data_3F69 # _model_server_result.job_id F0ChkpKLWdoXkManOR7eyg _model_server_result.datetime_utc '2024-11-24 18:25:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":309}' # _entry.id 3F69 # _exptl.entry_id 3F69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 535.59 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'hexyl (5S,6R,8R)-6-hydroxy-5-methyl-13-oxo-5,6,7,8-tetrahydro-13H-5,8-epoxy-4b,8a,14-triazadibenzo[b,h]cycloocta[1,2,3,4-jkl]c yclopenta[e]-as-indacene-6-carboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F69 _cell.length_a 297.557 _cell.length_b 297.557 _cell.length_c 297.557 _cell.Z_PDB 192 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C VAL 173 B VAL 170 1_555 B N TPO 174 B TPO 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C TPO 174 B TPO 171 1_555 B N GLN 175 B GLN 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C32 H29 N3 O5' _chem_comp.formula_weight 535.59 _chem_comp.id XDR _chem_comp.mon_nstd_flag . _chem_comp.name 'hexyl (5S,6R,8R)-6-hydroxy-5-methyl-13-oxo-5,6,7,8-tetrahydro-13H-5,8-epoxy-4b,8a,14-triazadibenzo[b,h]cycloocta[1,2,3,4-jkl]c yclopenta[e]-as-indacene-6-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms KT5720 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAR OAV XDR sing 373 n n CAR HAR XDR sing 374 n n CAR HARA XDR sing 375 n n CAR C28 XDR sing 376 n n OAV CAY XDR sing 377 n n CAY CBM XDR sing 378 n n OAD CAY XDR doub 379 n n CBM OAE XDR sing 380 n n CBM CBN XDR sing 381 n n OAE HOAE XDR sing 382 n n CAT CBM XDR sing 383 n n CAT CBL XDR sing 384 n n CAT HAT XDR sing 385 n n CAT HATA XDR sing 386 n n CBL NBJ XDR sing 387 n n CBL OAW XDR sing 388 n n CBL HBL XDR sing 389 n n OAW CBN XDR sing 390 n n CBN CAB XDR sing 391 n n CBN NBK XDR sing 392 n n CAB HAB XDR sing 393 n n CAB HABA XDR sing 394 n n CAB HABB XDR sing 395 n n NBK CBI XDR sing 396 n y NBK CBE XDR sing 397 n y CBE CAM XDR sing 398 n y CBE CBB XDR doub 399 n y CAM CAI XDR doub 400 n y CAM HAM XDR sing 401 n n CAI CAF XDR sing 402 n y CAI HAI XDR sing 403 n n CAF HAF XDR sing 404 n n CAJ CAF XDR doub 405 n y CAJ HAJ XDR sing 406 n n CBB CAJ XDR sing 407 n y CBF CBB XDR sing 408 n y CBF CAZ XDR doub 409 n y CBI CBF XDR sing 410 n y CBH CBI XDR doub 411 n y CBH CBG XDR sing 412 n y NBJ CBH XDR sing 413 n y CBD NBJ XDR sing 414 n y CBD CBC XDR sing 415 n y CAL CBD XDR doub 416 n y CAL HAL XDR sing 417 n n CAH CAL XDR sing 418 n y CAH CAG XDR doub 419 n y CAH HAH XDR sing 420 n n CAG CAK XDR sing 421 n y CAG HAG XDR sing 422 n n CAK CBC XDR doub 423 n y CAK HAK XDR sing 424 n n CBC CBG XDR sing 425 n y CBG CBA XDR doub 426 n y CBA CAX XDR sing 427 n n CBA CAZ XDR sing 428 n y CAZ CAS XDR sing 429 n n CAS HAS XDR sing 430 n n NAU CAS XDR doub 431 n n CAX NAU XDR sing 432 n n OAC CAX XDR doub 433 n n C28 H19 XDR sing 434 n n C28 C29 XDR sing 435 n n C28 H20 XDR sing 436 n n C29 H21 XDR sing 437 n n C29 C30 XDR sing 438 n n C29 H22 XDR sing 439 n n C30 C31 XDR sing 440 n n C30 H23 XDR sing 441 n n C30 H24 XDR sing 442 n n C31 H25 XDR sing 443 n n C31 C32 XDR sing 444 n n C31 H26 XDR sing 445 n n C32 H27 XDR sing 446 n n C32 H28 XDR sing 447 n n C32 H29 XDR sing 448 n n # _atom_sites.entry_id 3F69 _atom_sites.fract_transf_matrix[1][1] 0.003361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XDR A 1 309 1 XDR DRG . D 3 SO4 A 1 310 1 SO4 SO4 . E 3 SO4 A 1 311 2 SO4 SO4 . F 2 XDR B 1 309 1 XDR DRG . G 3 SO4 B 1 310 1 SO4 SO4 . H 3 SO4 B 1 311 1 SO4 SO4 . I 4 HOH A 1 312 1 HOH HOH . I 4 HOH A 2 313 1 HOH HOH . I 4 HOH A 3 314 1 HOH HOH . I 4 HOH A 4 315 2 HOH HOH . I 4 HOH A 5 316 1 HOH HOH . I 4 HOH A 6 317 1 HOH HOH . I 4 HOH A 7 318 13 HOH HOH . I 4 HOH A 8 319 5 HOH HOH . I 4 HOH A 9 320 6 HOH HOH . I 4 HOH A 10 321 11 HOH HOH . I 4 HOH A 11 322 12 HOH HOH . I 4 HOH A 12 323 7 HOH HOH . I 4 HOH A 13 324 17 HOH HOH . I 4 HOH A 14 325 18 HOH HOH . I 4 HOH A 15 326 19 HOH HOH . I 4 HOH A 16 327 20 HOH HOH . I 4 HOH A 17 332 3 HOH HOH . J 4 HOH B 1 312 4 HOH HOH . J 4 HOH B 2 314 3 HOH HOH . J 4 HOH B 3 318 8 HOH HOH . J 4 HOH B 4 319 9 HOH HOH . J 4 HOH B 5 320 10 HOH HOH . J 4 HOH B 6 323 14 HOH HOH . J 4 HOH B 7 328 3 HOH HOH . J 4 HOH B 8 329 5 HOH HOH . J 4 HOH B 9 330 6 HOH HOH . J 4 HOH B 10 331 7 HOH HOH . J 4 HOH B 11 333 4 HOH HOH . J 4 HOH B 12 334 5 HOH HOH . J 4 HOH B 13 335 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAR XDR . . . C 2 -42.094 -49.832 3.787 1 20.6 ? CAR XDR 309 A 1 HETATM 2 O OAV XDR . . . C 2 -43.373 -49.131 4.098 1 22.3 ? OAV XDR 309 A 1 HETATM 3 C CAY XDR . . . C 2 -44.048 -48.485 3.1 1 19.35 ? CAY XDR 309 A 1 HETATM 4 O OAD XDR . . . C 2 -43.593 -48.437 1.959 1 17.32 ? OAD XDR 309 A 1 HETATM 5 C CBM XDR . . . C 2 -45.457 -48.002 3.374 1 19.91 ? CBM XDR 309 A 1 HETATM 6 O OAE XDR . . . C 2 -46.173 -47.423 2.3 1 21.71 ? OAE XDR 309 A 1 HETATM 7 C CAT XDR . . . C 2 -46.103 -48.284 4.743 1 19.23 ? CAT XDR 309 A 1 HETATM 8 C CBL XDR . . . C 2 -45.192 -47.742 5.847 1 19.49 ? CBL XDR 309 A 1 HETATM 9 O OAW XDR . . . C 2 -44.427 -46.743 5.198 1 20.33 ? OAW XDR 309 A 1 HETATM 10 C CBN XDR . . . C 2 -45.076 -46.556 3.929 1 20.53 ? CBN XDR 309 A 1 HETATM 11 C CAB XDR . . . C 2 -44.07 -45.777 3.08 1 17.29 ? CAB XDR 309 A 1 HETATM 12 N NBK XDR . . . C 2 -46.224 -45.578 4.16 1 20.24 ? NBK XDR 309 A 1 HETATM 13 C CBE XDR . . . C 2 -46.587 -44.644 3.274 1 20.03 ? CBE XDR 309 A 1 HETATM 14 C CAM XDR . . . C 2 -46.109 -44.332 2.01 1 20.01 ? CAM XDR 309 A 1 HETATM 15 C CAI XDR . . . C 2 -46.694 -43.285 1.294 1 19.98 ? CAI XDR 309 A 1 HETATM 16 C CAF XDR . . . C 2 -47.757 -42.562 1.832 1 20.51 ? CAF XDR 309 A 1 HETATM 17 C CAJ XDR . . . C 2 -48.249 -42.872 3.097 1 20.1 ? CAJ XDR 309 A 1 HETATM 18 C CBB XDR . . . C 2 -47.659 -43.909 3.8 1 20.02 ? CBB XDR 309 A 1 HETATM 19 C CBF XDR . . . C 2 -47.929 -44.434 5.048 1 21.28 ? CBF XDR 309 A 1 HETATM 20 C CBI XDR . . . C 2 -47.009 -45.456 5.225 1 20.56 ? CBI XDR 309 A 1 HETATM 21 C CBH XDR . . . C 2 -47.039 -46.175 6.392 1 20.06 ? CBH XDR 309 A 1 HETATM 22 N NBJ XDR . . . C 2 -46.239 -47.182 6.716 1 20.58 ? NBJ XDR 309 A 1 HETATM 23 C CBD XDR . . . C 2 -46.615 -47.624 7.925 1 21.63 ? CBD XDR 309 A 1 HETATM 24 C CAL XDR . . . C 2 -46.125 -48.662 8.711 1 20.49 ? CAL XDR 309 A 1 HETATM 25 C CAH XDR . . . C 2 -46.718 -48.952 9.932 1 20.64 ? CAH XDR 309 A 1 HETATM 26 C CAG XDR . . . C 2 -47.778 -48.177 10.384 1 21.84 ? CAG XDR 309 A 1 HETATM 27 C CAK XDR . . . C 2 -48.253 -47.101 9.629 1 21.46 ? CAK XDR 309 A 1 HETATM 28 C CBC XDR . . . C 2 -47.689 -46.836 8.386 1 21.21 ? CBC XDR 309 A 1 HETATM 29 C CBG XDR . . . C 2 -47.964 -45.891 7.404 1 19.23 ? CBG XDR 309 A 1 HETATM 30 C CBA XDR . . . C 2 -48.9 -44.866 7.248 1 18.3 ? CBA XDR 309 A 1 HETATM 31 C CAZ XDR . . . C 2 -48.856 -44.145 6.062 1 19.96 ? CAZ XDR 309 A 1 HETATM 32 C CAS XDR . . . C 2 -49.924 -43.065 6.09 1 19.03 ? CAS XDR 309 A 1 HETATM 33 N NAU XDR . . . C 2 -50.553 -43.291 7.393 1 18.84 ? NAU XDR 309 A 1 HETATM 34 C CAX XDR . . . C 2 -49.942 -44.311 8.026 1 20.02 ? CAX XDR 309 A 1 HETATM 35 O OAC XDR . . . C 2 -50.321 -44.7 9.153 1 19.35 ? OAC XDR 309 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #