data_3F52 # _model_server_result.job_id dBXfwvaJ3X-02jmD8qfQ2w _model_server_result.datetime_utc '2024-12-21 12:41:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 3F52 # _exptl.entry_id 3F52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F52 _cell.length_a 55.08 _cell.length_b 55.08 _cell.length_c 129.61 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 113 n n C1 C2 GOL sing 114 n n C1 H11 GOL sing 115 n n C1 H12 GOL sing 116 n n O1 HO1 GOL sing 117 n n C2 O2 GOL sing 118 n n C2 C3 GOL sing 119 n n C2 H2 GOL sing 120 n n O2 HO2 GOL sing 121 n n C3 O3 GOL sing 122 n n C3 H31 GOL sing 123 n n C3 H32 GOL sing 124 n n O3 HO3 GOL sing 125 n n # _atom_sites.entry_id 3F52 _atom_sites.fract_transf_matrix[1][1] 0.018155 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 500 500 GOL GOL . D 2 GOL A 1 501 501 GOL GOL . E 2 GOL E 1 502 502 GOL GOL . F 2 GOL E 1 503 503 GOL GOL . G 2 GOL E 1 504 504 GOL GOL . H 3 HOH A 1 118 1 HOH HOH . H 3 HOH A 2 119 119 HOH HOH . H 3 HOH A 3 120 2 HOH HOH . H 3 HOH A 4 121 4 HOH HOH . H 3 HOH A 5 122 5 HOH HOH . H 3 HOH A 6 123 7 HOH HOH . H 3 HOH A 7 124 8 HOH HOH . H 3 HOH A 8 125 9 HOH HOH . H 3 HOH A 9 126 14 HOH HOH . H 3 HOH A 10 127 15 HOH HOH . H 3 HOH A 11 128 17 HOH HOH . H 3 HOH A 12 129 18 HOH HOH . H 3 HOH A 13 130 20 HOH HOH . H 3 HOH A 14 131 21 HOH HOH . H 3 HOH A 15 133 133 HOH HOH . H 3 HOH A 16 135 135 HOH HOH . H 3 HOH A 17 136 27 HOH HOH . H 3 HOH A 18 137 28 HOH HOH . H 3 HOH A 19 139 31 HOH HOH . H 3 HOH A 20 140 140 HOH HOH . H 3 HOH A 21 141 32 HOH HOH . H 3 HOH A 22 142 142 HOH HOH . H 3 HOH A 23 143 33 HOH HOH . H 3 HOH A 24 144 34 HOH HOH . H 3 HOH A 25 145 35 HOH HOH . H 3 HOH A 26 146 36 HOH HOH . H 3 HOH A 27 149 39 HOH HOH . H 3 HOH A 28 150 40 HOH HOH . H 3 HOH A 29 151 151 HOH HOH . H 3 HOH A 30 152 152 HOH HOH . H 3 HOH A 31 153 153 HOH HOH . H 3 HOH A 32 154 154 HOH HOH . H 3 HOH A 33 158 158 HOH HOH . H 3 HOH A 34 159 159 HOH HOH . H 3 HOH A 35 160 160 HOH HOH . H 3 HOH A 36 161 161 HOH HOH . H 3 HOH A 37 163 163 HOH HOH . H 3 HOH A 38 164 164 HOH HOH . H 3 HOH A 39 165 165 HOH HOH . H 3 HOH A 40 166 166 HOH HOH . H 3 HOH A 41 167 167 HOH HOH . H 3 HOH A 42 172 50 HOH HOH . H 3 HOH A 43 173 51 HOH HOH . H 3 HOH A 44 174 52 HOH HOH . H 3 HOH A 45 178 56 HOH HOH . H 3 HOH A 46 179 57 HOH HOH . H 3 HOH A 47 181 59 HOH HOH . H 3 HOH A 48 182 60 HOH HOH . H 3 HOH A 49 183 61 HOH HOH . H 3 HOH A 50 184 62 HOH HOH . H 3 HOH A 51 185 63 HOH HOH . H 3 HOH A 52 186 64 HOH HOH . H 3 HOH A 53 187 65 HOH HOH . H 3 HOH A 54 188 66 HOH HOH . H 3 HOH A 55 189 67 HOH HOH . H 3 HOH A 56 190 68 HOH HOH . H 3 HOH A 57 195 73 HOH HOH . H 3 HOH A 58 196 74 HOH HOH . H 3 HOH A 59 202 81 HOH HOH . H 3 HOH A 60 203 84 HOH HOH . H 3 HOH A 61 204 85 HOH HOH . H 3 HOH A 62 209 90 HOH HOH . H 3 HOH A 63 215 96 HOH HOH . H 3 HOH A 64 216 97 HOH HOH . H 3 HOH A 65 217 98 HOH HOH . H 3 HOH A 66 218 99 HOH HOH . H 3 HOH A 67 219 100 HOH HOH . H 3 HOH A 68 220 101 HOH HOH . H 3 HOH A 69 222 103 HOH HOH . H 3 HOH A 70 223 104 HOH HOH . H 3 HOH A 71 224 105 HOH HOH . H 3 HOH A 72 225 107 HOH HOH . H 3 HOH A 73 226 108 HOH HOH . H 3 HOH A 74 227 109 HOH HOH . H 3 HOH A 75 228 110 HOH HOH . H 3 HOH A 76 229 111 HOH HOH . H 3 HOH A 77 230 112 HOH HOH . H 3 HOH A 78 231 113 HOH HOH . H 3 HOH A 79 232 114 HOH HOH . I 3 HOH E 1 118 118 HOH HOH . I 3 HOH E 2 119 6 HOH HOH . I 3 HOH E 3 120 120 HOH HOH . I 3 HOH E 4 121 121 HOH HOH . I 3 HOH E 5 122 122 HOH HOH . I 3 HOH E 6 123 123 HOH HOH . I 3 HOH E 7 124 124 HOH HOH . I 3 HOH E 8 125 125 HOH HOH . I 3 HOH E 9 126 126 HOH HOH . I 3 HOH E 10 127 127 HOH HOH . I 3 HOH E 11 128 128 HOH HOH . I 3 HOH E 12 129 129 HOH HOH . I 3 HOH E 13 130 130 HOH HOH . I 3 HOH E 14 131 131 HOH HOH . I 3 HOH E 15 132 22 HOH HOH . I 3 HOH E 16 133 23 HOH HOH . I 3 HOH E 17 134 25 HOH HOH . I 3 HOH E 18 135 11 HOH HOH . I 3 HOH E 19 136 136 HOH HOH . I 3 HOH E 20 137 137 HOH HOH . I 3 HOH E 21 138 30 HOH HOH . I 3 HOH E 22 139 139 HOH HOH . I 3 HOH E 23 140 12 HOH HOH . I 3 HOH E 24 141 141 HOH HOH . I 3 HOH E 25 142 13 HOH HOH . I 3 HOH E 26 143 143 HOH HOH . I 3 HOH E 27 144 144 HOH HOH . I 3 HOH E 28 145 145 HOH HOH . I 3 HOH E 29 146 146 HOH HOH . I 3 HOH E 30 147 37 HOH HOH . I 3 HOH E 31 148 38 HOH HOH . I 3 HOH E 32 149 149 HOH HOH . I 3 HOH E 33 150 150 HOH HOH . I 3 HOH E 34 151 19 HOH HOH . I 3 HOH E 35 152 115 HOH HOH . I 3 HOH E 36 153 116 HOH HOH . I 3 HOH E 37 154 117 HOH HOH . I 3 HOH E 38 155 42 HOH HOH . I 3 HOH E 39 156 43 HOH HOH . I 3 HOH E 40 157 44 HOH HOH . I 3 HOH E 41 158 132 HOH HOH . I 3 HOH E 42 159 134 HOH HOH . I 3 HOH E 43 160 138 HOH HOH . I 3 HOH E 44 161 147 HOH HOH . I 3 HOH E 45 162 45 HOH HOH . I 3 HOH E 46 163 148 HOH HOH . I 3 HOH E 47 164 155 HOH HOH . I 3 HOH E 48 165 156 HOH HOH . I 3 HOH E 49 166 157 HOH HOH . I 3 HOH E 50 167 162 HOH HOH . I 3 HOH E 51 168 46 HOH HOH . I 3 HOH E 52 169 47 HOH HOH . I 3 HOH E 53 170 48 HOH HOH . I 3 HOH E 54 171 49 HOH HOH . I 3 HOH E 55 175 53 HOH HOH . I 3 HOH E 56 176 54 HOH HOH . I 3 HOH E 57 177 55 HOH HOH . I 3 HOH E 58 180 58 HOH HOH . I 3 HOH E 59 191 69 HOH HOH . I 3 HOH E 60 192 70 HOH HOH . I 3 HOH E 61 193 71 HOH HOH . I 3 HOH E 62 194 72 HOH HOH . I 3 HOH E 63 197 75 HOH HOH . I 3 HOH E 64 198 76 HOH HOH . I 3 HOH E 65 199 77 HOH HOH . I 3 HOH E 66 200 78 HOH HOH . I 3 HOH E 67 201 79 HOH HOH . I 3 HOH E 68 205 86 HOH HOH . I 3 HOH E 69 206 87 HOH HOH . I 3 HOH E 70 207 88 HOH HOH . I 3 HOH E 71 208 89 HOH HOH . I 3 HOH E 72 210 91 HOH HOH . I 3 HOH E 73 211 92 HOH HOH . I 3 HOH E 74 212 93 HOH HOH . I 3 HOH E 75 213 94 HOH HOH . I 3 HOH E 76 214 95 HOH HOH . I 3 HOH E 77 221 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 -27.447 -18.01 6.672 1 72.72 ? C1 GOL 503 E 1 HETATM 2 O O1 GOL . . . F 2 -27.569 -17.968 8.08 1 72.5 ? O1 GOL 503 E 1 HETATM 3 C C2 GOL . . . F 2 -27.331 -16.598 6.098 1 72.82 ? C2 GOL 503 E 1 HETATM 4 O O2 GOL . . . F 2 -26.347 -16.599 5.081 1 72.53 ? O2 GOL 503 E 1 HETATM 5 C C3 GOL . . . F 2 -26.938 -15.596 7.186 1 72.24 ? C3 GOL 503 E 1 HETATM 6 O O3 GOL . . . F 2 -27.426 -14.303 6.895 1 70.98 ? O3 GOL 503 E 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #