data_3F8F # _model_server_result.job_id xgVb5LOPTD2V2I-KyXzJ9A _model_server_result.datetime_utc '2024-11-21 11:02:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":127}' # _entry.id 3F8F # _exptl.entry_id 3F8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.52 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DAUNOMYCIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F8F _cell.length_a 35.45 _cell.length_b 53.025 _cell.length_c 147.116 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H29 N O10' _chem_comp.formula_weight 527.52 _chem_comp.id DM1 _chem_comp.mon_nstd_flag . _chem_comp.name DAUNOMYCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DAUNORUBICIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DM1 doub 70 n y C1 C20 DM1 sing 71 n y C1 H1 DM1 sing 72 n n C2 C3 DM1 sing 73 n y C2 H2 DM1 sing 74 n n C3 C4 DM1 doub 75 n y C3 H3 DM1 sing 76 n n C4 O4 DM1 sing 77 n n C4 C5 DM1 sing 78 n y O4 C21 DM1 sing 79 n n C5 C6 DM1 sing 80 n n C5 C20 DM1 doub 81 n y C6 O6 DM1 doub 82 n n C6 C7 DM1 sing 83 n n C7 C8 DM1 doub 84 n y C7 C18 DM1 sing 85 n y C8 O8 DM1 sing 86 n n C8 C9 DM1 sing 87 n y O8 HO8 DM1 sing 88 n n C9 C10 DM1 sing 89 n n C9 C16 DM1 doub 90 n y C10 O10 DM1 sing 91 n n C10 C11 DM1 sing 92 n n C10 H10 DM1 sing 93 n n O10 C1' DM1 sing 94 n n C11 C12 DM1 sing 95 n n C11 H111 DM1 sing 96 n n C11 H112 DM1 sing 97 n n C12 O12 DM1 sing 98 n n C12 C13 DM1 sing 99 n n C12 C15 DM1 sing 100 n n O12 HO12 DM1 sing 101 n n C13 O13 DM1 doub 102 n n C13 C14 DM1 sing 103 n n C14 H141 DM1 sing 104 n n C14 H142 DM1 sing 105 n n C14 H143 DM1 sing 106 n n C15 C16 DM1 sing 107 n n C15 H151 DM1 sing 108 n n C15 H152 DM1 sing 109 n n C16 C17 DM1 sing 110 n y C17 O17 DM1 sing 111 n n C17 C18 DM1 doub 112 n y O17 HO17 DM1 sing 113 n n C18 C19 DM1 sing 114 n n C19 O19 DM1 doub 115 n n C19 C20 DM1 sing 116 n n C21 H211 DM1 sing 117 n n C21 H212 DM1 sing 118 n n C21 H213 DM1 sing 119 n n C1' C2' DM1 sing 120 n n C1' O5' DM1 sing 121 n n C1' H1' DM1 sing 122 n n C2' C3' DM1 sing 123 n n C2' "H2'1" DM1 sing 124 n n C2' "H2'2" DM1 sing 125 n n C3' N3' DM1 sing 126 n n C3' C4' DM1 sing 127 n n C3' H3' DM1 sing 128 n n N3' "HN'1" DM1 sing 129 n n N3' "HN'2" DM1 sing 130 n n C4' O4' DM1 sing 131 n n C4' C5' DM1 sing 132 n n C4' H4' DM1 sing 133 n n O4' HO4' DM1 sing 134 n n C5' O5' DM1 sing 135 n n C5' C6' DM1 sing 136 n n C5' H5' DM1 sing 137 n n C6' "H6'1" DM1 sing 138 n n C6' "H6'2" DM1 sing 139 n n C6' "H6'3" DM1 sing 140 n n # _atom_sites.entry_id 3F8F _atom_sites.fract_transf_matrix[1][1] 0.028209 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DM1 A 1 127 1 DM1 DM1 . D 3 HOH A 1 128 1 HOH HOH . D 3 HOH A 2 129 4 HOH HOH . D 3 HOH A 3 131 8 HOH HOH . D 3 HOH A 4 132 9 HOH HOH . D 3 HOH A 5 133 10 HOH HOH . D 3 HOH A 6 134 14 HOH HOH . D 3 HOH A 7 136 16 HOH HOH . D 3 HOH A 8 139 19 HOH HOH . D 3 HOH A 9 140 20 HOH HOH . D 3 HOH A 10 141 21 HOH HOH . D 3 HOH A 11 143 23 HOH HOH . D 3 HOH A 12 147 27 HOH HOH . D 3 HOH A 13 149 29 HOH HOH . D 3 HOH A 14 157 37 HOH HOH . D 3 HOH A 15 158 38 HOH HOH . E 3 HOH B 1 127 2 HOH HOH . E 3 HOH B 2 128 3 HOH HOH . E 3 HOH B 3 129 6 HOH HOH . E 3 HOH B 4 130 7 HOH HOH . E 3 HOH B 5 131 11 HOH HOH . E 3 HOH B 6 132 12 HOH HOH . E 3 HOH B 7 133 13 HOH HOH . E 3 HOH B 8 134 5 HOH HOH . E 3 HOH B 9 135 15 HOH HOH . E 3 HOH B 10 137 17 HOH HOH . E 3 HOH B 11 138 18 HOH HOH . E 3 HOH B 12 142 22 HOH HOH . E 3 HOH B 13 144 24 HOH HOH . E 3 HOH B 14 145 25 HOH HOH . E 3 HOH B 15 146 26 HOH HOH . E 3 HOH B 16 148 28 HOH HOH . E 3 HOH B 17 150 30 HOH HOH . E 3 HOH B 18 151 31 HOH HOH . E 3 HOH B 19 152 32 HOH HOH . E 3 HOH B 20 153 33 HOH HOH . E 3 HOH B 21 154 34 HOH HOH . E 3 HOH B 22 155 35 HOH HOH . E 3 HOH B 23 156 36 HOH HOH . E 3 HOH B 24 159 39 HOH HOH . E 3 HOH B 25 160 40 HOH HOH . E 3 HOH B 26 161 41 HOH HOH . E 3 HOH B 27 162 42 HOH HOH . E 3 HOH B 28 163 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DM1 . . . C 2 25.477 39.168 47.947 1 68.9 ? C1 DM1 127 A 1 HETATM 2 C C2 DM1 . . . C 2 26.112 38.79 46.773 1 68.98 ? C2 DM1 127 A 1 HETATM 3 C C3 DM1 . . . C 2 25.447 38.03 45.825 1 69.09 ? C3 DM1 127 A 1 HETATM 4 C C4 DM1 . . . C 2 24.129 37.636 46.042 1 69.28 ? C4 DM1 127 A 1 HETATM 5 O O4 DM1 . . . C 2 23.54 36.954 45.186 1 68.68 ? O4 DM1 127 A 1 HETATM 6 C C5 DM1 . . . C 2 23.477 38.019 47.235 1 69.28 ? C5 DM1 127 A 1 HETATM 7 C C6 DM1 . . . C 2 22.156 37.638 47.475 1 68.95 ? C6 DM1 127 A 1 HETATM 8 O O6 DM1 . . . C 2 21.554 36.962 46.639 1 68.78 ? O6 DM1 127 A 1 HETATM 9 C C7 DM1 . . . C 2 21.513 38.021 48.664 1 68.72 ? C7 DM1 127 A 1 HETATM 10 C C8 DM1 . . . C 2 20.191 37.63 48.885 1 68.79 ? C8 DM1 127 A 1 HETATM 11 O O8 DM1 . . . C 2 19.539 36.881 47.949 1 69.23 ? O8 DM1 127 A 1 HETATM 12 C C9 DM1 . . . C 2 19.483 38.026 50.145 1 69.41 ? C9 DM1 127 A 1 HETATM 13 C C10 DM1 . . . C 2 18.068 37.612 50.398 1 69.75 ? C10 DM1 127 A 1 HETATM 14 O O10 DM1 . . . C 2 17.738 36.539 49.533 1 74.05 ? O10 DM1 127 A 1 HETATM 15 C C11 DM1 . . . C 2 17.974 37.106 51.835 1 71.75 ? C11 DM1 127 A 1 HETATM 16 C C12 DM1 . . . C 2 18.52 38.078 52.9 1 72.09 ? C12 DM1 127 A 1 HETATM 17 O O12 DM1 . . . C 2 19.28 37.299 53.851 1 74.7 ? O12 DM1 127 A 1 HETATM 18 C C13 DM1 . . . C 2 17.33 38.721 53.629 1 73.29 ? C13 DM1 127 A 1 HETATM 19 O O13 DM1 . . . C 2 16.123 38.631 53.108 1 73.94 ? O13 DM1 127 A 1 HETATM 20 C C14 DM1 . . . C 2 17.573 39.441 54.931 1 72.79 ? C14 DM1 127 A 1 HETATM 21 C C15 DM1 . . . C 2 19.44 39.186 52.357 1 69.33 ? C15 DM1 127 A 1 HETATM 22 C C16 DM1 . . . C 2 20.145 38.776 51.083 1 69.17 ? C16 DM1 127 A 1 HETATM 23 C C17 DM1 . . . C 2 21.567 39.186 50.82 1 69.16 ? C17 DM1 127 A 1 HETATM 24 O O17 DM1 . . . C 2 22.251 39.943 51.748 1 68.91 ? O17 DM1 127 A 1 HETATM 25 C C18 DM1 . . . C 2 22.2 38.795 49.622 1 69.08 ? C18 DM1 127 A 1 HETATM 26 C C19 DM1 . . . C 2 23.526 39.178 49.38 1 69.29 ? C19 DM1 127 A 1 HETATM 27 O O19 DM1 . . . C 2 24.139 39.861 50.222 1 68.62 ? O19 DM1 127 A 1 HETATM 28 C C20 DM1 . . . C 2 24.162 38.788 48.185 1 69.2 ? C20 DM1 127 A 1 HETATM 29 C C21 DM1 . . . C 2 24.272 36.156 44.28 1 67.4 ? C21 DM1 127 A 1 HETATM 30 C C1' DM1 . . . C 2 16.344 36.424 49.297 1 78.11 ? C1' DM1 127 A 1 HETATM 31 C C2' DM1 . . . C 2 16.104 35.89 47.876 1 80.06 ? C2' DM1 127 A 1 HETATM 32 C C3' DM1 . . . C 2 16.581 34.436 47.726 1 81.31 ? C3' DM1 127 A 1 HETATM 33 N N3' DM1 . . . C 2 16.108 33.894 46.461 1 81.36 ? N3' DM1 127 A 1 HETATM 34 C C4' DM1 . . . C 2 16.103 33.548 48.894 1 81.65 ? C4' DM1 127 A 1 HETATM 35 O O4' DM1 . . . C 2 14.732 33.213 48.73 1 82.11 ? O4' DM1 127 A 1 HETATM 36 C C5' DM1 . . . C 2 16.329 34.24 50.255 1 81.26 ? C5' DM1 127 A 1 HETATM 37 O O5' DM1 . . . C 2 15.746 35.544 50.253 1 79.91 ? O5' DM1 127 A 1 HETATM 38 C C6' DM1 . . . C 2 15.757 33.421 51.411 1 81.13 ? C6' DM1 127 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #