data_3F5X # _model_server_result.job_id 4ItNttNshgRYoHI5-I-eug _model_server_result.datetime_utc '2025-01-11 06:58:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":300}' # _entry.id 3F5X # _exptl.entry_id 3F5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 423.513 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{3-[7-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-indazol-6-yl}aniline _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F5X _cell.length_a 184.051 _cell.length_b 184.051 _cell.length_c 214.848 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,G,H,I,L,M 1 1,2 A,B,E,F,J,K 1 3,4 C,D,G,H,I,L,M 2 1 A,B,E,F,J,K 2 4 A,B,E,F,J,K 3 1 C,D,G,H,I,L,M 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_544 x,x-y-1,-z-2/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 92.0255 -159.392842 -143.232 3 'crystal symmetry operation' 6_544 x-y,x-1,z-2/3 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 92.0255 -159.392842 -143.232 4 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _chem_comp.formula 'C25 H25 N7' _chem_comp.formula_weight 423.513 _chem_comp.id EZV _chem_comp.mon_nstd_flag . _chem_comp.name 4-{3-[7-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-indazol-6-yl}aniline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EZV doub 83 n y C1 C6 EZV sing 84 n y C2 C3 EZV sing 85 n y C2 C19 EZV sing 86 n y C3 C4 EZV doub 87 n y C4 C5 EZV sing 88 n y C4 N7 EZV sing 89 n y C5 C6 EZV doub 90 n y C5 C9 EZV sing 91 n y N7 N8 EZV sing 92 n y N8 C9 EZV doub 93 n y C9 C10 EZV sing 94 n y C10 N11 EZV doub 95 n y C10 N14 EZV sing 96 n y N11 C12 EZV sing 97 n y C12 C13 EZV doub 98 n y C12 C15 EZV sing 99 n y C13 N14 EZV sing 100 n y C13 C18 EZV sing 101 n y C15 C16 EZV doub 102 n y C16 C17 EZV sing 103 n y C17 C18 EZV doub 104 n y C18 N20 EZV sing 105 n n C19 C27 EZV doub 106 n y C19 C31 EZV sing 107 n y N20 C21 EZV sing 108 n n N20 C25 EZV sing 109 n n C21 C22 EZV sing 110 n n C22 N23 EZV sing 111 n n N23 C24 EZV sing 112 n n N23 C26 EZV sing 113 n n C24 C25 EZV sing 114 n n C27 C28 EZV sing 115 n y C28 C29 EZV doub 116 n y C29 C30 EZV sing 117 n y C29 N32 EZV sing 118 n n C30 C31 EZV doub 119 n y C1 H1 EZV sing 120 n n C3 H3 EZV sing 121 n n C6 H6 EZV sing 122 n n N7 HN7 EZV sing 123 n n N14 HN14 EZV sing 124 n n C15 H15 EZV sing 125 n n C16 H16 EZV sing 126 n n C17 H17 EZV sing 127 n n C21 H21 EZV sing 128 n n C21 H21A EZV sing 129 n n C22 H22 EZV sing 130 n n C22 H22A EZV sing 131 n n C24 H24 EZV sing 132 n n C24 H24A EZV sing 133 n n C25 H25 EZV sing 134 n n C25 H25A EZV sing 135 n n C26 H26 EZV sing 136 n n C26 H26A EZV sing 137 n n C26 H26B EZV sing 138 n n C27 H27 EZV sing 139 n n C28 H28 EZV sing 140 n n C30 H30 EZV sing 141 n n C31 H31 EZV sing 142 n n N32 HN32 EZV sing 143 n n N32 HN3A EZV sing 144 n n # _atom_sites.entry_id 3F5X _atom_sites.fract_transf_matrix[1][1] 0.005433 _atom_sites.fract_transf_matrix[1][2] 0.003137 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 299 1 GOL GOL . F 4 EZV A 1 300 1 EZV EZV . G 3 GOL C 1 299 2 GOL GOL . H 4 EZV C 1 300 2 EZV EZV . I 5 SO4 D 1 1 1 SO4 SO4 . J 6 HOH A 1 301 9 HOH HOH . J 6 HOH A 2 302 10 HOH HOH . J 6 HOH A 3 303 11 HOH HOH . J 6 HOH A 4 304 14 HOH HOH . J 6 HOH A 5 305 15 HOH HOH . J 6 HOH A 6 306 17 HOH HOH . J 6 HOH A 7 307 18 HOH HOH . J 6 HOH A 8 308 19 HOH HOH . J 6 HOH A 9 309 20 HOH HOH . J 6 HOH A 10 310 21 HOH HOH . J 6 HOH A 11 311 22 HOH HOH . J 6 HOH A 12 312 23 HOH HOH . J 6 HOH A 13 313 24 HOH HOH . J 6 HOH A 14 314 25 HOH HOH . J 6 HOH A 15 315 26 HOH HOH . J 6 HOH A 16 316 27 HOH HOH . J 6 HOH A 17 317 28 HOH HOH . J 6 HOH A 18 318 29 HOH HOH . J 6 HOH A 19 319 30 HOH HOH . J 6 HOH A 20 320 31 HOH HOH . J 6 HOH A 21 321 32 HOH HOH . J 6 HOH A 22 322 33 HOH HOH . J 6 HOH A 23 323 34 HOH HOH . J 6 HOH A 24 324 38 HOH HOH . J 6 HOH A 25 325 39 HOH HOH . J 6 HOH A 26 326 40 HOH HOH . J 6 HOH A 27 327 41 HOH HOH . J 6 HOH A 28 328 42 HOH HOH . J 6 HOH A 29 329 43 HOH HOH . J 6 HOH A 30 330 44 HOH HOH . J 6 HOH A 31 331 45 HOH HOH . J 6 HOH A 32 332 46 HOH HOH . J 6 HOH A 33 333 47 HOH HOH . J 6 HOH A 34 334 48 HOH HOH . J 6 HOH A 35 335 49 HOH HOH . J 6 HOH A 36 336 50 HOH HOH . J 6 HOH A 37 337 51 HOH HOH . J 6 HOH A 38 338 52 HOH HOH . J 6 HOH A 39 339 53 HOH HOH . J 6 HOH A 40 340 54 HOH HOH . J 6 HOH A 41 341 55 HOH HOH . K 6 HOH B 1 35 35 HOH HOH . K 6 HOH B 2 36 36 HOH HOH . K 6 HOH B 3 37 37 HOH HOH . K 6 HOH B 4 56 56 HOH HOH . K 6 HOH B 5 57 57 HOH HOH . K 6 HOH B 6 58 58 HOH HOH . K 6 HOH B 7 59 59 HOH HOH . K 6 HOH B 8 60 60 HOH HOH . K 6 HOH B 9 61 61 HOH HOH . K 6 HOH B 10 62 62 HOH HOH . L 6 HOH C 1 301 12 HOH HOH . L 6 HOH C 2 302 13 HOH HOH . L 6 HOH C 3 303 16 HOH HOH . M 6 HOH D 1 2 2 HOH HOH . M 6 HOH D 2 3 3 HOH HOH . M 6 HOH D 3 4 4 HOH HOH . M 6 HOH D 4 5 5 HOH HOH . M 6 HOH D 5 6 6 HOH HOH . M 6 HOH D 6 7 7 HOH HOH . M 6 HOH D 7 8 8 HOH HOH . M 6 HOH D 8 63 63 HOH HOH . M 6 HOH D 9 64 64 HOH HOH . M 6 HOH D 10 65 65 HOH HOH . M 6 HOH D 11 66 66 HOH HOH . M 6 HOH D 12 67 67 HOH HOH . M 6 HOH D 13 68 68 HOH HOH . M 6 HOH D 14 433 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EZV . . . F 4 0.117 90.258 30.106 1 47.12 ? C1 EZV 300 A 1 HETATM 2 C C2 EZV . . . F 4 0.631 89.451 31.1 1 48.16 ? C2 EZV 300 A 1 HETATM 3 C C3 EZV . . . F 4 0.768 89.914 32.394 1 47.21 ? C3 EZV 300 A 1 HETATM 4 C C4 EZV . . . F 4 0.382 91.218 32.593 1 46.62 ? C4 EZV 300 A 1 HETATM 5 C C5 EZV . . . F 4 -0.129 92.036 31.608 1 47.77 ? C5 EZV 300 A 1 HETATM 6 C C6 EZV . . . F 4 -0.29 91.554 30.318 1 47.67 ? C6 EZV 300 A 1 HETATM 7 N N7 EZV . . . F 4 0.381 91.979 33.722 1 46.19 ? N7 EZV 300 A 1 HETATM 8 N N8 EZV . . . F 4 -0.051 93.236 33.555 1 46.56 ? N8 EZV 300 A 1 HETATM 9 C C9 EZV . . . F 4 -0.373 93.27 32.262 1 47.84 ? C9 EZV 300 A 1 HETATM 10 C C10 EZV . . . F 4 -0.817 94.512 31.605 1 49.2 ? C10 EZV 300 A 1 HETATM 11 N N11 EZV . . . F 4 -1.145 95.668 32.249 1 49.03 ? N11 EZV 300 A 1 HETATM 12 C C12 EZV . . . F 4 -1.447 96.607 31.307 1 49.46 ? C12 EZV 300 A 1 HETATM 13 C C13 EZV . . . F 4 -1.287 95.959 30.098 1 49.89 ? C13 EZV 300 A 1 HETATM 14 N N14 EZV . . . F 4 -0.886 94.663 30.303 1 49.25 ? N14 EZV 300 A 1 HETATM 15 C C15 EZV . . . F 4 -1.841 97.92 31.435 1 49.06 ? C15 EZV 300 A 1 HETATM 16 C C16 EZV . . . F 4 -2.061 98.562 30.238 1 49.36 ? C16 EZV 300 A 1 HETATM 17 C C17 EZV . . . F 4 -1.899 97.937 29.021 1 49.36 ? C17 EZV 300 A 1 HETATM 18 C C18 EZV . . . F 4 -1.506 96.619 28.896 1 49.56 ? C18 EZV 300 A 1 HETATM 19 C C19 EZV . . . F 4 1.122 88.141 30.749 1 49.34 ? C19 EZV 300 A 1 HETATM 20 N N20 EZV . . . F 4 -1.338 95.983 27.648 1 49.78 ? N20 EZV 300 A 1 HETATM 21 C C21 EZV . . . F 4 0.057 95.626 27.453 1 50.43 ? C21 EZV 300 A 1 HETATM 22 C C22 EZV . . . F 4 0.126 94.639 26.306 1 50.41 ? C22 EZV 300 A 1 HETATM 23 N N23 EZV . . . F 4 -0.484 95.301 25.116 1 50.89 ? N23 EZV 300 A 1 HETATM 24 C C24 EZV . . . F 4 -1.851 95.858 25.319 1 50.67 ? C24 EZV 300 A 1 HETATM 25 C C25 EZV . . . F 4 -1.849 96.762 26.532 1 50.59 ? C25 EZV 300 A 1 HETATM 26 C C26 EZV . . . F 4 -0.447 94.41 23.935 1 51.31 ? C26 EZV 300 A 1 HETATM 27 C C27 EZV . . . F 4 0.502 87.327 29.825 1 50.43 ? C27 EZV 300 A 1 HETATM 28 C C28 EZV . . . F 4 1.064 86.11 29.506 1 49.36 ? C28 EZV 300 A 1 HETATM 29 C C29 EZV . . . F 4 2.236 85.677 30.092 1 49.1 ? C29 EZV 300 A 1 HETATM 30 C C30 EZV . . . F 4 2.861 86.483 31.014 1 49.46 ? C30 EZV 300 A 1 HETATM 31 C C31 EZV . . . F 4 2.303 87.704 31.322 1 50.53 ? C31 EZV 300 A 1 HETATM 32 N N32 EZV . . . F 4 2.78 84.434 29.759 1 46.89 ? N32 EZV 300 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #