 1 96.6 ? C3 GOL 38 A 1 HETATM 6 O O3 GOL . . . C 3 9.323 17.093 14.877 1 95 ? O3 GOL 38 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #