data_3F64 # _model_server_result.job_id hk0iIX0IJxU4LMgx_WEsgg _model_server_result.datetime_utc '2025-07-19 06:42:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":178}' # _entry.id 3F64 # _exptl.entry_id 3F64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.301 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F64 _cell.length_a 43.025 _cell.length_b 43.025 _cell.length_c 288.45 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 53 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 53 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 110 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 110 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.043 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H18 N2 O8' _chem_comp.formula_weight 342.301 _chem_comp.id LEC _chem_comp.mon_nstd_flag n _chem_comp.name '4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'N-[(2S,3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(4-nitrophenoxy)oxan-3-yl]ethanamide;4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucoside;4-nitrophenyl 2-acetamido-2-deoxy-D-glucoside;4-nitrophenyl 2-acetamido-2-deoxy-glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 LEC sing 173 n n C7 O7 LEC doub 174 n n C7 N2 LEC sing 175 n n N2 C2 LEC sing 176 n n C2 C3 LEC sing 177 n n C2 C1 LEC sing 178 n n C3 O3 LEC sing 179 n n C3 C4 LEC sing 180 n n C4 O4 LEC sing 181 n n C4 C5 LEC sing 182 n n C5 C6 LEC sing 183 n n C5 O5 LEC sing 184 n n C6 O6 LEC sing 185 n n O5 C1 LEC sing 186 n n C1 O1 LEC sing 187 n n O1 C1' LEC sing 188 n n C1' C2' LEC doub 189 n y C1' C6' LEC sing 190 n y C2' C3' LEC sing 191 n y C3' C4' LEC doub 192 n y C4' N1' LEC sing 193 n n C4' C5' LEC sing 194 n y N1' O2' LEC sing 195 n n N1' O1' LEC doub 196 n n C5' C6' LEC doub 197 n y C8 H81 LEC sing 198 n n C8 H82 LEC sing 199 n n C8 H83 LEC sing 200 n n N2 HN2 LEC sing 201 n n C2 H2 LEC sing 202 n n C3 H3 LEC sing 203 n n O3 HO3 LEC sing 204 n n C4 H4 LEC sing 205 n n O4 HO4 LEC sing 206 n n C5 H5 LEC sing 207 n n C6 H61 LEC sing 208 n n C6 H62 LEC sing 209 n n O6 HO6 LEC sing 210 n n C1 H1 LEC sing 211 n n C2' H2' LEC sing 212 n n C3' H3' LEC sing 213 n n C5' H5' LEC sing 214 n n C6' H6' LEC sing 215 n n # _atom_sites.entry_id 3F64 _atom_sites.fract_transf_matrix[1][1] 0.023242 _atom_sites.fract_transf_matrix[1][2] 0.013419 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LEC A 1 178 1 LEC LIG . C 3 HOH A 1 179 179 HOH HOH . C 3 HOH A 2 180 180 HOH HOH . C 3 HOH A 3 181 181 HOH HOH . C 3 HOH A 4 182 182 HOH HOH . C 3 HOH A 5 183 183 HOH HOH . C 3 HOH A 6 184 184 HOH HOH . C 3 HOH A 7 185 185 HOH HOH . C 3 HOH A 8 186 186 HOH HOH . C 3 HOH A 9 187 187 HOH HOH . C 3 HOH A 10 188 188 HOH HOH . C 3 HOH A 11 189 189 HOH HOH . C 3 HOH A 12 190 190 HOH HOH . C 3 HOH A 13 191 191 HOH HOH . C 3 HOH A 14 192 192 HOH HOH . C 3 HOH A 15 193 1 HOH HOH . C 3 HOH A 16 194 194 HOH HOH . C 3 HOH A 17 195 195 HOH HOH . C 3 HOH A 18 196 196 HOH HOH . C 3 HOH A 19 197 197 HOH HOH . C 3 HOH A 20 198 2 HOH HOH . C 3 HOH A 21 199 3 HOH HOH . C 3 HOH A 22 200 200 HOH HOH . C 3 HOH A 23 201 201 HOH HOH . C 3 HOH A 24 202 202 HOH HOH . C 3 HOH A 25 203 4 HOH HOH . C 3 HOH A 26 204 204 HOH HOH . C 3 HOH A 27 205 205 HOH HOH . C 3 HOH A 28 206 206 HOH HOH . C 3 HOH A 29 207 207 HOH HOH . C 3 HOH A 30 208 5 HOH HOH . C 3 HOH A 31 209 6 HOH HOH . C 3 HOH A 32 210 7 HOH HOH . C 3 HOH A 33 211 8 HOH HOH . C 3 HOH A 34 212 9 HOH HOH . C 3 HOH A 35 213 10 HOH HOH . C 3 HOH A 36 214 11 HOH HOH . C 3 HOH A 37 215 12 HOH HOH . C 3 HOH A 38 216 13 HOH HOH . C 3 HOH A 39 217 14 HOH HOH . C 3 HOH A 40 218 15 HOH HOH . C 3 HOH A 41 219 16 HOH HOH . C 3 HOH A 42 220 17 HOH HOH . C 3 HOH A 43 221 18 HOH HOH . C 3 HOH A 44 222 19 HOH HOH . C 3 HOH A 45 223 20 HOH HOH . C 3 HOH A 46 224 21 HOH HOH . C 3 HOH A 47 225 22 HOH HOH . C 3 HOH A 48 226 23 HOH HOH . C 3 HOH A 49 227 24 HOH HOH . C 3 HOH A 50 228 25 HOH HOH . C 3 HOH A 51 229 26 HOH HOH . C 3 HOH A 52 230 27 HOH HOH . C 3 HOH A 53 231 28 HOH HOH . C 3 HOH A 54 232 29 HOH HOH . C 3 HOH A 55 233 30 HOH HOH . C 3 HOH A 56 234 32 HOH HOH . C 3 HOH A 57 235 33 HOH HOH . C 3 HOH A 58 236 34 HOH HOH . C 3 HOH A 59 237 35 HOH HOH . C 3 HOH A 60 238 36 HOH HOH . C 3 HOH A 61 239 37 HOH HOH . C 3 HOH A 62 240 38 HOH HOH . C 3 HOH A 63 241 39 HOH HOH . C 3 HOH A 64 242 40 HOH HOH . C 3 HOH A 65 243 41 HOH HOH . C 3 HOH A 66 244 42 HOH HOH . C 3 HOH A 67 245 43 HOH HOH . C 3 HOH A 68 246 44 HOH HOH . C 3 HOH A 69 247 45 HOH HOH . C 3 HOH A 70 248 46 HOH HOH . C 3 HOH A 71 249 47 HOH HOH . C 3 HOH A 72 250 48 HOH HOH . C 3 HOH A 73 251 49 HOH HOH . C 3 HOH A 74 252 50 HOH HOH . C 3 HOH A 75 253 51 HOH HOH . C 3 HOH A 76 254 52 HOH HOH . C 3 HOH A 77 255 54 HOH HOH . C 3 HOH A 78 256 55 HOH HOH . C 3 HOH A 79 257 56 HOH HOH . C 3 HOH A 80 258 57 HOH HOH . C 3 HOH A 81 259 58 HOH HOH . C 3 HOH A 82 260 59 HOH HOH . C 3 HOH A 83 261 60 HOH HOH . C 3 HOH A 84 262 61 HOH HOH . C 3 HOH A 85 263 62 HOH HOH . C 3 HOH A 86 264 63 HOH HOH . C 3 HOH A 87 265 64 HOH HOH . C 3 HOH A 88 266 65 HOH HOH . C 3 HOH A 89 267 66 HOH HOH . C 3 HOH A 90 268 67 HOH HOH . C 3 HOH A 91 269 68 HOH HOH . C 3 HOH A 92 270 69 HOH HOH . C 3 HOH A 93 271 70 HOH HOH . C 3 HOH A 94 272 71 HOH HOH . C 3 HOH A 95 273 72 HOH HOH . C 3 HOH A 96 274 73 HOH HOH . C 3 HOH A 97 275 74 HOH HOH . C 3 HOH A 98 276 75 HOH HOH . C 3 HOH A 99 277 76 HOH HOH . C 3 HOH A 100 278 77 HOH HOH . C 3 HOH A 101 279 78 HOH HOH . C 3 HOH A 102 280 79 HOH HOH . C 3 HOH A 103 281 80 HOH HOH . C 3 HOH A 104 282 82 HOH HOH . C 3 HOH A 105 283 83 HOH HOH . C 3 HOH A 106 284 84 HOH HOH . C 3 HOH A 107 285 86 HOH HOH . C 3 HOH A 108 286 87 HOH HOH . C 3 HOH A 109 287 88 HOH HOH . C 3 HOH A 110 288 90 HOH HOH . C 3 HOH A 111 289 91 HOH HOH . C 3 HOH A 112 290 92 HOH HOH . C 3 HOH A 113 291 93 HOH HOH . C 3 HOH A 114 292 94 HOH HOH . C 3 HOH A 115 293 95 HOH HOH . C 3 HOH A 116 294 101 HOH HOH . C 3 HOH A 117 295 102 HOH HOH . C 3 HOH A 118 296 103 HOH HOH . C 3 HOH A 119 297 105 HOH HOH . C 3 HOH A 120 298 106 HOH HOH . C 3 HOH A 121 299 107 HOH HOH . C 3 HOH A 122 300 108 HOH HOH . C 3 HOH A 123 301 109 HOH HOH . C 3 HOH A 124 302 110 HOH HOH . C 3 HOH A 125 303 111 HOH HOH . C 3 HOH A 126 304 113 HOH HOH . C 3 HOH A 127 305 114 HOH HOH . C 3 HOH A 128 306 115 HOH HOH . C 3 HOH A 129 307 116 HOH HOH . C 3 HOH A 130 308 117 HOH HOH . C 3 HOH A 131 309 118 HOH HOH . C 3 HOH A 132 310 119 HOH HOH . C 3 HOH A 133 311 120 HOH HOH . C 3 HOH A 134 312 121 HOH HOH . C 3 HOH A 135 313 122 HOH HOH . C 3 HOH A 136 314 123 HOH HOH . C 3 HOH A 137 315 124 HOH HOH . C 3 HOH A 138 316 126 HOH HOH . C 3 HOH A 139 317 128 HOH HOH . C 3 HOH A 140 318 129 HOH HOH . C 3 HOH A 141 319 130 HOH HOH . C 3 HOH A 142 320 131 HOH HOH . C 3 HOH A 143 321 132 HOH HOH . C 3 HOH A 144 322 134 HOH HOH . C 3 HOH A 145 323 136 HOH HOH . C 3 HOH A 146 324 138 HOH HOH . C 3 HOH A 147 325 139 HOH HOH . C 3 HOH A 148 326 140 HOH HOH . C 3 HOH A 149 327 141 HOH HOH . C 3 HOH A 150 328 142 HOH HOH . C 3 HOH A 151 329 143 HOH HOH . C 3 HOH A 152 330 144 HOH HOH . C 3 HOH A 153 331 145 HOH HOH . C 3 HOH A 154 332 146 HOH HOH . C 3 HOH A 155 333 147 HOH HOH . C 3 HOH A 156 334 148 HOH HOH . C 3 HOH A 157 335 149 HOH HOH . C 3 HOH A 158 336 151 HOH HOH . C 3 HOH A 159 337 152 HOH HOH . C 3 HOH A 160 338 153 HOH HOH . C 3 HOH A 161 339 154 HOH HOH . C 3 HOH A 162 340 155 HOH HOH . C 3 HOH A 163 341 156 HOH HOH . C 3 HOH A 164 342 158 HOH HOH . C 3 HOH A 165 343 159 HOH HOH . C 3 HOH A 166 344 163 HOH HOH . C 3 HOH A 167 345 164 HOH HOH . C 3 HOH A 168 346 165 HOH HOH . C 3 HOH A 169 347 166 HOH HOH . C 3 HOH A 170 348 167 HOH HOH . C 3 HOH A 171 349 168 HOH HOH . C 3 HOH A 172 350 169 HOH HOH . C 3 HOH A 173 351 170 HOH HOH . C 3 HOH A 174 352 171 HOH HOH . C 3 HOH A 175 353 172 HOH HOH . C 3 HOH A 176 354 173 HOH HOH . C 3 HOH A 177 355 174 HOH HOH . C 3 HOH A 178 356 175 HOH HOH . C 3 HOH A 179 357 176 HOH HOH . C 3 HOH A 180 358 177 HOH HOH . C 3 HOH A 181 359 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 LEC . . . B 2 35.896 50.209 14.033 1 11.47 ? C8 LEC 178 A 1 HETATM 2 C C7 LEC . . . B 2 36.933 49.805 15.065 1 16.48 ? C7 LEC 178 A 1 HETATM 3 O O7 LEC . . . B 2 36.939 50.318 16.206 1 17.93 ? O7 LEC 178 A 1 HETATM 4 N N2 LEC . . . B 2 37.779 48.848 14.654 1 13.81 ? N2 LEC 178 A 1 HETATM 5 C C2 LEC . . . B 2 37.764 48.23 13.307 1 12.43 ? C2 LEC 178 A 1 HETATM 6 C C3 LEC . . . B 2 37.685 46.687 13.439 1 12.54 ? C3 LEC 178 A 1 HETATM 7 O O3 LEC . . . B 2 36.361 46.3 13.867 1 9.25 ? O3 LEC 178 A 1 HETATM 8 C C4 LEC . . . B 2 38.071 45.939 12.134 1 10.88 ? C4 LEC 178 A 1 HETATM 9 O O4 LEC . . . B 2 38.184 44.522 12.386 1 11.78 ? O4 LEC 178 A 1 HETATM 10 C C5 LEC . . . B 2 39.386 46.478 11.543 1 11.88 ? C5 LEC 178 A 1 HETATM 11 C C6 LEC . . . B 2 39.783 45.77 10.214 1 10.5 ? C6 LEC 178 A 1 HETATM 12 O O6 LEC . . . B 2 38.874 46.114 9.169 1 10.34 ? O6 LEC 178 A 1 HETATM 13 O O5 LEC . . . B 2 39.33 47.92 11.326 1 12.95 ? O5 LEC 178 A 1 HETATM 14 C C1 LEC . . . B 2 39.022 48.704 12.535 1 13.49 ? C1 LEC 178 A 1 HETATM 15 O O1 LEC . . . B 2 38.751 50.066 12.13 1 16.11 ? O1 LEC 178 A 1 HETATM 16 C C1' LEC . . . B 2 39.778 50.848 11.652 1 19.55 ? C1' LEC 178 A 1 HETATM 17 C C2' LEC . . . B 2 40.67 50.393 10.687 1 22.75 ? C2' LEC 178 A 1 HETATM 18 C C3' LEC . . . B 2 41.691 51.21 10.186 1 23.9 ? C3' LEC 178 A 1 HETATM 19 C C4' LEC . . . B 2 41.818 52.516 10.647 1 24.72 ? C4' LEC 178 A 1 HETATM 20 N N1' LEC . . . B 2 42.784 53.34 10.202 1 24.66 ? N1' LEC 178 A 1 HETATM 21 O O2' LEC . . . B 2 43.814 52.918 9.345 1 26.47 ? O2' LEC 178 A 1 HETATM 22 O O1' LEC . . . B 2 42.792 54.667 10.628 1 27.22 ? O1' LEC 178 A 1 HETATM 23 C C5' LEC . . . B 2 40.922 52.971 11.609 1 22.13 ? C5' LEC 178 A 1 HETATM 24 C C6' LEC . . . B 2 39.908 52.156 12.101 1 21.42 ? C6' LEC 178 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #