data_3F5U
#
_model_server_result.job_id            Cvy5iqHNdsnBcnN3RczFcg 
_model_server_result.datetime_utc      '2024-11-16 02:45:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3f5u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":296}' 
#
_entry.id    3F5U 
#
_exptl.entry_id    3F5U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3F5U 
_cell.length_a            46.669 
_cell.length_b            62.461 
_cell.length_c            88.599 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3F5U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 161 A ASP 161 1_555 C MG MG . A MG 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc2 B O2G ANP . A ANP 296 1_555 C MG MG . A MG 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc3 B O3G ANP . A ANP 296 1_555 C MG MG . A MG 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc4 B O1A ANP . A ANP 296 1_555 C MG MG . A MG 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc5 C MG MG . A MG 297 1_555 E O HOH . A HOH 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     3F5U 
_atom_sites.fract_transf_matrix[1][1]    0.021428 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01601 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011287 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ANP A 1 296 296 ANP ANP . 
C 3 MG A 1 297 297 MG MG . 
D 4 SO4 A 1 298 298 SO4 SO4 . 
E 5 HOH A 1 299 299 HOH HOH . 
E 5 HOH A 2 300 300 HOH HOH . 
E 5 HOH A 3 301 301 HOH HOH . 
E 5 HOH A 4 302 302 HOH HOH . 
E 5 HOH A 5 303 303 HOH HOH . 
E 5 HOH A 6 304 304 HOH HOH . 
E 5 HOH A 7 305 305 HOH HOH . 
E 5 HOH A 8 306 306 HOH HOH . 
E 5 HOH A 9 307 307 HOH HOH . 
E 5 HOH A 10 308 308 HOH HOH . 
E 5 HOH A 11 309 309 HOH HOH . 
E 5 HOH A 12 310 310 HOH HOH . 
E 5 HOH A 13 311 311 HOH HOH . 
E 5 HOH A 14 312 312 HOH HOH . 
E 5 HOH A 15 313 313 HOH HOH . 
E 5 HOH A 16 314 314 HOH HOH . 
E 5 HOH A 17 315 315 HOH HOH . 
E 5 HOH A 18 316 316 HOH HOH . 
E 5 HOH A 19 317 317 HOH HOH . 
E 5 HOH A 20 318 318 HOH HOH . 
E 5 HOH A 21 319 319 HOH HOH . 
E 5 HOH A 22 320 320 HOH HOH . 
E 5 HOH A 23 321 321 HOH HOH . 
E 5 HOH A 24 322 322 HOH HOH . 
E 5 HOH A 25 323 323 HOH HOH . 
E 5 HOH A 26 324 324 HOH HOH . 
E 5 HOH A 27 325 325 HOH HOH . 
E 5 HOH A 28 326 326 HOH HOH . 
E 5 HOH A 29 327 327 HOH HOH . 
E 5 HOH A 30 328 328 HOH HOH . 
E 5 HOH A 31 329 329 HOH HOH . 
E 5 HOH A 32 330 330 HOH HOH . 
E 5 HOH A 33 331 331 HOH HOH . 
E 5 HOH A 34 332 332 HOH HOH . 
E 5 HOH A 35 333 333 HOH HOH . 
E 5 HOH A 36 334 334 HOH HOH . 
E 5 HOH A 37 335 335 HOH HOH . 
E 5 HOH A 38 336 336 HOH HOH . 
E 5 HOH A 39 337 337 HOH HOH . 
E 5 HOH A 40 338 338 HOH HOH . 
E 5 HOH A 41 339 339 HOH HOH . 
E 5 HOH A 42 340 340 HOH HOH . 
E 5 HOH A 43 341 341 HOH HOH . 
E 5 HOH A 44 342 342 HOH HOH . 
E 5 HOH A 45 343 343 HOH HOH . 
E 5 HOH A 46 344 344 HOH HOH . 
E 5 HOH A 47 345 345 HOH HOH . 
E 5 HOH A 48 346 346 HOH HOH . 
E 5 HOH A 49 347 347 HOH HOH . 
E 5 HOH A 50 348 348 HOH HOH . 
E 5 HOH A 51 349 349 HOH HOH . 
E 5 HOH A 52 350 350 HOH HOH . 
E 5 HOH A 53 351 351 HOH HOH . 
E 5 HOH A 54 352 352 HOH HOH . 
E 5 HOH A 55 353 353 HOH HOH . 
E 5 HOH A 56 354 354 HOH HOH . 
E 5 HOH A 57 355 355 HOH HOH . 
E 5 HOH A 58 356 356 HOH HOH . 
E 5 HOH A 59 357 357 HOH HOH . 
E 5 HOH A 60 358 358 HOH HOH . 
E 5 HOH A 61 359 359 HOH HOH . 
E 5 HOH A 62 360 360 HOH HOH . 
E 5 HOH A 63 361 361 HOH HOH . 
E 5 HOH A 64 362 362 HOH HOH . 
E 5 HOH A 65 363 363 HOH HOH . 
E 5 HOH A 66 364 364 HOH HOH . 
E 5 HOH A 67 365 365 HOH HOH . 
E 5 HOH A 68 366 366 HOH HOH . 
E 5 HOH A 69 367 367 HOH HOH . 
E 5 HOH A 70 368 368 HOH HOH . 
E 5 HOH A 71 369 369 HOH HOH . 
E 5 HOH A 72 370 370 HOH HOH . 
E 5 HOH A 73 371 371 HOH HOH . 
E 5 HOH A 74 372 372 HOH HOH . 
E 5 HOH A 75 373 373 HOH HOH . 
E 5 HOH A 76 374 374 HOH HOH . 
E 5 HOH A 77 375 375 HOH HOH . 
E 5 HOH A 78 376 376 HOH HOH . 
E 5 HOH A 79 377 377 HOH HOH . 
E 5 HOH A 80 378 378 HOH HOH . 
E 5 HOH A 81 379 379 HOH HOH . 
E 5 HOH A 82 380 380 HOH HOH . 
E 5 HOH A 83 381 381 HOH HOH . 
E 5 HOH A 84 382 382 HOH HOH . 
E 5 HOH A 85 383 383 HOH HOH . 
E 5 HOH A 86 385 385 HOH HOH . 
E 5 HOH A 87 386 386 HOH HOH . 
E 5 HOH A 88 387 387 HOH HOH . 
E 5 HOH A 89 388 388 HOH HOH . 
E 5 HOH A 90 389 389 HOH HOH . 
E 5 HOH A 91 390 390 HOH HOH . 
E 5 HOH A 92 391 391 HOH HOH . 
E 5 HOH A 93 392 392 HOH HOH . 
E 5 HOH A 94 393 393 HOH HOH . 
E 5 HOH A 95 394 394 HOH HOH . 
E 5 HOH A 96 395 395 HOH HOH . 
E 5 HOH A 97 396 396 HOH HOH . 
E 5 HOH A 98 397 397 HOH HOH . 
E 5 HOH A 99 398 398 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . B 2 16.304 -1.42 13.104 0.6 46.72 ? PG ANP 296 A 1 
HETATM 2 O O1G ANP . . . B 2 15.899 -2.887 13.209 1 44.65 ? O1G ANP 296 A 1 
HETATM 3 O O2G ANP . . . B 2 15.27 -0.393 13.557 0.6 43.14 ? O2G ANP 296 A 1 
HETATM 4 O O3G ANP . . . B 2 17.707 -1.211 13.639 0.6 43.64 ? O3G ANP 296 A 1 
HETATM 5 P PB ANP . . . B 2 17.756 -1.872 10.586 1 39.21 ? PB ANP 296 A 1 
HETATM 6 O O1B ANP . . . B 2 18.156 -3.197 11.138 1 40.11 ? O1B ANP 296 A 1 
HETATM 7 O O2B ANP . . . B 2 17.317 -1.99 9.127 1 42.55 ? O2B ANP 296 A 1 
HETATM 8 N N3B ANP . . . B 2 16.439 -1.133 11.402 1 41.68 ? N3B ANP 296 A 1 
HETATM 9 P PA ANP . . . B 2 19.619 0.555 10.925 1 28.5 ? PA ANP 296 A 1 
HETATM 10 O O1A ANP . . . B 2 19.163 1.239 12.157 1 32.3 ? O1A ANP 296 A 1 
HETATM 11 O O2A ANP . . . B 2 19.579 1.426 9.7 1 28.4 ? O2A ANP 296 A 1 
HETATM 12 O O3A ANP . . . B 2 19.149 -0.982 10.657 1 34.24 ? O3A ANP 296 A 1 
HETATM 13 O O5' ANP . . . B 2 21.174 0.268 11.265 1 28.6 ? O5' ANP 296 A 1 
HETATM 14 C C5' ANP . . . B 2 21.47 -0.403 12.5 1 28.41 ? C5' ANP 296 A 1 
HETATM 15 C C4' ANP . . . B 2 22.404 0.36 13.42 1 26.96 ? C4' ANP 296 A 1 
HETATM 16 O O4' ANP . . . B 2 23.596 0.624 12.699 1 25.41 ? O4' ANP 296 A 1 
HETATM 17 C C3' ANP . . . B 2 21.939 1.724 13.896 1 29.98 ? C3' ANP 296 A 1 
HETATM 18 O O3' ANP . . . B 2 21.176 1.684 15.113 1 31.55 ? O3' ANP 296 A 1 
HETATM 19 C C2' ANP . . . B 2 23.249 2.469 14.103 1 27.87 ? C2' ANP 296 A 1 
HETATM 20 O O2' ANP . . . B 2 23.838 2.072 15.373 1 30.71 ? O2' ANP 296 A 1 
HETATM 21 C C1' ANP . . . B 2 24.134 1.927 12.986 1 23.78 ? C1' ANP 296 A 1 
HETATM 22 N N9 ANP . . . B 2 24.078 2.784 11.78 1 23 ? N9 ANP 296 A 1 
HETATM 23 C C8 ANP . . . B 2 23.106 2.762 10.814 1 21.73 ? C8 ANP 296 A 1 
HETATM 24 N N7 ANP . . . B 2 23.349 3.646 9.811 1 20.92 ? N7 ANP 296 A 1 
HETATM 25 C C5 ANP . . . B 2 24.476 4.287 10.17 1 19.75 ? C5 ANP 296 A 1 
HETATM 26 C C6 ANP . . . B 2 25.305 5.341 9.583 1 24.73 ? C6 ANP 296 A 1 
HETATM 27 N N6 ANP . . . B 2 24.956 5.941 8.409 1 22.37 ? N6 ANP 296 A 1 
HETATM 28 N N1 ANP . . . B 2 26.439 5.689 10.243 1 22.89 ? N1 ANP 296 A 1 
HETATM 29 C C2 ANP . . . B 2 26.801 5.14 11.417 1 23.69 ? C2 ANP 296 A 1 
HETATM 30 N N3 ANP . . . B 2 26.112 4.141 11.993 1 22.51 ? N3 ANP 296 A 1 
HETATM 31 C C4 ANP . . . B 2 24.944 3.725 11.45 1 20.98 ? C4 ANP 296 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#