data_3F73
#
_model_server_result.job_id            '_b0T9YarAvcqTyp1kkvX9g' 
_model_server_result.datetime_utc      '2024-11-15 20:34:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3f73 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":23}' 
#
_entry.id    3F73 
#
_exptl.entry_id    3F73 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.3 
_cell.angle_gamma         90 
_cell.entry_id            3F73 
_cell.length_a            61.162 
_cell.length_b            120.527 
_cell.length_c            109.085 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3F73 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 software_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G,H,I,K 1 1 
B,E,F,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 C N1 DG 2 C DG 2 1_555 D N3 C 18 H C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 C N2 DG 2 C DG 2 1_555 D O2 C 18 H C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 C O6 DG 2 C DG 2 1_555 D N4 C 18 H C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 C N1 DA 3 C DA 3 1_555 D N3 U 17 H U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 C N6 DA 3 C DA 3 1_555 D O4 U 17 H U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 C N1 DG 4 C DG 4 1_555 D N3 C 16 H C 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 C N2 DG 4 C DG 4 1_555 D O2 C 16 H C 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 C O6 DG 4 C DG 4 1_555 D N4 C 16 H C 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 C N1 DG 5 C DG 5 1_555 D N3 C 15 H C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 C N2 DG 5 C DG 5 1_555 D O2 C 15 H C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 C O6 DG 5 C DG 5 1_555 D N4 C 15 H C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 C N3 DT 6 C DT 6 1_555 D N1 A 14 H A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 C O4 DT 6 C DT 6 1_555 D N6 A 14 H A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 C N1 DA 7 C DA 7 1_555 D N3 U 13 H U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 C N6 DA 7 C DA 7 1_555 D O4 U 13 H U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 C N1 DG 8 C DG 8 1_555 D N3 C 12 H C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 C N2 DG 8 C DG 8 1_555 D O2 C 12 H C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 C O6 DG 8 C DG 8 1_555 D N4 C 12 H C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 C N3 DT 9 C DT 9 1_555 D N1 A 11 H A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 C O4 DT 9 C DT 9 1_555 D N6 A 11 H A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DA-A MISPAIR' hydrog21 C N6 DA 10 C DA 10 1_555 D N1 A 11 H A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 E N1 DG 2 X DG 2 1_555 F N3 C 18 Y C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 E N2 DG 2 X DG 2 1_555 F O2 C 18 Y C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 E O6 DG 2 X DG 2 1_555 F N4 C 18 Y C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 E N1 DA 3 X DA 3 1_555 F N3 U 17 Y U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 E N6 DA 3 X DA 3 1_555 F O4 U 17 Y U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 E N1 DG 4 X DG 4 1_555 F N3 C 16 Y C 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 E N2 DG 4 X DG 4 1_555 F O2 C 16 Y C 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 E O6 DG 4 X DG 4 1_555 F N4 C 16 Y C 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 E N1 DG 5 X DG 5 1_555 F N3 C 15 Y C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 E N2 DG 5 X DG 5 1_555 F O2 C 15 Y C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 E O6 DG 5 X DG 5 1_555 F N4 C 15 Y C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog33 E N3 DT 6 X DT 6 1_555 F N1 A 14 Y A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog34 E O4 DT 6 X DT 6 1_555 F N6 A 14 Y A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog35 E N1 DA 7 X DA 7 1_555 F N3 U 13 Y U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog36 E N6 DA 7 X DA 7 1_555 F O4 U 13 Y U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog37 E N1 DG 8 X DG 8 1_555 F N3 C 12 Y C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog38 E N2 DG 8 X DG 8 1_555 F O2 C 12 Y C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog39 E O6 DG 8 X DG 8 1_555 F N4 C 12 Y C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog40 E N3 DT 9 X DT 9 1_555 F N1 A 11 Y A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog41 E O4 DT 9 X DT 9 1_555 F N6 A 11 Y A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DA-A MISPAIR' hydrog42 E N6 DA 10 X DA 10 1_555 F N1 A 11 Y A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 489 n n 
P O2 PO4 sing 490 n n 
P O3 PO4 sing 491 n n 
P O4 PO4 sing 492 n n 
#
_atom_sites.entry_id                     3F73 
_atom_sites.fract_transf_matrix[1][1]    0.01635 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004473 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008297 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 MG A 1 686 686 MG MG . 
H 4 MG C 1 22 22 MG MG . 
I 5 PO4 C 1 23 23 PO4 PO4 . 
J 4 MG X 1 22 22 MG MG . 
K 6 HOH A 1 687 687 HOH HOH . 
K 6 HOH A 2 688 688 HOH HOH . 
K 6 HOH A 3 689 689 HOH HOH . 
K 6 HOH A 4 690 690 HOH HOH . 
K 6 HOH A 5 691 691 HOH HOH . 
K 6 HOH A 6 692 692 HOH HOH . 
K 6 HOH A 7 693 693 HOH HOH . 
K 6 HOH A 8 694 694 HOH HOH . 
L 6 HOH B 1 686 686 HOH HOH . 
L 6 HOH B 2 687 687 HOH HOH . 
L 6 HOH B 3 688 688 HOH HOH . 
L 6 HOH B 4 689 689 HOH HOH . 
L 6 HOH B 5 690 690 HOH HOH . 
L 6 HOH B 6 691 691 HOH HOH . 
L 6 HOH B 7 692 692 HOH HOH . 
L 6 HOH B 8 693 693 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . I 5 31.497 20.385 37.959 1 125.74 ? P PO4 23 C 1 
HETATM 2 O O1 PO4 . . . I 5 32.713 20.925 37.296 0.5 125.8 ? O1 PO4 23 C 1 
HETATM 3 O O2 PO4 . . . I 5 30.288 20.938 37.301 0.5 125.62 ? O2 PO4 23 C 1 
HETATM 4 O O3 PO4 . . . I 5 31.492 18.905 37.846 0.5 125.97 ? O3 PO4 23 C 1 
HETATM 5 O O4 PO4 . . . I 5 31.499 20.773 39.392 0.5 125.82 ? O4 PO4 23 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#