data_3F68
#
_model_server_result.job_id            kRc_dX1b5qSZGHaIkpRygA 
_model_server_result.datetime_utc      '2025-06-21 01:53:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3f68 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    3F68 
#
_exptl.entry_id    3F68 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              433.971 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-acetyl-3-cyclohexyl-D-alanyl-N-(3-chlorobenzyl)-L-prolinamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.05 
_cell.angle_gamma         90 
_cell.entry_id            3F68 
_cell.length_a            70.28 
_cell.length_b            71.95 
_cell.length_c            72.5 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3F68 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 C C GLU 9 I GLU 62 1_555 C N TYS 10 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
metalc ? metalc1 B O LYS 174 H LYS 169 1_555 F NA NA . H NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc2 B O THR 177 H THR 172 1_555 F NA NA . H NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc3 B O ARG 233 H ARG 221 1_555 E NA NA . H NA 902 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc4 B O LYS 236 H LYS 224 1_555 E NA NA . H NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc5 E NA NA . H NA 902 1_555 H O HOH . H HOH 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc6 E NA NA . H NA 902 1_555 H O HOH . H HOH 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc7 E NA NA . H NA 902 1_555 H O HOH . H HOH 1050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? 
metalc ? metalc8 E NA NA . H NA 902 1_555 H O HOH . H HOH 1081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc9 F NA NA . H NA 903 1_555 H O HOH . H HOH 1023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc10 F NA NA . H NA 903 1_555 H O HOH . H HOH 1052 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc11 F NA NA . H NA 903 1_555 H O HOH . H HOH 1070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
#
_chem_comp.formula           'C23 H32 Cl N3 O3' 
_chem_comp.formula_weight    433.971 
_chem_comp.id                91U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-acetyl-3-cyclohexyl-D-alanyl-N-(3-chlorobenzyl)-L-prolinamide 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C31 C15 91U sing 1 n n 
C31 C1 91U sing 2 n n 
N C47 91U sing 3 n n 
N C15 91U sing 4 n n 
C47 C49 91U sing 5 n n 
C47 O48 91U doub 6 n n 
C15 C14 91U sing 7 n n 
C14 O32 91U doub 8 n n 
C14 N1 91U sing 9 n n 
N1 C33 91U sing 10 n n 
N1 C32 91U sing 11 n n 
C33 C34 91U sing 12 n n 
C34 C35 91U sing 13 n n 
C35 C32 91U sing 14 n n 
C32 C7 91U sing 15 n n 
C7 N23 91U sing 16 n n 
C7 O22 91U doub 17 n n 
N23 C24 91U sing 18 n n 
C24 C25 91U sing 19 n n 
C25 C30 91U doub 20 n y 
C25 C26 91U sing 21 n y 
C30 C29 91U sing 22 n y 
C29 C28 91U doub 23 n y 
C29 CL21 91U sing 24 n n 
C28 C27 91U sing 25 n y 
C27 C26 91U doub 26 n y 
C1 C6 91U sing 27 n n 
C1 C2 91U sing 28 n n 
C6 C5 91U sing 29 n n 
C5 C4 91U sing 30 n n 
C4 C3 91U sing 31 n n 
C3 C2 91U sing 32 n n 
C31 H31 91U sing 33 n n 
C31 H31A 91U sing 34 n n 
N HN 91U sing 35 n n 
C49 H49 91U sing 36 n n 
C49 H49A 91U sing 37 n n 
C49 H49B 91U sing 38 n n 
C15 H15 91U sing 39 n n 
C33 H33 91U sing 40 n n 
C33 H33A 91U sing 41 n n 
C34 H34 91U sing 42 n n 
C34 H34A 91U sing 43 n n 
C35 H35 91U sing 44 n n 
C35 H35A 91U sing 45 n n 
C32 H32 91U sing 46 n n 
N23 HN23 91U sing 47 n n 
C24 H24 91U sing 48 n n 
C24 H24A 91U sing 49 n n 
C30 H30 91U sing 50 n n 
C28 H28 91U sing 51 n n 
C27 H27 91U sing 52 n n 
C26 H26 91U sing 53 n n 
C1 H1 91U sing 54 n n 
C6 H6 91U sing 55 n n 
C6 H6A 91U sing 56 n n 
C5 H5 91U sing 57 n n 
C5 H5A 91U sing 58 n n 
C4 H4 91U sing 59 n n 
C4 H4A 91U sing 60 n n 
C3 H3 91U sing 61 n n 
C3 H3A 91U sing 62 n n 
C2 H2 91U sing 63 n n 
C2 H2A 91U sing 64 n n 
#
_atom_sites.entry_id                     3F68 
_atom_sites.fract_transf_matrix[1][1]    0.014229 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002522 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013899 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014008 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 91U H 1 901 901 91U 91U . 
E 5 NA H 1 902 902 NA NA . 
F 5 NA H 1 903 903 NA NA . 
G 6 HOH L 1 1006 1006 HOH HOH . 
G 6 HOH L 2 1012 1012 HOH HOH . 
G 6 HOH L 3 1024 1024 HOH HOH . 
G 6 HOH L 4 1026 1026 HOH HOH . 
G 6 HOH L 5 1056 1056 HOH HOH . 
G 6 HOH L 6 1060 1060 HOH HOH . 
G 6 HOH L 7 1064 1064 HOH HOH . 
G 6 HOH L 8 1073 1073 HOH HOH . 
G 6 HOH L 9 1074 1074 HOH HOH . 
G 6 HOH L 10 1080 1080 HOH HOH . 
G 6 HOH L 11 1085 1085 HOH HOH . 
H 6 HOH H 1 1001 1001 HOH HOH . 
H 6 HOH H 2 1002 1002 HOH HOH . 
H 6 HOH H 3 1003 1003 HOH HOH . 
H 6 HOH H 4 1004 1004 HOH HOH . 
H 6 HOH H 5 1005 1005 HOH HOH . 
H 6 HOH H 6 1007 1007 HOH HOH . 
H 6 HOH H 7 1008 1008 HOH HOH . 
H 6 HOH H 8 1009 1009 HOH HOH . 
H 6 HOH H 9 1010 1010 HOH HOH . 
H 6 HOH H 10 1011 1011 HOH HOH . 
H 6 HOH H 11 1013 1013 HOH HOH . 
H 6 HOH H 12 1014 1014 HOH HOH . 
H 6 HOH H 13 1015 1015 HOH HOH . 
H 6 HOH H 14 1016 1016 HOH HOH . 
H 6 HOH H 15 1017 1017 HOH HOH . 
H 6 HOH H 16 1018 1018 HOH HOH . 
H 6 HOH H 17 1019 1019 HOH HOH . 
H 6 HOH H 18 1020 1020 HOH HOH . 
H 6 HOH H 19 1021 1021 HOH HOH . 
H 6 HOH H 20 1022 1022 HOH HOH . 
H 6 HOH H 21 1023 1023 HOH HOH . 
H 6 HOH H 22 1025 1025 HOH HOH . 
H 6 HOH H 23 1027 1027 HOH HOH . 
H 6 HOH H 24 1028 1028 HOH HOH . 
H 6 HOH H 25 1029 1029 HOH HOH . 
H 6 HOH H 26 1030 1030 HOH HOH . 
H 6 HOH H 27 1031 1031 HOH HOH . 
H 6 HOH H 28 1032 1032 HOH HOH . 
H 6 HOH H 29 1033 1033 HOH HOH . 
H 6 HOH H 30 1034 1034 HOH HOH . 
H 6 HOH H 31 1035 1035 HOH HOH . 
H 6 HOH H 32 1036 1036 HOH HOH . 
H 6 HOH H 33 1037 1037 HOH HOH . 
H 6 HOH H 34 1038 1038 HOH HOH . 
H 6 HOH H 35 1039 1039 HOH HOH . 
H 6 HOH H 36 1040 1040 HOH HOH . 
H 6 HOH H 37 1041 1041 HOH HOH . 
H 6 HOH H 38 1042 1042 HOH HOH . 
H 6 HOH H 39 1043 1043 HOH HOH . 
H 6 HOH H 40 1044 1044 HOH HOH . 
H 6 HOH H 41 1045 1045 HOH HOH . 
H 6 HOH H 42 1046 1046 HOH HOH . 
H 6 HOH H 43 1047 1047 HOH HOH . 
H 6 HOH H 44 1048 1048 HOH HOH . 
H 6 HOH H 45 1049 1049 HOH HOH . 
H 6 HOH H 46 1050 1050 HOH HOH . 
H 6 HOH H 47 1051 1051 HOH HOH . 
H 6 HOH H 48 1052 1052 HOH HOH . 
H 6 HOH H 49 1053 1053 HOH HOH . 
H 6 HOH H 50 1054 1054 HOH HOH . 
H 6 HOH H 51 1055 1055 HOH HOH . 
H 6 HOH H 52 1057 1057 HOH HOH . 
H 6 HOH H 53 1058 1058 HOH HOH . 
H 6 HOH H 54 1059 1059 HOH HOH . 
H 6 HOH H 55 1061 1061 HOH HOH . 
H 6 HOH H 56 1062 1062 HOH HOH . 
H 6 HOH H 57 1063 1063 HOH HOH . 
H 6 HOH H 58 1065 1065 HOH HOH . 
H 6 HOH H 59 1066 1066 HOH HOH . 
H 6 HOH H 60 1067 1067 HOH HOH . 
H 6 HOH H 61 1068 1068 HOH HOH . 
H 6 HOH H 62 1069 1069 HOH HOH . 
H 6 HOH H 63 1070 1070 HOH HOH . 
H 6 HOH H 64 1071 1071 HOH HOH . 
H 6 HOH H 65 1072 1072 HOH HOH . 
H 6 HOH H 66 1075 1075 HOH HOH . 
H 6 HOH H 67 1076 1076 HOH HOH . 
H 6 HOH H 68 1077 1077 HOH HOH . 
H 6 HOH H 69 1078 1078 HOH HOH . 
H 6 HOH H 70 1079 1079 HOH HOH . 
H 6 HOH H 71 1081 1081 HOH HOH . 
H 6 HOH H 72 1082 1082 HOH HOH . 
H 6 HOH H 73 1083 1083 HOH HOH . 
H 6 HOH H 74 1084 1084 HOH HOH . 
H 6 HOH H 75 1086 1086 HOH HOH . 
H 6 HOH H 76 1087 1087 HOH HOH . 
H 6 HOH H 77 1088 1088 HOH HOH . 
H 6 HOH H 78 1089 1089 HOH HOH . 
H 6 HOH H 79 1090 1090 HOH HOH . 
H 6 HOH H 80 1091 1091 HOH HOH . 
H 6 HOH H 81 1092 1092 HOH HOH . 
H 6 HOH H 82 1093 1093 HOH HOH . 
H 6 HOH H 83 1094 1094 HOH HOH . 
H 6 HOH H 84 1096 1096 HOH HOH . 
H 6 HOH H 85 1097 1097 HOH HOH . 
H 6 HOH H 86 1098 1098 HOH HOH . 
H 6 HOH H 87 1099 1099 HOH HOH . 
H 6 HOH H 88 1101 1101 HOH HOH . 
H 6 HOH H 89 1102 1102 HOH HOH . 
H 6 HOH H 90 1103 1103 HOH HOH . 
H 6 HOH H 91 1104 1104 HOH HOH . 
H 6 HOH H 92 1105 1105 HOH HOH . 
H 6 HOH H 93 1106 1106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C47 91U . . . D 4 17.246 -17.062 23.764 1 65.47 ? C47 91U 901 H 1 
HETATM 2 O O48 91U . . . D 4 18.083 -17.793 23.247 1 79.54 ? O48 91U 901 H 1 
HETATM 3 C C49 91U . . . D 4 16.673 -17.51 25.083 1 82.55 ? C49 91U 901 H 1 
HETATM 4 C C1 91U . . . D 4 19.596 -14.369 25.012 1 49.45 ? C1 91U 901 H 1 
HETATM 5 C C6 91U . . . D 4 20.434 -14.473 23.703 1 49.73 ? C6 91U 901 H 1 
HETATM 6 C C5 91U . . . D 4 21.931 -14.671 24.048 1 52.22 ? C5 91U 901 H 1 
HETATM 7 C C4 91U . . . D 4 22.432 -13.532 24.955 1 44.03 ? C4 91U 901 H 1 
HETATM 8 C C3 91U . . . D 4 21.535 -13.261 26.178 1 43.65 ? C3 91U 901 H 1 
HETATM 9 C C2 91U . . . D 4 20.041 -13.096 25.782 1 46.79 ? C2 91U 901 H 1 
HETATM 10 N N 91U . . . D 4 16.897 -15.896 23.139 1 54.99 ? N 91U 901 H 1 
HETATM 11 C C15 91U . . . D 4 17.804 -14.742 23.194 1 44.43 ? C15 91U 901 H 1 
HETATM 12 C C31 91U . . . D 4 18.066 -14.425 24.704 1 51.68 ? C31 91U 901 H 1 
HETATM 13 C C14 91U . . . D 4 17.269 -13.532 22.462 1 49.45 ? C14 91U 901 H 1 
HETATM 14 O O32 91U . . . D 4 16.222 -13.073 22.902 1 43.18 ? O32 91U 901 H 1 
HETATM 15 N N1 91U . . . D 4 17.929 -12.993 21.393 1 51.47 ? N1 91U 901 H 1 
HETATM 16 C C32 91U . . . D 4 17.484 -11.776 20.739 1 42.72 ? C32 91U 901 H 1 
HETATM 17 C C7 91U . . . D 4 15.999 -11.737 20.46 1 47.85 ? C7 91U 901 H 1 
HETATM 18 O O22 91U . . . D 4 15.42 -12.743 20.072 1 70.47 ? O22 91U 901 H 1 
HETATM 19 C C35 91U . . . D 4 18.26 -11.909 19.392 1 50.78 ? C35 91U 901 H 1 
HETATM 20 C C34 91U . . . D 4 19.578 -12.604 19.799 1 50.62 ? C34 91U 901 H 1 
HETATM 21 C C33 91U . . . D 4 19.09 -13.678 20.801 1 51.39 ? C33 91U 901 H 1 
HETATM 22 N N23 91U . . . D 4 15.308 -10.583 20.646 1 42.22 ? N23 91U 901 H 1 
HETATM 23 C C24 91U . . . D 4 13.873 -10.596 20.356 1 41 ? C24 91U 901 H 1 
HETATM 24 C C25 91U . . . D 4 13.016 -10.495 21.623 1 30.02 ? C25 91U 901 H 1 
HETATM 25 C C26 91U . . . D 4 12.144 -11.525 21.971 1 28.71 ? C26 91U 901 H 1 
HETATM 26 C C27 91U . . . D 4 11.37 -11.447 23.135 1 39.44 ? C27 91U 901 H 1 
HETATM 27 C C28 91U . . . D 4 11.428 -10.292 23.942 1 41.27 ? C28 91U 901 H 1 
HETATM 28 C C29 91U . . . D 4 12.322 -9.271 23.607 1 33.9 ? C29 91U 901 H 1 
HETATM 29 C C30 91U . . . D 4 13.073 -9.343 22.423 1 26.25 ? C30 91U 901 H 1 
HETATM 30 CL CL21 91U . . . D 4 12.457 -7.854 24.634 1 37.03 ? CL21 91U 901 H 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#