data_3F69
#
_model_server_result.job_id            '_QQV69jc6mYaoizIPnakCw' 
_model_server_result.datetime_utc      '2024-11-24 18:36:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3f69 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":309}' 
#
_entry.id    3F69 
#
_exptl.entry_id    3F69 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              535.59 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'hexyl (5S,6R,8R)-6-hydroxy-5-methyl-13-oxo-5,6,7,8-tetrahydro-13H-5,8-epoxy-4b,8a,14-triazadibenzo[b,h]cycloocta[1,2,3,4-jkl]c yclopenta[e]-as-indacene-6-carboxylate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3F69 
_cell.length_a            297.557 
_cell.length_b            297.557 
_cell.length_c            297.557 
_cell.Z_PDB               192 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3F69 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        210 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 41 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C VAL 173 B VAL 170 1_555 B N TPO 174 B TPO 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 B C TPO 174 B TPO 171 1_555 B N GLN 175 B GLN 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C32 H29 N3 O5' 
_chem_comp.formula_weight    535.59 
_chem_comp.id                XDR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'hexyl (5S,6R,8R)-6-hydroxy-5-methyl-13-oxo-5,6,7,8-tetrahydro-13H-5,8-epoxy-4b,8a,14-triazadibenzo[b,h]cycloocta[1,2,3,4-jkl]c yclopenta[e]-as-indacene-6-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     KT5720 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAR OAV XDR sing 373 n n 
CAR HAR XDR sing 374 n n 
CAR HARA XDR sing 375 n n 
CAR C28 XDR sing 376 n n 
OAV CAY XDR sing 377 n n 
CAY CBM XDR sing 378 n n 
OAD CAY XDR doub 379 n n 
CBM OAE XDR sing 380 n n 
CBM CBN XDR sing 381 n n 
OAE HOAE XDR sing 382 n n 
CAT CBM XDR sing 383 n n 
CAT CBL XDR sing 384 n n 
CAT HAT XDR sing 385 n n 
CAT HATA XDR sing 386 n n 
CBL NBJ XDR sing 387 n n 
CBL OAW XDR sing 388 n n 
CBL HBL XDR sing 389 n n 
OAW CBN XDR sing 390 n n 
CBN CAB XDR sing 391 n n 
CBN NBK XDR sing 392 n n 
CAB HAB XDR sing 393 n n 
CAB HABA XDR sing 394 n n 
CAB HABB XDR sing 395 n n 
NBK CBI XDR sing 396 n y 
NBK CBE XDR sing 397 n y 
CBE CAM XDR sing 398 n y 
CBE CBB XDR doub 399 n y 
CAM CAI XDR doub 400 n y 
CAM HAM XDR sing 401 n n 
CAI CAF XDR sing 402 n y 
CAI HAI XDR sing 403 n n 
CAF HAF XDR sing 404 n n 
CAJ CAF XDR doub 405 n y 
CAJ HAJ XDR sing 406 n n 
CBB CAJ XDR sing 407 n y 
CBF CBB XDR sing 408 n y 
CBF CAZ XDR doub 409 n y 
CBI CBF XDR sing 410 n y 
CBH CBI XDR doub 411 n y 
CBH CBG XDR sing 412 n y 
NBJ CBH XDR sing 413 n y 
CBD NBJ XDR sing 414 n y 
CBD CBC XDR sing 415 n y 
CAL CBD XDR doub 416 n y 
CAL HAL XDR sing 417 n n 
CAH CAL XDR sing 418 n y 
CAH CAG XDR doub 419 n y 
CAH HAH XDR sing 420 n n 
CAG CAK XDR sing 421 n y 
CAG HAG XDR sing 422 n n 
CAK CBC XDR doub 423 n y 
CAK HAK XDR sing 424 n n 
CBC CBG XDR sing 425 n y 
CBG CBA XDR doub 426 n y 
CBA CAX XDR sing 427 n n 
CBA CAZ XDR sing 428 n y 
CAZ CAS XDR sing 429 n n 
CAS HAS XDR sing 430 n n 
NAU CAS XDR doub 431 n n 
CAX NAU XDR sing 432 n n 
OAC CAX XDR doub 433 n n 
C28 H19 XDR sing 434 n n 
C28 C29 XDR sing 435 n n 
C28 H20 XDR sing 436 n n 
C29 H21 XDR sing 437 n n 
C29 C30 XDR sing 438 n n 
C29 H22 XDR sing 439 n n 
C30 C31 XDR sing 440 n n 
C30 H23 XDR sing 441 n n 
C30 H24 XDR sing 442 n n 
C31 H25 XDR sing 443 n n 
C31 C32 XDR sing 444 n n 
C31 H26 XDR sing 445 n n 
C32 H27 XDR sing 446 n n 
C32 H28 XDR sing 447 n n 
C32 H29 XDR sing 448 n n 
#
_atom_sites.entry_id                     3F69 
_atom_sites.fract_transf_matrix[1][1]    0.003361 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003361 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003361 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XDR A 1 309 1 XDR DRG . 
D 3 SO4 A 1 310 1 SO4 SO4 . 
E 3 SO4 A 1 311 2 SO4 SO4 . 
F 2 XDR B 1 309 1 XDR DRG . 
G 3 SO4 B 1 310 1 SO4 SO4 . 
H 3 SO4 B 1 311 1 SO4 SO4 . 
I 4 HOH A 1 312 1 HOH HOH . 
I 4 HOH A 2 313 1 HOH HOH . 
I 4 HOH A 3 314 1 HOH HOH . 
I 4 HOH A 4 315 2 HOH HOH . 
I 4 HOH A 5 316 1 HOH HOH . 
I 4 HOH A 6 317 1 HOH HOH . 
I 4 HOH A 7 318 13 HOH HOH . 
I 4 HOH A 8 319 5 HOH HOH . 
I 4 HOH A 9 320 6 HOH HOH . 
I 4 HOH A 10 321 11 HOH HOH . 
I 4 HOH A 11 322 12 HOH HOH . 
I 4 HOH A 12 323 7 HOH HOH . 
I 4 HOH A 13 324 17 HOH HOH . 
I 4 HOH A 14 325 18 HOH HOH . 
I 4 HOH A 15 326 19 HOH HOH . 
I 4 HOH A 16 327 20 HOH HOH . 
I 4 HOH A 17 332 3 HOH HOH . 
J 4 HOH B 1 312 4 HOH HOH . 
J 4 HOH B 2 314 3 HOH HOH . 
J 4 HOH B 3 318 8 HOH HOH . 
J 4 HOH B 4 319 9 HOH HOH . 
J 4 HOH B 5 320 10 HOH HOH . 
J 4 HOH B 6 323 14 HOH HOH . 
J 4 HOH B 7 328 3 HOH HOH . 
J 4 HOH B 8 329 5 HOH HOH . 
J 4 HOH B 9 330 6 HOH HOH . 
J 4 HOH B 10 331 7 HOH HOH . 
J 4 HOH B 11 333 4 HOH HOH . 
J 4 HOH B 12 334 5 HOH HOH . 
J 4 HOH B 13 335 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAR XDR . . . F 2 -20.17 -49.045 -12.551 1 13.12 ? CAR XDR 309 B 1 
HETATM 2 O OAV XDR . . . F 2 -19.087 -49.702 -11.764 1 14.3 ? OAV XDR 309 B 1 
HETATM 3 C CAY XDR . . . F 2 -19.23 -51.011 -11.389 1 14.46 ? CAY XDR 309 B 1 
HETATM 4 O OAD XDR . . . F 2 -20.291 -51.603 -11.531 1 13.31 ? OAD XDR 309 B 1 
HETATM 5 C CBM XDR . . . F 2 -18.051 -51.833 -10.953 1 16.57 ? CBM XDR 309 B 1 
HETATM 6 O OAE XDR . . . F 2 -18.306 -53.126 -10.45 1 16.57 ? OAE XDR 309 B 1 
HETATM 7 C CAT XDR . . . F 2 -16.656 -51.302 -11.254 1 16.65 ? CAT XDR 309 B 1 
HETATM 8 C CBL XDR . . . F 2 -16.445 -49.991 -10.569 1 17.47 ? CBL XDR 309 B 1 
HETATM 9 O OAW XDR . . . F 2 -17.36 -49.966 -9.503 1 16.86 ? OAW XDR 309 B 1 
HETATM 10 C CBN XDR . . . F 2 -17.899 -51.269 -9.458 1 17.57 ? CBN XDR 309 B 1 
HETATM 11 C CAB XDR . . . F 2 -19.194 -51.063 -8.695 1 15.95 ? CAB XDR 309 B 1 
HETATM 12 N NBK XDR . . . F 2 -17.002 -51.992 -8.489 1 19.46 ? NBK XDR 309 B 1 
HETATM 13 C CBE XDR . . . F 2 -17.436 -52.885 -7.597 1 20.57 ? CBE XDR 309 B 1 
HETATM 14 C CAM XDR . . . F 2 -18.703 -53.396 -7.332 1 21.33 ? CAM XDR 309 B 1 
HETATM 15 C CAI XDR . . . F 2 -18.868 -54.346 -6.321 1 22.63 ? CAI XDR 309 B 1 
HETATM 16 C CAF XDR . . . F 2 -17.777 -54.786 -5.564 1 22.01 ? CAF XDR 309 B 1 
HETATM 17 C CAJ XDR . . . F 2 -16.509 -54.272 -5.831 1 22.29 ? CAJ XDR 309 B 1 
HETATM 18 C CBB XDR . . . F 2 -16.343 -53.326 -6.844 1 20.2 ? CBB XDR 309 B 1 
HETATM 19 C CBF XDR . . . F 2 -15.235 -52.648 -7.305 1 19.55 ? CBF XDR 309 B 1 
HETATM 20 C CBI XDR . . . F 2 -15.697 -51.833 -8.315 1 19.19 ? CBI XDR 309 B 1 
HETATM 21 C CBH XDR . . . F 2 -14.817 -51.036 -9.008 1 18.29 ? CBH XDR 309 B 1 
HETATM 22 N NBJ XDR . . . F 2 -15.103 -50.199 -9.991 1 18.71 ? NBJ XDR 309 B 1 
HETATM 23 C CBD XDR . . . F 2 -13.966 -49.622 -10.394 1 18.84 ? CBD XDR 309 B 1 
HETATM 24 C CAL XDR . . . F 2 -13.732 -48.696 -11.407 1 16.79 ? CAL XDR 309 B 1 
HETATM 25 C CAH XDR . . . F 2 -12.421 -48.288 -11.642 1 17.79 ? CAH XDR 309 B 1 
HETATM 26 C CAG XDR . . . F 2 -11.369 -48.76 -10.854 1 18.07 ? CAG XDR 309 B 1 
HETATM 27 C CAK XDR . . . F 2 -11.614 -49.657 -9.809 1 18.31 ? CAK XDR 309 B 1 
HETATM 28 C CBC XDR . . . F 2 -12.911 -50.106 -9.595 1 18.11 ? CBC XDR 309 B 1 
HETATM 29 C CBG XDR . . . F 2 -13.463 -51.004 -8.702 1 17.77 ? CBG XDR 309 B 1 
HETATM 30 C CBA XDR . . . F 2 -12.974 -51.814 -7.681 1 18.76 ? CBA XDR 309 B 1 
HETATM 31 C CAZ XDR . . . F 2 -13.872 -52.627 -6.992 1 19.5 ? CAZ XDR 309 B 1 
HETATM 32 C CAS XDR . . . F 2 -13.101 -53.414 -5.947 1 17.64 ? CAS XDR 309 B 1 
HETATM 33 N NAU XDR . . . F 2 -11.741 -52.905 -6.122 1 17.51 ? NAU XDR 309 B 1 
HETATM 34 C CAX XDR . . . F 2 -11.712 -52.015 -7.12 1 19.61 ? CAX XDR 309 B 1 
HETATM 35 O OAC XDR . . . F 2 -10.696 -51.375 -7.438 1 20.76 ? OAC XDR 309 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           35 
#