data_3F65 # _model_server_result.job_id dBZswhODeOopU4ZLqobjzA _model_server_result.datetime_utc '2024-11-18 12:39:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":225}' # _entry.id 3F65 # _exptl.entry_id 3F65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.15 _cell.angle_gamma 90 _cell.entry_id 3F65 _cell.length_a 195.689 _cell.length_b 78.491 _cell.length_c 184.567 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 PISA monomeric 1 author_and_software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,J,M 1 1 B,N 2 1 C,K,O 3 1 D,P 4 1 E,Q 5 1 F,R 6 1 G,L,S 7 1 H,T 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 224 n n C1 H11 MPD sing 225 n n C1 H12 MPD sing 226 n n C1 H13 MPD sing 227 n n C2 O2 MPD sing 228 n n C2 CM MPD sing 229 n n C2 C3 MPD sing 230 n n O2 HO2 MPD sing 231 n n CM HM1 MPD sing 232 n n CM HM2 MPD sing 233 n n CM HM3 MPD sing 234 n n C3 C4 MPD sing 235 n n C3 H31 MPD sing 236 n n C3 H32 MPD sing 237 n n C4 O4 MPD sing 238 n n C4 C5 MPD sing 239 n n C4 H4 MPD sing 240 n n O4 HO4 MPD sing 241 n n C5 H51 MPD sing 242 n n C5 H52 MPD sing 243 n n C5 H53 MPD sing 244 n n # _atom_sites.entry_id 3F65 _atom_sites.fract_transf_matrix[1][1] 0.00511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0011 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005542 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 MPD A 1 225 1 MPD MPD . J 3 PO4 A 1 226 1 PO4 PO4 . K 2 MPD C 1 225 1 MPD MPD . L 2 MPD G 1 225 1 MPD MPD . M 4 HOH A 1 227 19 HOH HOH . M 4 HOH A 2 228 20 HOH HOH . M 4 HOH A 3 229 21 HOH HOH . M 4 HOH A 4 230 22 HOH HOH . M 4 HOH A 5 231 23 HOH HOH . M 4 HOH A 6 232 24 HOH HOH . M 4 HOH A 7 233 25 HOH HOH . M 4 HOH A 8 234 26 HOH HOH . M 4 HOH A 9 235 27 HOH HOH . M 4 HOH A 10 236 28 HOH HOH . M 4 HOH A 11 237 29 HOH HOH . M 4 HOH A 12 238 32 HOH HOH . M 4 HOH A 13 239 34 HOH HOH . M 4 HOH A 14 240 35 HOH HOH . M 4 HOH A 15 241 36 HOH HOH . M 4 HOH A 16 242 38 HOH HOH . M 4 HOH A 17 243 39 HOH HOH . M 4 HOH A 18 244 40 HOH HOH . M 4 HOH A 19 245 41 HOH HOH . M 4 HOH A 20 246 43 HOH HOH . M 4 HOH A 21 247 44 HOH HOH . M 4 HOH A 22 248 46 HOH HOH . M 4 HOH A 23 249 48 HOH HOH . M 4 HOH A 24 250 50 HOH HOH . M 4 HOH A 25 251 51 HOH HOH . M 4 HOH A 26 252 52 HOH HOH . M 4 HOH A 27 253 53 HOH HOH . M 4 HOH A 28 254 54 HOH HOH . M 4 HOH A 29 255 80 HOH HOH . M 4 HOH A 30 256 81 HOH HOH . M 4 HOH A 31 257 85 HOH HOH . M 4 HOH A 32 258 86 HOH HOH . M 4 HOH A 33 259 87 HOH HOH . M 4 HOH A 34 260 93 HOH HOH . M 4 HOH A 35 261 94 HOH HOH . M 4 HOH A 36 262 97 HOH HOH . M 4 HOH A 37 263 98 HOH HOH . M 4 HOH A 38 264 99 HOH HOH . M 4 HOH A 39 265 100 HOH HOH . M 4 HOH A 40 266 101 HOH HOH . M 4 HOH A 41 267 267 HOH HOH . M 4 HOH A 42 268 268 HOH HOH . M 4 HOH A 43 269 269 HOH HOH . M 4 HOH A 44 270 102 HOH HOH . M 4 HOH A 45 271 271 HOH HOH . M 4 HOH A 46 272 272 HOH HOH . M 4 HOH A 47 273 103 HOH HOH . M 4 HOH A 48 274 274 HOH HOH . M 4 HOH A 49 275 104 HOH HOH . M 4 HOH A 50 276 276 HOH HOH . M 4 HOH A 51 277 105 HOH HOH . M 4 HOH A 52 278 278 HOH HOH . M 4 HOH A 53 279 279 HOH HOH . M 4 HOH A 54 280 280 HOH HOH . M 4 HOH A 55 281 281 HOH HOH . M 4 HOH A 56 282 282 HOH HOH . M 4 HOH A 57 283 106 HOH HOH . M 4 HOH A 58 284 284 HOH HOH . M 4 HOH A 59 285 107 HOH HOH . M 4 HOH A 60 286 108 HOH HOH . M 4 HOH A 61 287 110 HOH HOH . M 4 HOH A 62 288 112 HOH HOH . M 4 HOH A 63 289 114 HOH HOH . M 4 HOH A 64 290 115 HOH HOH . M 4 HOH A 65 291 116 HOH HOH . M 4 HOH A 66 292 117 HOH HOH . M 4 HOH A 67 293 119 HOH HOH . M 4 HOH A 68 294 120 HOH HOH . M 4 HOH A 69 295 121 HOH HOH . M 4 HOH A 70 296 122 HOH HOH . M 4 HOH A 71 297 123 HOH HOH . M 4 HOH A 72 298 124 HOH HOH . M 4 HOH A 73 299 125 HOH HOH . M 4 HOH A 74 300 126 HOH HOH . M 4 HOH A 75 301 127 HOH HOH . M 4 HOH A 76 302 128 HOH HOH . M 4 HOH A 77 303 129 HOH HOH . M 4 HOH A 78 304 304 HOH HOH . M 4 HOH A 79 305 130 HOH HOH . M 4 HOH A 80 306 131 HOH HOH . M 4 HOH A 81 310 310 HOH HOH . M 4 HOH A 82 311 311 HOH HOH . M 4 HOH A 83 312 312 HOH HOH . M 4 HOH A 84 313 313 HOH HOH . M 4 HOH A 85 314 314 HOH HOH . M 4 HOH A 86 318 318 HOH HOH . M 4 HOH A 87 321 321 HOH HOH . M 4 HOH A 88 322 322 HOH HOH . M 4 HOH A 89 323 323 HOH HOH . N 4 HOH B 1 225 55 HOH HOH . N 4 HOH B 2 226 56 HOH HOH . N 4 HOH B 3 227 57 HOH HOH . N 4 HOH B 4 228 58 HOH HOH . N 4 HOH B 5 229 59 HOH HOH . N 4 HOH B 6 230 61 HOH HOH . N 4 HOH B 7 231 62 HOH HOH . N 4 HOH B 8 232 63 HOH HOH . N 4 HOH B 9 233 64 HOH HOH . N 4 HOH B 10 234 65 HOH HOH . N 4 HOH B 11 235 68 HOH HOH . N 4 HOH B 12 236 70 HOH HOH . N 4 HOH B 13 237 71 HOH HOH . N 4 HOH B 14 238 73 HOH HOH . N 4 HOH B 15 239 96 HOH HOH . N 4 HOH B 16 240 133 HOH HOH . N 4 HOH B 17 241 134 HOH HOH . N 4 HOH B 18 242 135 HOH HOH . N 4 HOH B 19 243 136 HOH HOH . N 4 HOH B 20 244 137 HOH HOH . N 4 HOH B 21 245 138 HOH HOH . N 4 HOH B 22 246 139 HOH HOH . N 4 HOH B 23 247 140 HOH HOH . N 4 HOH B 24 248 141 HOH HOH . N 4 HOH B 25 249 142 HOH HOH . N 4 HOH B 26 250 143 HOH HOH . N 4 HOH B 27 251 144 HOH HOH . N 4 HOH B 28 252 146 HOH HOH . N 4 HOH B 29 253 147 HOH HOH . N 4 HOH B 30 254 148 HOH HOH . N 4 HOH B 31 255 149 HOH HOH . N 4 HOH B 32 256 150 HOH HOH . N 4 HOH B 33 257 151 HOH HOH . N 4 HOH B 34 258 152 HOH HOH . N 4 HOH B 35 259 154 HOH HOH . N 4 HOH B 36 260 155 HOH HOH . N 4 HOH B 37 261 156 HOH HOH . N 4 HOH B 38 262 213 HOH HOH . N 4 HOH B 39 263 214 HOH HOH . N 4 HOH B 40 264 215 HOH HOH . N 4 HOH B 41 265 216 HOH HOH . N 4 HOH B 42 266 217 HOH HOH . N 4 HOH B 43 288 288 HOH HOH . N 4 HOH B 44 290 290 HOH HOH . N 4 HOH B 45 291 291 HOH HOH . N 4 HOH B 46 292 292 HOH HOH . N 4 HOH B 47 309 309 HOH HOH . N 4 HOH B 48 324 324 HOH HOH . N 4 HOH B 49 325 325 HOH HOH . N 4 HOH B 50 327 327 HOH HOH . N 4 HOH B 51 328 328 HOH HOH . N 4 HOH B 52 329 329 HOH HOH . N 4 HOH B 53 330 330 HOH HOH . N 4 HOH B 54 331 331 HOH HOH . N 4 HOH B 55 332 332 HOH HOH . N 4 HOH B 56 333 333 HOH HOH . N 4 HOH B 57 334 334 HOH HOH . N 4 HOH B 58 339 339 HOH HOH . O 4 HOH C 1 226 1 HOH HOH . O 4 HOH C 2 227 2 HOH HOH . O 4 HOH C 3 228 3 HOH HOH . O 4 HOH C 4 229 4 HOH HOH . O 4 HOH C 5 230 5 HOH HOH . O 4 HOH C 6 231 6 HOH HOH . O 4 HOH C 7 232 7 HOH HOH . O 4 HOH C 8 233 8 HOH HOH . O 4 HOH C 9 234 9 HOH HOH . O 4 HOH C 10 235 10 HOH HOH . O 4 HOH C 11 236 11 HOH HOH . O 4 HOH C 12 237 12 HOH HOH . O 4 HOH C 13 238 13 HOH HOH . O 4 HOH C 14 239 14 HOH HOH . O 4 HOH C 15 240 15 HOH HOH . O 4 HOH C 16 241 16 HOH HOH . O 4 HOH C 17 242 17 HOH HOH . O 4 HOH C 18 243 18 HOH HOH . O 4 HOH C 19 244 33 HOH HOH . O 4 HOH C 20 245 79 HOH HOH . O 4 HOH C 21 246 95 HOH HOH . O 4 HOH C 22 247 113 HOH HOH . O 4 HOH C 23 248 157 HOH HOH . O 4 HOH C 24 249 158 HOH HOH . O 4 HOH C 25 250 159 HOH HOH . O 4 HOH C 26 251 160 HOH HOH . O 4 HOH C 27 252 161 HOH HOH . O 4 HOH C 28 253 162 HOH HOH . O 4 HOH C 29 254 164 HOH HOH . O 4 HOH C 30 255 165 HOH HOH . O 4 HOH C 31 256 167 HOH HOH . O 4 HOH C 32 257 168 HOH HOH . O 4 HOH C 33 258 169 HOH HOH . O 4 HOH C 34 259 170 HOH HOH . O 4 HOH C 35 260 171 HOH HOH . O 4 HOH C 36 261 172 HOH HOH . O 4 HOH C 37 262 173 HOH HOH . O 4 HOH C 38 263 175 HOH HOH . O 4 HOH C 39 264 177 HOH HOH . O 4 HOH C 40 265 179 HOH HOH . O 4 HOH C 41 266 180 HOH HOH . O 4 HOH C 42 267 181 HOH HOH . O 4 HOH C 43 268 182 HOH HOH . O 4 HOH C 44 269 183 HOH HOH . O 4 HOH C 45 270 270 HOH HOH . O 4 HOH C 46 271 184 HOH HOH . O 4 HOH C 47 272 185 HOH HOH . O 4 HOH C 48 273 189 HOH HOH . O 4 HOH C 49 274 193 HOH HOH . O 4 HOH C 50 275 194 HOH HOH . O 4 HOH C 51 276 195 HOH HOH . O 4 HOH C 52 277 196 HOH HOH . O 4 HOH C 53 278 197 HOH HOH . O 4 HOH C 54 279 198 HOH HOH . O 4 HOH C 55 280 202 HOH HOH . O 4 HOH C 56 281 205 HOH HOH . O 4 HOH C 57 282 206 HOH HOH . O 4 HOH C 58 283 208 HOH HOH . O 4 HOH C 59 284 209 HOH HOH . O 4 HOH C 60 285 211 HOH HOH . O 4 HOH C 61 286 218 HOH HOH . O 4 HOH C 62 287 219 HOH HOH . O 4 HOH C 63 288 220 HOH HOH . O 4 HOH C 64 293 293 HOH HOH . O 4 HOH C 65 294 294 HOH HOH . O 4 HOH C 66 295 295 HOH HOH . O 4 HOH C 67 296 296 HOH HOH . O 4 HOH C 68 297 297 HOH HOH . O 4 HOH C 69 298 298 HOH HOH . O 4 HOH C 70 299 299 HOH HOH . O 4 HOH C 71 300 300 HOH HOH . O 4 HOH C 72 302 302 HOH HOH . O 4 HOH C 73 315 315 HOH HOH . O 4 HOH C 74 336 336 HOH HOH . O 4 HOH C 75 337 337 HOH HOH . O 4 HOH C 76 338 338 HOH HOH . O 4 HOH C 77 340 340 HOH HOH . O 4 HOH C 78 341 341 HOH HOH . O 4 HOH C 79 342 342 HOH HOH . O 4 HOH C 80 343 343 HOH HOH . O 4 HOH C 81 344 344 HOH HOH . O 4 HOH C 82 345 345 HOH HOH . O 4 HOH C 83 346 346 HOH HOH . O 4 HOH C 84 350 350 HOH HOH . O 4 HOH C 85 360 360 HOH HOH . P 4 HOH D 1 225 30 HOH HOH . P 4 HOH D 2 226 226 HOH HOH . P 4 HOH D 3 227 227 HOH HOH . P 4 HOH D 4 228 228 HOH HOH . P 4 HOH D 5 229 229 HOH HOH . P 4 HOH D 6 230 230 HOH HOH . P 4 HOH D 7 231 74 HOH HOH . P 4 HOH D 8 232 75 HOH HOH . P 4 HOH D 9 233 76 HOH HOH . P 4 HOH D 10 234 77 HOH HOH . P 4 HOH D 11 235 78 HOH HOH . P 4 HOH D 12 236 82 HOH HOH . P 4 HOH D 13 237 83 HOH HOH . P 4 HOH D 14 238 84 HOH HOH . P 4 HOH D 15 239 88 HOH HOH . P 4 HOH D 16 240 89 HOH HOH . P 4 HOH D 17 241 90 HOH HOH . P 4 HOH D 18 242 91 HOH HOH . P 4 HOH D 19 243 111 HOH HOH . P 4 HOH D 20 244 118 HOH HOH . P 4 HOH D 21 245 186 HOH HOH . P 4 HOH D 22 246 187 HOH HOH . P 4 HOH D 23 247 188 HOH HOH . P 4 HOH D 24 248 223 HOH HOH . P 4 HOH D 25 249 224 HOH HOH . P 4 HOH D 26 277 277 HOH HOH . P 4 HOH D 27 303 303 HOH HOH . P 4 HOH D 28 347 347 HOH HOH . P 4 HOH D 29 348 348 HOH HOH . P 4 HOH D 30 349 349 HOH HOH . P 4 HOH D 31 351 351 HOH HOH . P 4 HOH D 32 358 358 HOH HOH . Q 4 HOH E 1 231 231 HOH HOH . Q 4 HOH E 2 234 234 HOH HOH . Q 4 HOH E 3 237 237 HOH HOH . Q 4 HOH E 4 238 238 HOH HOH . Q 4 HOH E 5 239 239 HOH HOH . Q 4 HOH E 6 241 241 HOH HOH . Q 4 HOH E 7 242 242 HOH HOH . Q 4 HOH E 8 244 244 HOH HOH . Q 4 HOH E 9 245 245 HOH HOH . Q 4 HOH E 10 258 258 HOH HOH . Q 4 HOH E 11 259 259 HOH HOH . Q 4 HOH E 12 261 261 HOH HOH . Q 4 HOH E 13 262 262 HOH HOH . Q 4 HOH E 14 263 263 HOH HOH . Q 4 HOH E 15 305 305 HOH HOH . Q 4 HOH E 16 306 306 HOH HOH . Q 4 HOH E 17 307 307 HOH HOH . Q 4 HOH E 18 353 353 HOH HOH . R 4 HOH F 1 246 246 HOH HOH . R 4 HOH F 2 249 249 HOH HOH . R 4 HOH F 3 250 250 HOH HOH . R 4 HOH F 4 352 352 HOH HOH . R 4 HOH F 5 354 354 HOH HOH . S 4 HOH G 1 254 254 HOH HOH . T 4 HOH H 1 235 235 HOH HOH . T 4 HOH H 2 240 240 HOH HOH . T 4 HOH H 3 247 247 HOH HOH . T 4 HOH H 4 253 253 HOH HOH . T 4 HOH H 5 255 255 HOH HOH . T 4 HOH H 6 256 256 HOH HOH . T 4 HOH H 7 257 257 HOH HOH . T 4 HOH H 8 260 260 HOH HOH . T 4 HOH H 9 355 355 HOH HOH . T 4 HOH H 10 356 356 HOH HOH . T 4 HOH H 11 359 359 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . I 2 38.267 26.236 -0.869 1 83.38 ? C1 MPD 225 A 1 HETATM 2 C C2 MPD . . . I 2 38.143 25.043 0.062 1 90.86 ? C2 MPD 225 A 1 HETATM 3 O O2 MPD . . . I 2 39.241 24.143 -0.246 1 88.36 ? O2 MPD 225 A 1 HETATM 4 C CM MPD . . . I 2 38.22 25.507 1.514 1 94.53 ? CM MPD 225 A 1 HETATM 5 C C3 MPD . . . I 2 36.835 24.308 -0.195 1 90.06 ? C3 MPD 225 A 1 HETATM 6 C C4 MPD . . . I 2 36.969 22.823 0.118 1 81.97 ? C4 MPD 225 A 1 HETATM 7 O O4 MPD . . . I 2 37.839 22.641 1.216 1 72.93 ? O4 MPD 225 A 1 HETATM 8 C C5 MPD . . . I 2 35.608 22.205 0.426 1 86.79 ? C5 MPD 225 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #