data_3F5X # _model_server_result.job_id iNLdp2DbsRzzGhur5jclDg _model_server_result.datetime_utc '2025-01-11 07:08:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":299}' # _entry.id 3F5X # _exptl.entry_id 3F5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F5X _cell.length_a 184.051 _cell.length_b 184.051 _cell.length_c 214.848 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,G,H,I,L,M 1 1,2 A,B,E,F,J,K 1 3,4 C,D,G,H,I,L,M 2 1 A,B,E,F,J,K 2 4 A,B,E,F,J,K 3 1 C,D,G,H,I,L,M 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_544 x,x-y-1,-z-2/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 92.0255 -159.392842 -143.232 3 'crystal symmetry operation' 6_544 x-y,x-1,z-2/3 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 92.0255 -159.392842 -143.232 4 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 191 n n C1 C2 GOL sing 192 n n C1 H11 GOL sing 193 n n C1 H12 GOL sing 194 n n O1 HO1 GOL sing 195 n n C2 O2 GOL sing 196 n n C2 C3 GOL sing 197 n n C2 H2 GOL sing 198 n n O2 HO2 GOL sing 199 n n C3 O3 GOL sing 200 n n C3 H31 GOL sing 201 n n C3 H32 GOL sing 202 n n O3 HO3 GOL sing 203 n n # _atom_sites.entry_id 3F5X _atom_sites.fract_transf_matrix[1][1] 0.005433 _atom_sites.fract_transf_matrix[1][2] 0.003137 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 299 1 GOL GOL . F 4 EZV A 1 300 1 EZV EZV . G 3 GOL C 1 299 2 GOL GOL . H 4 EZV C 1 300 2 EZV EZV . I 5 SO4 D 1 1 1 SO4 SO4 . J 6 HOH A 1 301 9 HOH HOH . J 6 HOH A 2 302 10 HOH HOH . J 6 HOH A 3 303 11 HOH HOH . J 6 HOH A 4 304 14 HOH HOH . J 6 HOH A 5 305 15 HOH HOH . J 6 HOH A 6 306 17 HOH HOH . J 6 HOH A 7 307 18 HOH HOH . J 6 HOH A 8 308 19 HOH HOH . J 6 HOH A 9 309 20 HOH HOH . J 6 HOH A 10 310 21 HOH HOH . J 6 HOH A 11 311 22 HOH HOH . J 6 HOH A 12 312 23 HOH HOH . J 6 HOH A 13 313 24 HOH HOH . J 6 HOH A 14 314 25 HOH HOH . J 6 HOH A 15 315 26 HOH HOH . J 6 HOH A 16 316 27 HOH HOH . J 6 HOH A 17 317 28 HOH HOH . J 6 HOH A 18 318 29 HOH HOH . J 6 HOH A 19 319 30 HOH HOH . J 6 HOH A 20 320 31 HOH HOH . J 6 HOH A 21 321 32 HOH HOH . J 6 HOH A 22 322 33 HOH HOH . J 6 HOH A 23 323 34 HOH HOH . J 6 HOH A 24 324 38 HOH HOH . J 6 HOH A 25 325 39 HOH HOH . J 6 HOH A 26 326 40 HOH HOH . J 6 HOH A 27 327 41 HOH HOH . J 6 HOH A 28 328 42 HOH HOH . J 6 HOH A 29 329 43 HOH HOH . J 6 HOH A 30 330 44 HOH HOH . J 6 HOH A 31 331 45 HOH HOH . J 6 HOH A 32 332 46 HOH HOH . J 6 HOH A 33 333 47 HOH HOH . J 6 HOH A 34 334 48 HOH HOH . J 6 HOH A 35 335 49 HOH HOH . J 6 HOH A 36 336 50 HOH HOH . J 6 HOH A 37 337 51 HOH HOH . J 6 HOH A 38 338 52 HOH HOH . J 6 HOH A 39 339 53 HOH HOH . J 6 HOH A 40 340 54 HOH HOH . J 6 HOH A 41 341 55 HOH HOH . K 6 HOH B 1 35 35 HOH HOH . K 6 HOH B 2 36 36 HOH HOH . K 6 HOH B 3 37 37 HOH HOH . K 6 HOH B 4 56 56 HOH HOH . K 6 HOH B 5 57 57 HOH HOH . K 6 HOH B 6 58 58 HOH HOH . K 6 HOH B 7 59 59 HOH HOH . K 6 HOH B 8 60 60 HOH HOH . K 6 HOH B 9 61 61 HOH HOH . K 6 HOH B 10 62 62 HOH HOH . L 6 HOH C 1 301 12 HOH HOH . L 6 HOH C 2 302 13 HOH HOH . L 6 HOH C 3 303 16 HOH HOH . M 6 HOH D 1 2 2 HOH HOH . M 6 HOH D 2 3 3 HOH HOH . M 6 HOH D 3 4 4 HOH HOH . M 6 HOH D 4 5 5 HOH HOH . M 6 HOH D 5 6 6 HOH HOH . M 6 HOH D 6 7 7 HOH HOH . M 6 HOH D 7 8 8 HOH HOH . M 6 HOH D 8 63 63 HOH HOH . M 6 HOH D 9 64 64 HOH HOH . M 6 HOH D 10 65 65 HOH HOH . M 6 HOH D 11 66 66 HOH HOH . M 6 HOH D 12 67 67 HOH HOH . M 6 HOH D 13 68 68 HOH HOH . M 6 HOH D 14 433 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 -8.398 -61.388 -45.242 1 66.48 ? C1 GOL 299 C 1 HETATM 2 O O1 GOL . . . G 3 -7.98 -60.054 -45.042 1 66.45 ? O1 GOL 299 C 1 HETATM 3 C C2 GOL . . . G 3 -9.369 -61.81 -44.149 1 66.48 ? C2 GOL 299 C 1 HETATM 4 O O2 GOL . . . G 3 -9.765 -63.148 -44.374 1 66.59 ? O2 GOL 299 C 1 HETATM 5 C C3 GOL . . . G 3 -10.6 -60.905 -44.127 1 66.26 ? C3 GOL 299 C 1 HETATM 6 O O3 GOL . . . G 3 -10.26 -59.584 -43.778 1 65.64 ? O3 GOL 299 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #