data_3F70 # _model_server_result.job_id HIMBU2bwRC7WieSa_v7UDg _model_server_result.datetime_utc '2024-10-10 06:29:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f70 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":20}' # _entry.id 3F70 # _exptl.entry_id 3F70 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 160.214 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-METHYL-LYSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F70 _cell.length_a 55.59 _cell.length_b 55.489 _cell.length_c 324.101 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F70 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C7 H16 N2 O2' _chem_comp.formula_weight 160.214 _chem_comp.id MLZ _chem_comp.mon_nstd_flag n _chem_comp.name N-METHYL-LYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MLZ sing 237 n n N H MLZ sing 238 n n N H2 MLZ sing 239 n n CA CB MLZ sing 240 n n CA C MLZ sing 241 n n CA HA MLZ sing 242 n n CB CG MLZ sing 243 n n CB HB2 MLZ sing 244 n n CB HB3 MLZ sing 245 n n CG CD MLZ sing 246 n n CG HG2 MLZ sing 247 n n CG HG3 MLZ sing 248 n n CD CE MLZ sing 249 n n CD HD2 MLZ sing 250 n n CD HD3 MLZ sing 251 n n CE NZ MLZ sing 252 n n CE HE2 MLZ sing 253 n n CE HE3 MLZ sing 254 n n NZ CM MLZ sing 255 n n NZ HZ MLZ sing 256 n n CM HCM1 MLZ sing 257 n n CM HCM2 MLZ sing 258 n n CM HCM3 MLZ sing 259 n n C O MLZ doub 260 n n C OXT MLZ sing 261 n n OXT HXT MLZ sing 262 n n # _atom_sites.entry_id 3F70 _atom_sites.fract_transf_matrix[1][1] 0.017989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLZ A 1 20 20 MLZ MLZ . D 2 MLZ B 1 20 20 MLZ MLZ . E 3 HOH A 1 1 1 HOH HOH . E 3 HOH A 2 2 2 HOH HOH . E 3 HOH A 3 4 4 HOH HOH . E 3 HOH A 4 7 7 HOH HOH . E 3 HOH A 5 11 11 HOH HOH . E 3 HOH A 6 13 13 HOH HOH . E 3 HOH A 7 14 14 HOH HOH . E 3 HOH A 8 17 17 HOH HOH . E 3 HOH A 9 18 18 HOH HOH . E 3 HOH A 10 19 19 HOH HOH . E 3 HOH A 11 21 21 HOH HOH . E 3 HOH A 12 23 23 HOH HOH . E 3 HOH A 13 24 24 HOH HOH . E 3 HOH A 14 26 26 HOH HOH . E 3 HOH A 15 29 29 HOH HOH . E 3 HOH A 16 32 32 HOH HOH . E 3 HOH A 17 33 33 HOH HOH . E 3 HOH A 18 35 35 HOH HOH . E 3 HOH A 19 37 37 HOH HOH . E 3 HOH A 20 42 42 HOH HOH . E 3 HOH A 21 48 48 HOH HOH . E 3 HOH A 22 49 49 HOH HOH . E 3 HOH A 23 50 50 HOH HOH . E 3 HOH A 24 51 51 HOH HOH . E 3 HOH A 25 62 62 HOH HOH . E 3 HOH A 26 63 63 HOH HOH . E 3 HOH A 27 64 64 HOH HOH . E 3 HOH A 28 66 66 HOH HOH . E 3 HOH A 29 67 67 HOH HOH . E 3 HOH A 30 70 70 HOH HOH . E 3 HOH A 31 78 78 HOH HOH . E 3 HOH A 32 82 82 HOH HOH . E 3 HOH A 33 83 83 HOH HOH . E 3 HOH A 34 89 89 HOH HOH . E 3 HOH A 35 91 91 HOH HOH . E 3 HOH A 36 94 94 HOH HOH . E 3 HOH A 37 97 97 HOH HOH . E 3 HOH A 38 98 98 HOH HOH . E 3 HOH A 39 99 99 HOH HOH . E 3 HOH A 40 100 100 HOH HOH . E 3 HOH A 41 101 101 HOH HOH . E 3 HOH A 42 103 103 HOH HOH . E 3 HOH A 43 105 105 HOH HOH . E 3 HOH A 44 108 108 HOH HOH . E 3 HOH A 45 111 111 HOH HOH . E 3 HOH A 46 113 113 HOH HOH . E 3 HOH A 47 115 115 HOH HOH . E 3 HOH A 48 117 117 HOH HOH . E 3 HOH A 49 121 121 HOH HOH . E 3 HOH A 50 123 123 HOH HOH . E 3 HOH A 51 125 125 HOH HOH . E 3 HOH A 52 126 126 HOH HOH . E 3 HOH A 53 129 129 HOH HOH . E 3 HOH A 54 134 134 HOH HOH . E 3 HOH A 55 135 135 HOH HOH . E 3 HOH A 56 137 137 HOH HOH . E 3 HOH A 57 141 141 HOH HOH . E 3 HOH A 58 143 143 HOH HOH . E 3 HOH A 59 146 146 HOH HOH . E 3 HOH A 60 148 148 HOH HOH . E 3 HOH A 61 149 149 HOH HOH . E 3 HOH A 62 157 157 HOH HOH . E 3 HOH A 63 158 158 HOH HOH . E 3 HOH A 64 159 159 HOH HOH . E 3 HOH A 65 163 163 HOH HOH . E 3 HOH A 66 165 165 HOH HOH . E 3 HOH A 67 168 168 HOH HOH . E 3 HOH A 68 626 170 HOH HOH . E 3 HOH A 69 628 172 HOH HOH . E 3 HOH A 70 629 173 HOH HOH . E 3 HOH A 71 630 174 HOH HOH . E 3 HOH A 72 634 178 HOH HOH . E 3 HOH A 73 640 184 HOH HOH . E 3 HOH A 74 641 185 HOH HOH . E 3 HOH A 75 642 186 HOH HOH . E 3 HOH A 76 651 195 HOH HOH . E 3 HOH A 77 652 196 HOH HOH . E 3 HOH A 78 656 200 HOH HOH . E 3 HOH A 79 657 201 HOH HOH . E 3 HOH A 80 660 204 HOH HOH . E 3 HOH A 81 661 205 HOH HOH . E 3 HOH A 82 662 206 HOH HOH . E 3 HOH A 83 663 207 HOH HOH . E 3 HOH A 84 667 211 HOH HOH . E 3 HOH A 85 671 215 HOH HOH . E 3 HOH A 86 672 216 HOH HOH . E 3 HOH A 87 674 218 HOH HOH . E 3 HOH A 88 676 220 HOH HOH . E 3 HOH A 89 677 221 HOH HOH . E 3 HOH A 90 682 226 HOH HOH . E 3 HOH A 91 685 229 HOH HOH . E 3 HOH A 92 690 235 HOH HOH . E 3 HOH A 93 691 236 HOH HOH . E 3 HOH A 94 692 237 HOH HOH . E 3 HOH A 95 693 238 HOH HOH . E 3 HOH A 96 694 239 HOH HOH . E 3 HOH A 97 695 240 HOH HOH . E 3 HOH A 98 697 242 HOH HOH . E 3 HOH A 99 700 246 HOH HOH . E 3 HOH A 100 703 249 HOH HOH . E 3 HOH A 101 705 252 HOH HOH . E 3 HOH A 102 706 253 HOH HOH . E 3 HOH A 103 707 255 HOH HOH . E 3 HOH A 104 708 257 HOH HOH . E 3 HOH A 105 709 258 HOH HOH . E 3 HOH A 106 711 260 HOH HOH . E 3 HOH A 107 714 264 HOH HOH . E 3 HOH A 108 717 267 HOH HOH . E 3 HOH A 109 719 270 HOH HOH . E 3 HOH A 110 724 276 HOH HOH . E 3 HOH A 111 725 278 HOH HOH . E 3 HOH A 112 732 285 HOH HOH . E 3 HOH A 113 734 287 HOH HOH . E 3 HOH A 114 737 292 HOH HOH . E 3 HOH A 115 738 293 HOH HOH . E 3 HOH A 116 739 295 HOH HOH . E 3 HOH A 117 742 299 HOH HOH . E 3 HOH A 118 743 300 HOH HOH . E 3 HOH A 119 746 303 HOH HOH . F 3 HOH B 1 3 3 HOH HOH . F 3 HOH B 2 5 5 HOH HOH . F 3 HOH B 3 6 6 HOH HOH . F 3 HOH B 4 8 8 HOH HOH . F 3 HOH B 5 9 9 HOH HOH . F 3 HOH B 6 10 10 HOH HOH . F 3 HOH B 7 12 12 HOH HOH . F 3 HOH B 8 15 15 HOH HOH . F 3 HOH B 9 16 16 HOH HOH . F 3 HOH B 10 22 22 HOH HOH . F 3 HOH B 11 25 25 HOH HOH . F 3 HOH B 12 27 27 HOH HOH . F 3 HOH B 13 28 28 HOH HOH . F 3 HOH B 14 30 30 HOH HOH . F 3 HOH B 15 31 31 HOH HOH . F 3 HOH B 16 34 34 HOH HOH . F 3 HOH B 17 36 36 HOH HOH . F 3 HOH B 18 38 38 HOH HOH . F 3 HOH B 19 39 39 HOH HOH . F 3 HOH B 20 40 40 HOH HOH . F 3 HOH B 21 41 41 HOH HOH . F 3 HOH B 22 43 43 HOH HOH . F 3 HOH B 23 44 44 HOH HOH . F 3 HOH B 24 45 45 HOH HOH . F 3 HOH B 25 46 46 HOH HOH . F 3 HOH B 26 47 47 HOH HOH . F 3 HOH B 27 52 52 HOH HOH . F 3 HOH B 28 53 53 HOH HOH . F 3 HOH B 29 54 54 HOH HOH . F 3 HOH B 30 55 55 HOH HOH . F 3 HOH B 31 56 56 HOH HOH . F 3 HOH B 32 57 57 HOH HOH . F 3 HOH B 33 58 58 HOH HOH . F 3 HOH B 34 59 59 HOH HOH . F 3 HOH B 35 60 60 HOH HOH . F 3 HOH B 36 61 61 HOH HOH . F 3 HOH B 37 65 65 HOH HOH . F 3 HOH B 38 68 68 HOH HOH . F 3 HOH B 39 69 69 HOH HOH . F 3 HOH B 40 71 71 HOH HOH . F 3 HOH B 41 72 72 HOH HOH . F 3 HOH B 42 73 73 HOH HOH . F 3 HOH B 43 74 74 HOH HOH . F 3 HOH B 44 75 75 HOH HOH . F 3 HOH B 45 76 76 HOH HOH . F 3 HOH B 46 77 77 HOH HOH . F 3 HOH B 47 79 79 HOH HOH . F 3 HOH B 48 80 80 HOH HOH . F 3 HOH B 49 81 81 HOH HOH . F 3 HOH B 50 84 84 HOH HOH . F 3 HOH B 51 85 85 HOH HOH . F 3 HOH B 52 86 86 HOH HOH . F 3 HOH B 53 87 87 HOH HOH . F 3 HOH B 54 88 88 HOH HOH . F 3 HOH B 55 90 90 HOH HOH . F 3 HOH B 56 92 92 HOH HOH . F 3 HOH B 57 93 93 HOH HOH . F 3 HOH B 58 95 95 HOH HOH . F 3 HOH B 59 96 96 HOH HOH . F 3 HOH B 60 102 102 HOH HOH . F 3 HOH B 61 104 104 HOH HOH . F 3 HOH B 62 106 106 HOH HOH . F 3 HOH B 63 107 107 HOH HOH . F 3 HOH B 64 109 109 HOH HOH . F 3 HOH B 65 110 110 HOH HOH . F 3 HOH B 66 112 112 HOH HOH . F 3 HOH B 67 114 114 HOH HOH . F 3 HOH B 68 116 116 HOH HOH . F 3 HOH B 69 118 118 HOH HOH . F 3 HOH B 70 119 119 HOH HOH . F 3 HOH B 71 120 120 HOH HOH . F 3 HOH B 72 122 122 HOH HOH . F 3 HOH B 73 124 124 HOH HOH . F 3 HOH B 74 127 127 HOH HOH . F 3 HOH B 75 128 128 HOH HOH . F 3 HOH B 76 130 130 HOH HOH . F 3 HOH B 77 131 131 HOH HOH . F 3 HOH B 78 132 132 HOH HOH . F 3 HOH B 79 133 133 HOH HOH . F 3 HOH B 80 136 136 HOH HOH . F 3 HOH B 81 138 138 HOH HOH . F 3 HOH B 82 139 139 HOH HOH . F 3 HOH B 83 140 140 HOH HOH . F 3 HOH B 84 142 142 HOH HOH . F 3 HOH B 85 144 144 HOH HOH . F 3 HOH B 86 145 145 HOH HOH . F 3 HOH B 87 147 147 HOH HOH . F 3 HOH B 88 150 150 HOH HOH . F 3 HOH B 89 151 151 HOH HOH . F 3 HOH B 90 152 152 HOH HOH . F 3 HOH B 91 153 153 HOH HOH . F 3 HOH B 92 154 154 HOH HOH . F 3 HOH B 93 155 155 HOH HOH . F 3 HOH B 94 156 156 HOH HOH . F 3 HOH B 95 160 160 HOH HOH . F 3 HOH B 96 161 161 HOH HOH . F 3 HOH B 97 162 162 HOH HOH . F 3 HOH B 98 164 164 HOH HOH . F 3 HOH B 99 166 166 HOH HOH . F 3 HOH B 100 167 167 HOH HOH . F 3 HOH B 101 169 169 HOH HOH . F 3 HOH B 102 626 20 HOH HOH . F 3 HOH B 103 627 171 HOH HOH . F 3 HOH B 104 631 175 HOH HOH . F 3 HOH B 105 632 176 HOH HOH . F 3 HOH B 106 633 177 HOH HOH . F 3 HOH B 107 635 179 HOH HOH . F 3 HOH B 108 636 180 HOH HOH . F 3 HOH B 109 637 181 HOH HOH . F 3 HOH B 110 638 182 HOH HOH . F 3 HOH B 111 639 183 HOH HOH . F 3 HOH B 112 643 187 HOH HOH . F 3 HOH B 113 644 188 HOH HOH . F 3 HOH B 114 645 189 HOH HOH . F 3 HOH B 115 646 190 HOH HOH . F 3 HOH B 116 647 191 HOH HOH . F 3 HOH B 117 648 192 HOH HOH . F 3 HOH B 118 649 193 HOH HOH . F 3 HOH B 119 650 194 HOH HOH . F 3 HOH B 120 653 197 HOH HOH . F 3 HOH B 121 654 198 HOH HOH . F 3 HOH B 122 655 199 HOH HOH . F 3 HOH B 123 658 202 HOH HOH . F 3 HOH B 124 659 203 HOH HOH . F 3 HOH B 125 664 208 HOH HOH . F 3 HOH B 126 665 209 HOH HOH . F 3 HOH B 127 666 210 HOH HOH . F 3 HOH B 128 668 212 HOH HOH . F 3 HOH B 129 669 213 HOH HOH . F 3 HOH B 130 670 214 HOH HOH . F 3 HOH B 131 673 217 HOH HOH . F 3 HOH B 132 675 219 HOH HOH . F 3 HOH B 133 678 222 HOH HOH . F 3 HOH B 134 679 223 HOH HOH . F 3 HOH B 135 680 224 HOH HOH . F 3 HOH B 136 681 225 HOH HOH . F 3 HOH B 137 683 227 HOH HOH . F 3 HOH B 138 684 228 HOH HOH . F 3 HOH B 139 686 230 HOH HOH . F 3 HOH B 140 687 231 HOH HOH . F 3 HOH B 141 688 233 HOH HOH . F 3 HOH B 142 689 234 HOH HOH . F 3 HOH B 143 696 241 HOH HOH . F 3 HOH B 144 698 244 HOH HOH . F 3 HOH B 145 699 245 HOH HOH . F 3 HOH B 146 701 247 HOH HOH . F 3 HOH B 147 702 248 HOH HOH . F 3 HOH B 148 704 250 HOH HOH . F 3 HOH B 149 710 259 HOH HOH . F 3 HOH B 150 712 261 HOH HOH . F 3 HOH B 151 713 263 HOH HOH . F 3 HOH B 152 715 265 HOH HOH . F 3 HOH B 153 716 266 HOH HOH . F 3 HOH B 154 718 268 HOH HOH . F 3 HOH B 155 720 271 HOH HOH . F 3 HOH B 156 721 272 HOH HOH . F 3 HOH B 157 722 273 HOH HOH . F 3 HOH B 158 723 274 HOH HOH . F 3 HOH B 159 726 279 HOH HOH . F 3 HOH B 160 727 280 HOH HOH . F 3 HOH B 161 728 281 HOH HOH . F 3 HOH B 162 729 282 HOH HOH . F 3 HOH B 163 730 283 HOH HOH . F 3 HOH B 164 731 284 HOH HOH . F 3 HOH B 165 733 286 HOH HOH . F 3 HOH B 166 735 290 HOH HOH . F 3 HOH B 167 736 291 HOH HOH . F 3 HOH B 168 740 296 HOH HOH . F 3 HOH B 169 741 298 HOH HOH . F 3 HOH B 170 744 301 HOH HOH . F 3 HOH B 171 745 302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MLZ . . . D 2 -15.93 -26.094 -21.906 1 68.3 ? N MLZ 20 B 1 HETATM 2 C CA MLZ . . . D 2 -15.069 -25.502 -22.962 1 67.6 ? CA MLZ 20 B 1 HETATM 3 C CB MLZ . . . D 2 -13.686 -25.138 -22.365 1 66.46 ? CB MLZ 20 B 1 HETATM 4 C CG MLZ . . . D 2 -12.494 -24.947 -23.333 1 60.74 ? CG MLZ 20 B 1 HETATM 5 C CD MLZ . . . D 2 -11.398 -23.994 -22.821 1 49.93 ? CD MLZ 20 B 1 HETATM 6 C CE MLZ . . . D 2 -10.173 -24.043 -23.745 1 47.34 ? CE MLZ 20 B 1 HETATM 7 N NZ MLZ . . . D 2 -9.389 -22.853 -23.789 1 38.41 ? NZ MLZ 20 B 1 HETATM 8 C CM MLZ . . . D 2 -8.107 -22.862 -24.491 1 39.25 ? CM MLZ 20 B 1 HETATM 9 C C MLZ . . . D 2 -15.092 -26.423 -24.178 1 69.29 ? C MLZ 20 B 1 HETATM 10 O O MLZ . . . D 2 -15.949 -26.264 -25.111 1 71.46 ? O MLZ 20 B 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #