data_3F8C # _model_server_result.job_id 5DB7lEkNEszM4FmBVArrGg _model_server_result.datetime_utc '2025-06-21 05:44:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":127}' # _entry.id 3F8C # _exptl.entry_id 3F8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 452.551 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F8C _cell.length_a 34.93 _cell.length_b 34.93 _cell.length_c 197 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H28 N6 O' _chem_comp.formula_weight 452.551 _chem_comp.id HT1 _chem_comp.mon_nstd_flag . _chem_comp.name "2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HOECHST 33342' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HT1 sing 139 n n C1 C2 HT1 doub 140 n y C1 C6 HT1 sing 141 n y O1 C26 HT1 sing 142 n n C2 C3 HT1 sing 143 n y C2 H2 HT1 sing 144 n n C3 C4 HT1 doub 145 n y C3 H3 HT1 sing 146 n n C4 C5 HT1 sing 147 n y C4 C7 HT1 sing 148 n y C5 C6 HT1 doub 149 n y C5 H5 HT1 sing 150 n n C6 H6 HT1 sing 151 n n C7 N1 HT1 sing 152 n y C7 N2 HT1 doub 153 n y N1 C8 HT1 sing 154 n y N1 HN1 HT1 sing 155 n n C8 C9 HT1 doub 156 n y C8 C13 HT1 sing 157 n y C9 N2 HT1 sing 158 n y C9 C10 HT1 sing 159 n y C10 C11 HT1 doub 160 n y C10 H10 HT1 sing 161 n n C11 C12 HT1 sing 162 n y C11 H11 HT1 sing 163 n n C12 C13 HT1 doub 164 n y C12 C14 HT1 sing 165 n y C13 H13 HT1 sing 166 n n C14 N3 HT1 sing 167 n y C14 N4 HT1 doub 168 n y N3 C15 HT1 sing 169 n y N3 HN3 HT1 sing 170 n n C15 C16 HT1 doub 171 n y C15 C20 HT1 sing 172 n y C16 N4 HT1 sing 173 n y C16 C17 HT1 sing 174 n y C17 C18 HT1 doub 175 n y C17 H17 HT1 sing 176 n n C18 C19 HT1 sing 177 n y C18 H18 HT1 sing 178 n n C19 C20 HT1 doub 179 n y C19 N5 HT1 sing 180 n n C20 H20 HT1 sing 181 n n N5 C21 HT1 sing 182 n n N5 C24 HT1 sing 183 n n C21 C22 HT1 sing 184 n n C21 H211 HT1 sing 185 n n C21 H212 HT1 sing 186 n n C22 N6 HT1 sing 187 n n C22 H221 HT1 sing 188 n n C22 H222 HT1 sing 189 n n N6 C23 HT1 sing 190 n n N6 C25 HT1 sing 191 n n C23 C24 HT1 sing 192 n n C23 H231 HT1 sing 193 n n C23 H232 HT1 sing 194 n n C24 H241 HT1 sing 195 n n C24 H242 HT1 sing 196 n n C25 H251 HT1 sing 197 n n C25 H252 HT1 sing 198 n n C25 H253 HT1 sing 199 n n C26 C27 HT1 sing 200 n n C26 H261 HT1 sing 201 n n C26 H262 HT1 sing 202 n n C27 H271 HT1 sing 203 n n C27 H272 HT1 sing 204 n n C27 H273 HT1 sing 205 n n # _atom_sites.entry_id 3F8C _atom_sites.fract_transf_matrix[1][1] 0.028631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HT1 A 1 127 25 HT1 HT1 . C 3 HOH A 1 128 1 HOH HOH . C 3 HOH A 2 129 2 HOH HOH . C 3 HOH A 3 130 3 HOH HOH . C 3 HOH A 4 131 4 HOH HOH . C 3 HOH A 5 132 5 HOH HOH . C 3 HOH A 6 133 6 HOH HOH . C 3 HOH A 7 134 7 HOH HOH . C 3 HOH A 8 135 8 HOH HOH . C 3 HOH A 9 136 10 HOH HOH . C 3 HOH A 10 137 11 HOH HOH . C 3 HOH A 11 138 12 HOH HOH . C 3 HOH A 12 139 13 HOH HOH . C 3 HOH A 13 140 14 HOH HOH . C 3 HOH A 14 141 15 HOH HOH . C 3 HOH A 15 142 17 HOH HOH . C 3 HOH A 16 143 18 HOH HOH . C 3 HOH A 17 144 19 HOH HOH . C 3 HOH A 18 145 20 HOH HOH . C 3 HOH A 19 146 22 HOH HOH . C 3 HOH A 20 147 27 HOH HOH . C 3 HOH A 21 148 28 HOH HOH . C 3 HOH A 22 149 29 HOH HOH . C 3 HOH A 23 150 36 HOH HOH . C 3 HOH A 24 151 42 HOH HOH . C 3 HOH A 25 152 43 HOH HOH . C 3 HOH A 26 153 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HT1 . . . B 2 0.484 -5.548 6.557 0.5 31.58 ? C1 HT1 127 A 1 HETATM 2 O O1 HT1 . . . B 2 0.722 -6.342 7.643 0.5 34.75 ? O1 HT1 127 A 1 HETATM 3 C C2 HT1 . . . B 2 -0.465 -5.934 5.617 0.5 32.86 ? C2 HT1 127 A 1 HETATM 4 C C3 HT1 . . . B 2 -0.722 -5.137 4.503 0.5 31.3 ? C3 HT1 127 A 1 HETATM 5 C C4 HT1 . . . B 2 -0.026 -3.947 4.327 0.5 31.67 ? C4 HT1 127 A 1 HETATM 6 C C5 HT1 . . . B 2 0.93 -3.547 5.276 0.5 31.21 ? C5 HT1 127 A 1 HETATM 7 C C6 HT1 . . . B 2 1.183 -4.35 6.393 0.5 30.37 ? C6 HT1 127 A 1 HETATM 8 C C7 HT1 . . . B 2 -0.302 -3.156 3.208 0.5 32.25 ? C7 HT1 127 A 1 HETATM 9 N N1 HT1 . . . B 2 -1.275 -3.398 2.306 0.5 28.58 ? N1 HT1 127 A 1 HETATM 10 C C8 HT1 . . . B 2 -1.243 -2.446 1.379 0.5 29.93 ? C8 HT1 127 A 1 HETATM 11 C C9 HT1 . . . B 2 -0.201 -1.571 1.739 0.5 33.26 ? C9 HT1 127 A 1 HETATM 12 N N2 HT1 . . . B 2 0.347 -2.034 2.862 0.5 31.03 ? N2 HT1 127 A 1 HETATM 13 C C10 HT1 . . . B 2 0.083 -0.456 0.96 0.5 32.96 ? C10 HT1 127 A 1 HETATM 14 C C11 HT1 . . . B 2 -0.673 -0.216 -0.179 0.5 34.22 ? C11 HT1 127 A 1 HETATM 15 C C12 HT1 . . . B 2 -1.72 -1.075 -0.544 0.5 28.82 ? C12 HT1 127 A 1 HETATM 16 C C13 HT1 . . . B 2 -2.016 -2.218 0.224 0.5 29.74 ? C13 HT1 127 A 1 HETATM 17 C C14 HT1 . . . B 2 -2.434 -0.791 -1.712 0.5 31.83 ? C14 HT1 127 A 1 HETATM 18 N N3 HT1 . . . B 2 -3.322 -1.599 -2.311 0.5 25.67 ? N3 HT1 127 A 1 HETATM 19 C C15 HT1 . . . B 2 -3.774 -0.984 -3.41 0.5 29.88 ? C15 HT1 127 A 1 HETATM 20 C C16 HT1 . . . B 2 -3.117 0.245 -3.495 0.5 32.23 ? C16 HT1 127 A 1 HETATM 21 N N4 HT1 . . . B 2 -2.301 0.331 -2.447 0.5 32.06 ? N4 HT1 127 A 1 HETATM 22 C C17 HT1 . . . B 2 -3.378 1.111 -4.557 0.5 33.53 ? C17 HT1 127 A 1 HETATM 23 C C18 HT1 . . . B 2 -4.308 0.75 -5.541 0.5 34.6 ? C18 HT1 127 A 1 HETATM 24 C C19 HT1 . . . B 2 -4.983 -0.471 -5.461 0.5 34.68 ? C19 HT1 127 A 1 HETATM 25 C C20 HT1 . . . B 2 -4.705 -1.35 -4.394 0.5 30.1 ? C20 HT1 127 A 1 HETATM 26 N N5 HT1 . . . B 2 -5.854 -0.828 -6.438 0.5 36.92 ? N5 HT1 127 A 1 HETATM 27 C C21 HT1 . . . B 2 -6.991 0.096 -6.614 0.5 37.5 ? C21 HT1 127 A 1 HETATM 28 C C22 HT1 . . . B 2 -7.824 -0.352 -7.843 0.5 40.13 ? C22 HT1 127 A 1 HETATM 29 N N6 HT1 . . . B 2 -8.272 -1.761 -7.692 0.5 42.24 ? N6 HT1 127 A 1 HETATM 30 C C23 HT1 . . . B 2 -7.116 -2.65 -7.469 0.5 43.74 ? C23 HT1 127 A 1 HETATM 31 C C24 HT1 . . . B 2 -6.359 -2.187 -6.214 0.5 41.84 ? C24 HT1 127 A 1 HETATM 32 C C25 HT1 . . . B 2 -8.983 -2.217 -8.896 0.5 41.35 ? C25 HT1 127 A 1 HETATM 33 C C26 HT1 . . . B 2 0.012 -7.584 7.528 0.5 34.87 ? C26 HT1 127 A 1 HETATM 34 C C27 HT1 . . . B 2 -0.173 -8.191 8.925 0.5 39.25 ? C27 HT1 127 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 34 #