data_3F5G
#
_model_server_result.job_id            kZbBV0Sq3NLOCEQ0GC7jeQ 
_model_server_result.datetime_utc      '2024-11-28 19:21:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3f5g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    3F5G 
#
_exptl.entry_id    3F5G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3F5G 
_cell.length_a            46.807 
_cell.length_b            62.545 
_cell.length_c            88.396 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3F5G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O1A ADP . A ADP 1 1_555 C MG MG . A MG 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc2 A OD1 ASN 143 A ASN 144 1_555 C MG MG . A MG 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3F5G 
_atom_sites.fract_transf_matrix[1][1]    0.021364 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015988 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011313 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 1 1 ADP ADP . 
C 3 MG A 1 296 296 MG MG . 
D 4 HOH A 1 297 297 HOH HOH . 
D 4 HOH A 2 298 298 HOH HOH . 
D 4 HOH A 3 299 299 HOH HOH . 
D 4 HOH A 4 300 300 HOH HOH . 
D 4 HOH A 5 301 301 HOH HOH . 
D 4 HOH A 6 302 302 HOH HOH . 
D 4 HOH A 7 303 303 HOH HOH . 
D 4 HOH A 8 304 304 HOH HOH . 
D 4 HOH A 9 305 305 HOH HOH . 
D 4 HOH A 10 306 306 HOH HOH . 
D 4 HOH A 11 307 307 HOH HOH . 
D 4 HOH A 12 308 308 HOH HOH . 
D 4 HOH A 13 309 309 HOH HOH . 
D 4 HOH A 14 310 310 HOH HOH . 
D 4 HOH A 15 311 311 HOH HOH . 
D 4 HOH A 16 312 312 HOH HOH . 
D 4 HOH A 17 313 313 HOH HOH . 
D 4 HOH A 18 314 314 HOH HOH . 
D 4 HOH A 19 315 315 HOH HOH . 
D 4 HOH A 20 316 316 HOH HOH . 
D 4 HOH A 21 317 317 HOH HOH . 
D 4 HOH A 22 318 318 HOH HOH . 
D 4 HOH A 23 319 319 HOH HOH . 
D 4 HOH A 24 320 320 HOH HOH . 
D 4 HOH A 25 321 321 HOH HOH . 
D 4 HOH A 26 322 322 HOH HOH . 
D 4 HOH A 27 323 323 HOH HOH . 
D 4 HOH A 28 324 324 HOH HOH . 
D 4 HOH A 29 325 325 HOH HOH . 
D 4 HOH A 30 326 326 HOH HOH . 
D 4 HOH A 31 327 327 HOH HOH . 
D 4 HOH A 32 328 328 HOH HOH . 
D 4 HOH A 33 329 329 HOH HOH . 
D 4 HOH A 34 330 330 HOH HOH . 
D 4 HOH A 35 331 331 HOH HOH . 
D 4 HOH A 36 332 332 HOH HOH . 
D 4 HOH A 37 333 333 HOH HOH . 
D 4 HOH A 38 334 334 HOH HOH . 
D 4 HOH A 39 335 335 HOH HOH . 
D 4 HOH A 40 336 336 HOH HOH . 
D 4 HOH A 41 337 337 HOH HOH . 
D 4 HOH A 42 338 338 HOH HOH . 
D 4 HOH A 43 339 339 HOH HOH . 
D 4 HOH A 44 340 340 HOH HOH . 
D 4 HOH A 45 341 341 HOH HOH . 
D 4 HOH A 46 342 342 HOH HOH . 
D 4 HOH A 47 343 343 HOH HOH . 
D 4 HOH A 48 344 344 HOH HOH . 
D 4 HOH A 49 345 345 HOH HOH . 
D 4 HOH A 50 346 346 HOH HOH . 
D 4 HOH A 51 347 347 HOH HOH . 
D 4 HOH A 52 348 348 HOH HOH . 
D 4 HOH A 53 349 349 HOH HOH . 
D 4 HOH A 54 350 350 HOH HOH . 
D 4 HOH A 55 351 351 HOH HOH . 
D 4 HOH A 56 352 352 HOH HOH . 
D 4 HOH A 57 353 353 HOH HOH . 
D 4 HOH A 58 354 354 HOH HOH . 
D 4 HOH A 59 355 355 HOH HOH . 
D 4 HOH A 60 356 356 HOH HOH . 
D 4 HOH A 61 357 357 HOH HOH . 
D 4 HOH A 62 358 358 HOH HOH . 
D 4 HOH A 63 359 359 HOH HOH . 
D 4 HOH A 64 360 360 HOH HOH . 
D 4 HOH A 65 361 361 HOH HOH . 
D 4 HOH A 66 362 362 HOH HOH . 
D 4 HOH A 67 363 363 HOH HOH . 
D 4 HOH A 68 364 364 HOH HOH . 
D 4 HOH A 69 365 365 HOH HOH . 
D 4 HOH A 70 366 366 HOH HOH . 
D 4 HOH A 71 367 367 HOH HOH . 
D 4 HOH A 72 368 368 HOH HOH . 
D 4 HOH A 73 369 369 HOH HOH . 
D 4 HOH A 74 370 370 HOH HOH . 
D 4 HOH A 75 371 371 HOH HOH . 
D 4 HOH A 76 372 372 HOH HOH . 
D 4 HOH A 77 373 373 HOH HOH . 
D 4 HOH A 78 374 374 HOH HOH . 
D 4 HOH A 79 375 375 HOH HOH . 
D 4 HOH A 80 376 376 HOH HOH . 
D 4 HOH A 81 377 377 HOH HOH . 
D 4 HOH A 82 378 378 HOH HOH . 
D 4 HOH A 83 379 379 HOH HOH . 
D 4 HOH A 84 380 380 HOH HOH . 
D 4 HOH A 85 381 381 HOH HOH . 
D 4 HOH A 86 382 382 HOH HOH . 
D 4 HOH A 87 383 383 HOH HOH . 
D 4 HOH A 88 384 384 HOH HOH . 
D 4 HOH A 89 385 385 HOH HOH . 
D 4 HOH A 90 386 386 HOH HOH . 
D 4 HOH A 91 387 387 HOH HOH . 
D 4 HOH A 92 388 388 HOH HOH . 
D 4 HOH A 93 389 389 HOH HOH . 
D 4 HOH A 94 390 390 HOH HOH . 
D 4 HOH A 95 391 391 HOH HOH . 
D 4 HOH A 96 392 392 HOH HOH . 
D 4 HOH A 97 393 393 HOH HOH . 
D 4 HOH A 98 394 394 HOH HOH . 
D 4 HOH A 99 395 395 HOH HOH . 
D 4 HOH A 100 396 396 HOH HOH . 
D 4 HOH A 101 397 397 HOH HOH . 
D 4 HOH A 102 398 398 HOH HOH . 
D 4 HOH A 103 399 399 HOH HOH . 
D 4 HOH A 104 400 400 HOH HOH . 
D 4 HOH A 105 401 401 HOH HOH . 
D 4 HOH A 106 402 402 HOH HOH . 
D 4 HOH A 107 403 403 HOH HOH . 
D 4 HOH A 108 404 404 HOH HOH . 
D 4 HOH A 109 405 405 HOH HOH . 
D 4 HOH A 110 406 406 HOH HOH . 
D 4 HOH A 111 407 407 HOH HOH . 
D 4 HOH A 112 408 408 HOH HOH . 
D 4 HOH A 113 409 409 HOH HOH . 
D 4 HOH A 114 410 410 HOH HOH . 
D 4 HOH A 115 411 411 HOH HOH . 
D 4 HOH A 116 412 412 HOH HOH . 
D 4 HOH A 117 413 413 HOH HOH . 
D 4 HOH A 118 414 414 HOH HOH . 
D 4 HOH A 119 415 415 HOH HOH . 
D 4 HOH A 120 416 416 HOH HOH . 
D 4 HOH A 121 417 417 HOH HOH . 
D 4 HOH A 122 418 418 HOH HOH . 
D 4 HOH A 123 419 419 HOH HOH . 
D 4 HOH A 124 420 420 HOH HOH . 
D 4 HOH A 125 421 421 HOH HOH . 
D 4 HOH A 126 422 422 HOH HOH . 
D 4 HOH A 127 423 423 HOH HOH . 
D 4 HOH A 128 424 424 HOH HOH . 
D 4 HOH A 129 425 425 HOH HOH . 
D 4 HOH A 130 426 426 HOH HOH . 
D 4 HOH A 131 427 427 HOH HOH . 
D 4 HOH A 132 428 428 HOH HOH . 
D 4 HOH A 133 429 429 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 17.958 -1.588 10.983 1 46.51 ? PB ADP 1 A 1 
HETATM 2 O O1B ADP . . . B 2 17.198 -1.902 9.731 1 46.18 ? O1B ADP 1 A 1 
HETATM 3 O O2B ADP . . . B 2 18.536 -2.851 11.565 1 48.58 ? O2B ADP 1 A 1 
HETATM 4 O O3B ADP . . . B 2 17.267 -0.688 11.996 1 49.49 ? O3B ADP 1 A 1 
HETATM 5 P PA ADP . . . B 2 19.795 0.669 10.946 1 29.92 ? PA ADP 1 A 1 
HETATM 6 O O1A ADP . . . B 2 19.134 1.225 12.172 1 34.26 ? O1A ADP 1 A 1 
HETATM 7 O O2A ADP . . . B 2 19.928 1.621 9.767 1 25.23 ? O2A ADP 1 A 1 
HETATM 8 O O3A ADP . . . B 2 19.295 -0.783 10.495 1 38.24 ? O3A ADP 1 A 1 
HETATM 9 O O5' ADP . . . B 2 21.315 0.469 11.458 1 31.65 ? O5' ADP 1 A 1 
HETATM 10 C C5' ADP . . . B 2 21.612 -0.235 12.679 1 28.91 ? C5' ADP 1 A 1 
HETATM 11 C C4' ADP . . . B 2 22.581 0.503 13.583 1 29.49 ? C4' ADP 1 A 1 
HETATM 12 O O4' ADP . . . B 2 23.795 0.76 12.855 1 26.89 ? O4' ADP 1 A 1 
HETATM 13 C C3' ADP . . . B 2 22.127 1.882 14.05 1 30.87 ? C3' ADP 1 A 1 
HETATM 14 O O3' ADP . . . B 2 21.235 1.895 15.186 1 30.39 ? O3' ADP 1 A 1 
HETATM 15 C C2' ADP . . . B 2 23.439 2.615 14.272 1 30.32 ? C2' ADP 1 A 1 
HETATM 16 O O2' ADP . . . B 2 24.056 2.321 15.553 1 31.71 ? O2' ADP 1 A 1 
HETATM 17 C C1' ADP . . . B 2 24.333 2.05 13.17 1 25.5 ? C1' ADP 1 A 1 
HETATM 18 N N9 ADP . . . B 2 24.299 2.905 11.929 1 22.61 ? N9 ADP 1 A 1 
HETATM 19 C C8 ADP . . . B 2 23.347 2.879 10.974 1 22.72 ? C8 ADP 1 A 1 
HETATM 20 N N7 ADP . . . B 2 23.618 3.759 9.975 1 21.34 ? N7 ADP 1 A 1 
HETATM 21 C C5 ADP . . . B 2 24.754 4.358 10.308 1 20.28 ? C5 ADP 1 A 1 
HETATM 22 C C6 ADP . . . B 2 25.611 5.396 9.718 1 23.36 ? C6 ADP 1 A 1 
HETATM 23 N N6 ADP . . . B 2 25.289 5.984 8.525 1 22.58 ? N6 ADP 1 A 1 
HETATM 24 N N1 ADP . . . B 2 26.725 5.706 10.387 1 23.43 ? N1 ADP 1 A 1 
HETATM 25 C C2 ADP . . . B 2 27.094 5.163 11.557 1 24.31 ? C2 ADP 1 A 1 
HETATM 26 N N3 ADP . . . B 2 26.355 4.222 12.147 1 21.95 ? N3 ADP 1 A 1 
HETATM 27 C C4 ADP . . . B 2 25.2 3.798 11.591 1 21.09 ? C4 ADP 1 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#