data_3F8K # _model_server_result.job_id ccjGPbZW7owBAMmJavlg0w _model_server_result.datetime_utc '2025-08-31 00:55:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3F8K # _exptl.entry_id 3F8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F8K _cell.length_a 44.701 _cell.length_b 46.75 _cell.length_c 68.624 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 120 A PRO 120 1_555 A N MSE 121 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 121 A MSE 121 1_555 A N ILE 122 A ILE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C LYS 131 A LYS 131 1_555 A N MSE 132 A MSE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 132 A MSE 132 1_555 A N ARG 133 A ARG 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C GLU 142 A GLU 142 1_555 A N MSE 143 A MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 143 A MSE 143 1_555 A N ARG 144 A ARG 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 3F8K _atom_sites.fract_transf_matrix[1][1] 0.022371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 301 500 COA COA . C 3 HOH A 1 161 1 HOH HOH . C 3 HOH A 2 162 3 HOH HOH . C 3 HOH A 3 163 4 HOH HOH . C 3 HOH A 4 164 5 HOH HOH . C 3 HOH A 5 165 6 HOH HOH . C 3 HOH A 6 166 7 HOH HOH . C 3 HOH A 7 167 9 HOH HOH . C 3 HOH A 8 168 10 HOH HOH . C 3 HOH A 9 169 11 HOH HOH . C 3 HOH A 10 170 13 HOH HOH . C 3 HOH A 11 171 14 HOH HOH . C 3 HOH A 12 172 15 HOH HOH . C 3 HOH A 13 173 16 HOH HOH . C 3 HOH A 14 174 18 HOH HOH . C 3 HOH A 15 175 20 HOH HOH . C 3 HOH A 16 176 21 HOH HOH . C 3 HOH A 17 177 22 HOH HOH . C 3 HOH A 18 178 23 HOH HOH . C 3 HOH A 19 179 24 HOH HOH . C 3 HOH A 20 180 25 HOH HOH . C 3 HOH A 21 181 26 HOH HOH . C 3 HOH A 22 182 29 HOH HOH . C 3 HOH A 23 183 31 HOH HOH . C 3 HOH A 24 184 32 HOH HOH . C 3 HOH A 25 185 33 HOH HOH . C 3 HOH A 26 186 34 HOH HOH . C 3 HOH A 27 187 36 HOH HOH . C 3 HOH A 28 188 37 HOH HOH . C 3 HOH A 29 189 38 HOH HOH . C 3 HOH A 30 190 39 HOH HOH . C 3 HOH A 31 191 40 HOH HOH . C 3 HOH A 32 192 41 HOH HOH . C 3 HOH A 33 193 43 HOH HOH . C 3 HOH A 34 194 45 HOH HOH . C 3 HOH A 35 195 48 HOH HOH . C 3 HOH A 36 196 49 HOH HOH . C 3 HOH A 37 197 50 HOH HOH . C 3 HOH A 38 198 51 HOH HOH . C 3 HOH A 39 199 52 HOH HOH . C 3 HOH A 40 200 53 HOH HOH . C 3 HOH A 41 201 54 HOH HOH . C 3 HOH A 42 202 55 HOH HOH . C 3 HOH A 43 203 56 HOH HOH . C 3 HOH A 44 204 57 HOH HOH . C 3 HOH A 45 205 58 HOH HOH . C 3 HOH A 46 206 59 HOH HOH . C 3 HOH A 47 207 60 HOH HOH . C 3 HOH A 48 208 61 HOH HOH . C 3 HOH A 49 209 62 HOH HOH . C 3 HOH A 50 210 63 HOH HOH . C 3 HOH A 51 211 64 HOH HOH . C 3 HOH A 52 212 65 HOH HOH . C 3 HOH A 53 213 66 HOH HOH . C 3 HOH A 54 214 67 HOH HOH . C 3 HOH A 55 215 68 HOH HOH . C 3 HOH A 56 216 69 HOH HOH . C 3 HOH A 57 217 70 HOH HOH . C 3 HOH A 58 218 71 HOH HOH . C 3 HOH A 59 219 72 HOH HOH . C 3 HOH A 60 220 73 HOH HOH . C 3 HOH A 61 221 74 HOH HOH . C 3 HOH A 62 222 75 HOH HOH . C 3 HOH A 63 223 76 HOH HOH . C 3 HOH A 64 224 77 HOH HOH . C 3 HOH A 65 225 78 HOH HOH . C 3 HOH A 66 226 79 HOH HOH . C 3 HOH A 67 227 80 HOH HOH . C 3 HOH A 68 228 81 HOH HOH . C 3 HOH A 69 229 82 HOH HOH . C 3 HOH A 70 230 83 HOH HOH . C 3 HOH A 71 231 84 HOH HOH . C 3 HOH A 72 232 85 HOH HOH . C 3 HOH A 73 233 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 31.653 8.837 19.546 1 37.37 ? N1A COA 301 A 1 HETATM 2 C C2A COA . . . B 2 31.848 8.535 18.481 1 36.59 ? C2A COA 301 A 1 HETATM 3 N N3A COA . . . B 2 31.563 8.985 17.394 1 35.06 ? N3A COA 301 A 1 HETATM 4 C C4A COA . . . B 2 30.828 10.144 17.576 1 34.14 ? C4A COA 301 A 1 HETATM 5 C C5A COA . . . B 2 30.438 10.757 18.828 1 34.67 ? C5A COA 301 A 1 HETATM 6 C C6A COA . . . B 2 30.901 10.021 20.079 1 37.65 ? C6A COA 301 A 1 HETATM 7 N N6A COA . . . B 2 30.623 10.453 21.269 1 39.4 ? N6A COA 301 A 1 HETATM 8 N N7A COA . . . B 2 29.72 11.891 18.637 1 35.47 ? N7A COA 301 A 1 HETATM 9 C C8A COA . . . B 2 29.636 12.025 17.289 1 34.83 ? C8A COA 301 A 1 HETATM 10 N N9A COA . . . B 2 30.288 10.998 16.592 1 34.1 ? N9A COA 301 A 1 HETATM 11 C C1B COA . . . B 2 30.397 10.812 15.094 1 34.65 ? C1B COA 301 A 1 HETATM 12 C C2B COA . . . B 2 29.089 10.948 14.351 1 37.03 ? C2B COA 301 A 1 HETATM 13 O O2B COA . . . B 2 28.25 9.862 14.723 1 38.26 ? O2B COA 301 A 1 HETATM 14 C C3B COA . . . B 2 29.528 10.963 12.873 1 37.05 ? C3B COA 301 A 1 HETATM 15 O O3B COA . . . B 2 29.748 9.658 12.415 1 43.1 ? O3B COA 301 A 1 HETATM 16 P P3B COA . . . B 2 30.171 9.504 10.798 1 44.9 ? P3B COA 301 A 1 HETATM 17 O O7A COA . . . B 2 28.869 9.97 9.996 1 47.71 ? O7A COA 301 A 1 HETATM 18 O O8A COA . . . B 2 30.406 7.967 10.403 1 47.6 ? O8A COA 301 A 1 HETATM 19 O O9A COA . . . B 2 31.415 10.441 10.46 1 47.56 ? O9A COA 301 A 1 HETATM 20 C C4B COA . . . B 2 30.762 11.916 12.982 1 35.64 ? C4B COA 301 A 1 HETATM 21 O O4B COA . . . B 2 31.235 11.8 14.419 1 34.58 ? O4B COA 301 A 1 HETATM 22 C C5B COA . . . B 2 30.565 13.419 12.668 1 33.12 ? C5B COA 301 A 1 HETATM 23 O O5B COA . . . B 2 29.2 13.804 13.001 1 27.14 ? O5B COA 301 A 1 HETATM 24 P P1A COA . . . B 2 28.589 15.242 12.52 1 21 ? P1A COA 301 A 1 HETATM 25 O O1A COA . . . B 2 27.196 15.3 13.043 1 18.58 ? O1A COA 301 A 1 HETATM 26 O O2A COA . . . B 2 28.7 15.429 11.027 1 19.46 ? O2A COA 301 A 1 HETATM 27 O O3A COA . . . B 2 29.396 16.293 13.229 1 19.18 ? O3A COA 301 A 1 HETATM 28 P P2A COA . . . B 2 29.034 17.288 14.47 1 18.02 ? P2A COA 301 A 1 HETATM 29 O O4A COA . . . B 2 28.616 16.512 15.693 1 17.42 ? O4A COA 301 A 1 HETATM 30 O O5A COA . . . B 2 27.93 18.267 14.146 1 17.56 ? O5A COA 301 A 1 HETATM 31 O O6A COA . . . B 2 30.436 18.067 14.613 1 17.46 ? O6A COA 301 A 1 HETATM 32 C CBP COA . . . B 2 32.651 18.455 15.603 1 16.04 ? CBP COA 301 A 1 HETATM 33 C CCP COA . . . B 2 31.706 17.442 14.869 1 15.3 ? CCP COA 301 A 1 HETATM 34 C CDP COA . . . B 2 34.086 17.84 15.858 1 16.99 ? CDP COA 301 A 1 HETATM 35 C CEP COA . . . B 2 32.676 19.681 14.643 1 17.2 ? CEP COA 301 A 1 HETATM 36 C CAP COA . . . B 2 31.939 18.718 17.025 1 17.35 ? CAP COA 301 A 1 HETATM 37 O OAP COA . . . B 2 31.968 17.523 17.88 1 17.88 ? OAP COA 301 A 1 HETATM 38 C C9P COA . . . B 2 32.586 19.888 17.777 1 17.58 ? C9P COA 301 A 1 HETATM 39 O O9P COA . . . B 2 32.116 21.134 17.581 1 18.68 ? O9P COA 301 A 1 HETATM 40 N N8P COA . . . B 2 33.601 19.586 18.563 1 18.52 ? N8P COA 301 A 1 HETATM 41 C C7P COA . . . B 2 34.385 20.564 19.362 1 19.48 ? C7P COA 301 A 1 HETATM 42 C C6P COA . . . B 2 35.247 21.437 18.443 1 17.05 ? C6P COA 301 A 1 HETATM 43 C C5P COA . . . B 2 36.208 20.616 17.622 1 19.82 ? C5P COA 301 A 1 HETATM 44 O O5P COA . . . B 2 36.677 19.474 18.006 1 18.21 ? O5P COA 301 A 1 HETATM 45 N N4P COA . . . B 2 36.519 21.187 16.476 1 20.12 ? N4P COA 301 A 1 HETATM 46 C C3P COA . . . B 2 37.472 20.623 15.424 1 22.44 ? C3P COA 301 A 1 HETATM 47 C C2P COA . . . B 2 38.305 21.327 14.682 1 23.31 ? C2P COA 301 A 1 HETATM 48 S S1P COA . . . B 2 39.547 20.576 13.335 1 23.59 ? S1P COA 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #