data_3F5B # _model_server_result.job_id 7UnEIEjN1VbbIw1ugUivYA _model_server_result.datetime_utc '2025-03-12 20:05:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":185}' # _entry.id 3F5B # _exptl.entry_id 3F5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F5B _cell.length_a 77.504 _cell.length_b 77.504 _cell.length_c 73.178 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 13 1_555 A SG CYS 16 A CYS 13 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N MSE 5 A MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C GLN 19 A GLN 16 1_555 A N MSE 20 A MSE 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 A C MSE 20 A MSE 17 1_555 A N ASN 21 A ASN 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C GLN 114 A GLN 111 1_555 A N MSE 115 A MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale6 A C MSE 115 A MSE 112 1_555 A N ILE 116 A ILE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 A C LYS 167 A LYS 164 1_555 A N MSE 168 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale8 A C MSE 168 A MSE 165 1_555 A N LYS 169 A LYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 116 n n C O2 FMT sing 117 n n C H FMT sing 118 n n O2 HO2 FMT sing 119 n n # _atom_sites.entry_id 3F5B _atom_sites.fract_transf_matrix[1][1] 0.012903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 180 1 PO4 PO4 . C 3 ACT A 1 181 1 ACT ACT . D 4 CHX A 1 182 1 CHX CHX . E 5 FMT A 1 183 1 FMT FMT . F 5 FMT A 1 184 2 FMT FMT . G 5 FMT A 1 185 3 FMT FMT . H 5 FMT A 1 186 4 FMT FMT . I 6 EDO A 1 187 1 EDO EDO . J 7 HOH A 1 188 1 HOH HOH . J 7 HOH A 2 189 2 HOH HOH . J 7 HOH A 3 190 3 HOH HOH . J 7 HOH A 4 191 4 HOH HOH . J 7 HOH A 5 192 5 HOH HOH . J 7 HOH A 6 193 6 HOH HOH . J 7 HOH A 7 194 7 HOH HOH . J 7 HOH A 8 195 8 HOH HOH . J 7 HOH A 9 196 9 HOH HOH . J 7 HOH A 10 197 10 HOH HOH . J 7 HOH A 11 198 11 HOH HOH . J 7 HOH A 12 199 12 HOH HOH . J 7 HOH A 13 200 13 HOH HOH . J 7 HOH A 14 201 14 HOH HOH . J 7 HOH A 15 202 15 HOH HOH . J 7 HOH A 16 203 16 HOH HOH . J 7 HOH A 17 204 17 HOH HOH . J 7 HOH A 18 205 18 HOH HOH . J 7 HOH A 19 206 19 HOH HOH . J 7 HOH A 20 207 20 HOH HOH . J 7 HOH A 21 208 21 HOH HOH . J 7 HOH A 22 209 22 HOH HOH . J 7 HOH A 23 210 23 HOH HOH . J 7 HOH A 24 211 24 HOH HOH . J 7 HOH A 25 212 25 HOH HOH . J 7 HOH A 26 213 26 HOH HOH . J 7 HOH A 27 214 27 HOH HOH . J 7 HOH A 28 215 28 HOH HOH . J 7 HOH A 29 216 29 HOH HOH . J 7 HOH A 30 217 30 HOH HOH . J 7 HOH A 31 218 31 HOH HOH . J 7 HOH A 32 219 32 HOH HOH . J 7 HOH A 33 220 33 HOH HOH . J 7 HOH A 34 221 34 HOH HOH . J 7 HOH A 35 222 35 HOH HOH . J 7 HOH A 36 223 36 HOH HOH . J 7 HOH A 37 224 37 HOH HOH . J 7 HOH A 38 225 38 HOH HOH . J 7 HOH A 39 226 39 HOH HOH . J 7 HOH A 40 227 40 HOH HOH . J 7 HOH A 41 228 41 HOH HOH . J 7 HOH A 42 229 42 HOH HOH . J 7 HOH A 43 230 43 HOH HOH . J 7 HOH A 44 231 44 HOH HOH . J 7 HOH A 45 232 45 HOH HOH . J 7 HOH A 46 233 46 HOH HOH . J 7 HOH A 47 234 47 HOH HOH . J 7 HOH A 48 235 48 HOH HOH . J 7 HOH A 49 236 49 HOH HOH . J 7 HOH A 50 237 50 HOH HOH . J 7 HOH A 51 238 51 HOH HOH . J 7 HOH A 52 239 52 HOH HOH . J 7 HOH A 53 240 53 HOH HOH . J 7 HOH A 54 241 54 HOH HOH . J 7 HOH A 55 242 55 HOH HOH . J 7 HOH A 56 243 56 HOH HOH . J 7 HOH A 57 244 57 HOH HOH . J 7 HOH A 58 245 58 HOH HOH . J 7 HOH A 59 246 59 HOH HOH . J 7 HOH A 60 247 60 HOH HOH . J 7 HOH A 61 248 61 HOH HOH . J 7 HOH A 62 249 62 HOH HOH . J 7 HOH A 63 250 63 HOH HOH . J 7 HOH A 64 251 64 HOH HOH . J 7 HOH A 65 252 65 HOH HOH . J 7 HOH A 66 253 66 HOH HOH . J 7 HOH A 67 254 67 HOH HOH . J 7 HOH A 68 255 68 HOH HOH . J 7 HOH A 69 256 69 HOH HOH . J 7 HOH A 70 257 70 HOH HOH . J 7 HOH A 71 258 71 HOH HOH . J 7 HOH A 72 259 72 HOH HOH . J 7 HOH A 73 260 73 HOH HOH . J 7 HOH A 74 261 74 HOH HOH . J 7 HOH A 75 262 75 HOH HOH . J 7 HOH A 76 263 76 HOH HOH . J 7 HOH A 77 264 77 HOH HOH . J 7 HOH A 78 265 78 HOH HOH . J 7 HOH A 79 266 79 HOH HOH . J 7 HOH A 80 267 80 HOH HOH . J 7 HOH A 81 268 81 HOH HOH . J 7 HOH A 82 269 82 HOH HOH . J 7 HOH A 83 270 83 HOH HOH . J 7 HOH A 84 271 84 HOH HOH . J 7 HOH A 85 272 85 HOH HOH . J 7 HOH A 86 273 86 HOH HOH . J 7 HOH A 87 274 87 HOH HOH . J 7 HOH A 88 275 88 HOH HOH . J 7 HOH A 89 276 89 HOH HOH . J 7 HOH A 90 277 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . G 5 49.371 18.623 12.422 1 58.63 ? C FMT 185 A 1 HETATM 2 O O1 FMT . . . G 5 48.541 18.171 13.222 1 56.31 ? O1 FMT 185 A 1 HETATM 3 O O2 FMT . . . G 5 50.199 17.96 11.77 1 58.63 ? O2 FMT 185 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #