data_3F91
#
_model_server_result.job_id            Xg7QBcUF1NTtX-b8ADR-bQ 
_model_server_result.datetime_utc      '2024-11-29 12:22:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3f91 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":187}' 
#
_entry.id    3F91 
#
_exptl.entry_id    3F91 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              346.381 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,4-DIAMINO-5-[2-METHOXY-5-(4-CARBOXYBUTYLOXY)BENZYL]PYRIMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3F91 
_cell.length_a            84.629 
_cell.length_b            84.629 
_cell.length_c            77.92 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3F91 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H22 N4 O4' 
_chem_comp.formula_weight    346.381 
_chem_comp.id                DH1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,4-DIAMINO-5-[2-METHOXY-5-(4-CARBOXYBUTYLOXY)BENZYL]PYRIMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 O1 DH1 sing 83 n n 
C16 H161 DH1 sing 84 n n 
C16 H162 DH1 sing 85 n n 
C16 H163 DH1 sing 86 n n 
O1 C2' DH1 sing 87 n n 
C2' C3' DH1 doub 88 n y 
C2' C1' DH1 sing 89 n y 
C3' C4' DH1 sing 90 n y 
C3' H3' DH1 sing 91 n n 
C4' C5' DH1 doub 92 n y 
C4' H4' DH1 sing 93 n n 
C5' O5' DH1 sing 94 n n 
C5' C6' DH1 sing 95 n y 
O5' C52 DH1 sing 96 n n 
C52 C1 DH1 sing 97 n n 
C52 H521 DH1 sing 98 n n 
C52 H522 DH1 sing 99 n n 
C1 C3 DH1 sing 100 n n 
C1 H11 DH1 sing 101 n n 
C1 H12 DH1 sing 102 n n 
C3 C7 DH1 sing 103 n n 
C3 H31 DH1 sing 104 n n 
C3 H32 DH1 sing 105 n n 
C7 C8 DH1 sing 106 n n 
C7 H71 DH1 sing 107 n n 
C7 H72 DH1 sing 108 n n 
C8 O9 DH1 sing 109 n n 
C8 O10 DH1 doub 110 n n 
O9 HO9 DH1 sing 111 n n 
C6' C1' DH1 doub 112 n y 
C6' H6' DH1 sing 113 n n 
C1' C51 DH1 sing 114 n n 
C51 C5 DH1 sing 115 n n 
C51 H511 DH1 sing 116 n n 
C51 H512 DH1 sing 117 n n 
C5 C6 DH1 doub 118 n y 
C5 C4 DH1 sing 119 n y 
C6 N1 DH1 sing 120 n y 
C6 H6 DH1 sing 121 n n 
N1 C2 DH1 doub 122 n y 
C2 N2 DH1 sing 123 n n 
C2 N3 DH1 sing 124 n y 
N2 HN21 DH1 sing 125 n n 
N2 HN22 DH1 sing 126 n n 
N3 C4 DH1 doub 127 n y 
C4 N4 DH1 sing 128 n n 
N4 HN41 DH1 sing 129 n n 
N4 HN42 DH1 sing 130 n n 
#
_atom_sites.entry_id                     3F91 
_atom_sites.fract_transf_matrix[1][1]    0.011816 
_atom_sites.fract_transf_matrix[1][2]    0.006822 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013644 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012834 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DH1 A 1 187 187 DH1 DH1 . 
C 3 NDP A 1 188 188 NDP COE . 
D 4 SO4 A 1 189 1 SO4 SO4 . 
E 4 SO4 A 1 190 2 SO4 SO4 . 
F 5 HOH A 1 191 1 HOH HOH . 
F 5 HOH A 2 192 2 HOH HOH . 
F 5 HOH A 3 193 3 HOH HOH . 
F 5 HOH A 4 194 4 HOH HOH . 
F 5 HOH A 5 195 5 HOH HOH . 
F 5 HOH A 6 196 6 HOH HOH . 
F 5 HOH A 7 197 7 HOH HOH . 
F 5 HOH A 8 198 8 HOH HOH . 
F 5 HOH A 9 199 9 HOH HOH . 
F 5 HOH A 10 200 10 HOH HOH . 
F 5 HOH A 11 201 11 HOH HOH . 
F 5 HOH A 12 202 12 HOH HOH . 
F 5 HOH A 13 203 13 HOH HOH . 
F 5 HOH A 14 204 14 HOH HOH . 
F 5 HOH A 15 205 15 HOH HOH . 
F 5 HOH A 16 206 16 HOH HOH . 
F 5 HOH A 17 207 17 HOH HOH . 
F 5 HOH A 18 208 18 HOH HOH . 
F 5 HOH A 19 209 19 HOH HOH . 
F 5 HOH A 20 210 20 HOH HOH . 
F 5 HOH A 21 211 21 HOH HOH . 
F 5 HOH A 22 212 22 HOH HOH . 
F 5 HOH A 23 213 23 HOH HOH . 
F 5 HOH A 24 214 24 HOH HOH . 
F 5 HOH A 25 215 25 HOH HOH . 
F 5 HOH A 26 216 26 HOH HOH . 
F 5 HOH A 27 217 27 HOH HOH . 
F 5 HOH A 28 218 28 HOH HOH . 
F 5 HOH A 29 219 29 HOH HOH . 
F 5 HOH A 30 220 30 HOH HOH . 
F 5 HOH A 31 221 31 HOH HOH . 
F 5 HOH A 32 222 32 HOH HOH . 
F 5 HOH A 33 223 33 HOH HOH . 
F 5 HOH A 34 224 34 HOH HOH . 
F 5 HOH A 35 225 35 HOH HOH . 
F 5 HOH A 36 226 36 HOH HOH . 
F 5 HOH A 37 227 37 HOH HOH . 
F 5 HOH A 38 228 38 HOH HOH . 
F 5 HOH A 39 229 39 HOH HOH . 
F 5 HOH A 40 230 40 HOH HOH . 
F 5 HOH A 41 231 41 HOH HOH . 
F 5 HOH A 42 232 42 HOH HOH . 
F 5 HOH A 43 233 43 HOH HOH . 
F 5 HOH A 44 234 44 HOH HOH . 
F 5 HOH A 45 235 45 HOH HOH . 
F 5 HOH A 46 236 46 HOH HOH . 
F 5 HOH A 47 237 47 HOH HOH . 
F 5 HOH A 48 238 48 HOH HOH . 
F 5 HOH A 49 239 49 HOH HOH . 
F 5 HOH A 50 240 50 HOH HOH . 
F 5 HOH A 51 241 51 HOH HOH . 
F 5 HOH A 52 242 52 HOH HOH . 
F 5 HOH A 53 243 53 HOH HOH . 
F 5 HOH A 54 244 54 HOH HOH . 
F 5 HOH A 55 245 55 HOH HOH . 
F 5 HOH A 56 246 56 HOH HOH . 
F 5 HOH A 57 247 57 HOH HOH . 
F 5 HOH A 58 248 58 HOH HOH . 
F 5 HOH A 59 249 59 HOH HOH . 
F 5 HOH A 60 250 60 HOH HOH . 
F 5 HOH A 61 251 61 HOH HOH . 
F 5 HOH A 62 252 62 HOH HOH . 
F 5 HOH A 63 253 63 HOH HOH . 
F 5 HOH A 64 254 64 HOH HOH . 
F 5 HOH A 65 255 65 HOH HOH . 
F 5 HOH A 66 256 66 HOH HOH . 
F 5 HOH A 67 257 67 HOH HOH . 
F 5 HOH A 68 258 68 HOH HOH . 
F 5 HOH A 69 259 69 HOH HOH . 
F 5 HOH A 70 260 70 HOH HOH . 
F 5 HOH A 71 261 71 HOH HOH . 
F 5 HOH A 72 262 72 HOH HOH . 
F 5 HOH A 73 263 73 HOH HOH . 
F 5 HOH A 74 264 74 HOH HOH . 
F 5 HOH A 75 265 75 HOH HOH . 
F 5 HOH A 76 266 76 HOH HOH . 
F 5 HOH A 77 267 77 HOH HOH . 
F 5 HOH A 78 268 78 HOH HOH . 
F 5 HOH A 79 269 79 HOH HOH . 
F 5 HOH A 80 270 80 HOH HOH . 
F 5 HOH A 81 271 81 HOH HOH . 
F 5 HOH A 82 272 82 HOH HOH . 
F 5 HOH A 83 273 83 HOH HOH . 
F 5 HOH A 84 274 84 HOH HOH . 
F 5 HOH A 85 275 85 HOH HOH . 
F 5 HOH A 86 276 86 HOH HOH . 
F 5 HOH A 87 277 87 HOH HOH . 
F 5 HOH A 88 278 88 HOH HOH . 
F 5 HOH A 89 279 89 HOH HOH . 
F 5 HOH A 90 280 90 HOH HOH . 
F 5 HOH A 91 281 91 HOH HOH . 
F 5 HOH A 92 282 92 HOH HOH . 
F 5 HOH A 93 283 93 HOH HOH . 
F 5 HOH A 94 284 94 HOH HOH . 
F 5 HOH A 95 285 95 HOH HOH . 
F 5 HOH A 96 286 96 HOH HOH . 
F 5 HOH A 97 287 97 HOH HOH . 
F 5 HOH A 98 288 98 HOH HOH . 
F 5 HOH A 99 289 99 HOH HOH . 
F 5 HOH A 100 290 100 HOH HOH . 
F 5 HOH A 101 291 101 HOH HOH . 
F 5 HOH A 102 292 102 HOH HOH . 
F 5 HOH A 103 293 103 HOH HOH . 
F 5 HOH A 104 294 104 HOH HOH . 
F 5 HOH A 105 295 105 HOH HOH . 
F 5 HOH A 106 296 106 HOH HOH . 
F 5 HOH A 107 297 107 HOH HOH . 
F 5 HOH A 108 298 108 HOH HOH . 
F 5 HOH A 109 299 109 HOH HOH . 
F 5 HOH A 110 300 110 HOH HOH . 
F 5 HOH A 111 301 111 HOH HOH . 
F 5 HOH A 112 302 112 HOH HOH . 
F 5 HOH A 113 303 113 HOH HOH . 
F 5 HOH A 114 304 114 HOH HOH . 
F 5 HOH A 115 305 115 HOH HOH . 
F 5 HOH A 116 306 116 HOH HOH . 
F 5 HOH A 117 307 117 HOH HOH . 
F 5 HOH A 118 308 118 HOH HOH . 
F 5 HOH A 119 309 119 HOH HOH . 
F 5 HOH A 120 310 120 HOH HOH . 
F 5 HOH A 121 311 121 HOH HOH . 
F 5 HOH A 122 312 122 HOH HOH . 
F 5 HOH A 123 313 123 HOH HOH . 
F 5 HOH A 124 314 124 HOH HOH . 
F 5 HOH A 125 315 125 HOH HOH . 
F 5 HOH A 126 316 126 HOH HOH . 
F 5 HOH A 127 317 127 HOH HOH . 
F 5 HOH A 128 318 128 HOH HOH . 
F 5 HOH A 129 319 129 HOH HOH . 
F 5 HOH A 130 320 130 HOH HOH . 
F 5 HOH A 131 321 131 HOH HOH . 
F 5 HOH A 132 322 132 HOH HOH . 
F 5 HOH A 133 323 133 HOH HOH . 
F 5 HOH A 134 324 134 HOH HOH . 
F 5 HOH A 135 325 135 HOH HOH . 
F 5 HOH A 136 326 136 HOH HOH . 
F 5 HOH A 137 327 137 HOH HOH . 
F 5 HOH A 138 328 138 HOH HOH . 
F 5 HOH A 139 329 139 HOH HOH . 
F 5 HOH A 140 330 140 HOH HOH . 
F 5 HOH A 141 331 141 HOH HOH . 
F 5 HOH A 142 332 142 HOH HOH . 
F 5 HOH A 143 333 143 HOH HOH . 
F 5 HOH A 144 334 144 HOH HOH . 
F 5 HOH A 145 335 145 HOH HOH . 
F 5 HOH A 146 336 146 HOH HOH . 
F 5 HOH A 147 337 147 HOH HOH . 
F 5 HOH A 148 338 148 HOH HOH . 
F 5 HOH A 149 339 149 HOH HOH . 
F 5 HOH A 150 340 150 HOH HOH . 
F 5 HOH A 151 341 151 HOH HOH . 
F 5 HOH A 152 342 152 HOH HOH . 
F 5 HOH A 153 343 153 HOH HOH . 
F 5 HOH A 154 344 154 HOH HOH . 
F 5 HOH A 155 345 155 HOH HOH . 
F 5 HOH A 156 346 156 HOH HOH . 
F 5 HOH A 157 347 157 HOH HOH . 
F 5 HOH A 158 348 158 HOH HOH . 
F 5 HOH A 159 349 159 HOH HOH . 
F 5 HOH A 160 350 160 HOH HOH . 
F 5 HOH A 161 351 161 HOH HOH . 
F 5 HOH A 162 352 162 HOH HOH . 
F 5 HOH A 163 353 163 HOH HOH . 
F 5 HOH A 164 354 164 HOH HOH . 
F 5 HOH A 165 355 165 HOH HOH . 
F 5 HOH A 166 356 166 HOH HOH . 
F 5 HOH A 167 357 167 HOH HOH . 
F 5 HOH A 168 358 168 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C16 DH1 . . . B 2 -1.627 18.312 3.189 1 11.03 ? C16 DH1 187 A 1 
HETATM 2 O O1 DH1 . . . B 2 -2.142 17.995 1.954 1 11.35 ? O1 DH1 187 A 1 
HETATM 3 C C2' DH1 . . . B 2 -1.818 16.836 1.478 1 10.62 ? C2' DH1 187 A 1 
HETATM 4 C C3' DH1 . . . B 2 -0.798 16.058 2.006 1 8.91 ? C3' DH1 187 A 1 
HETATM 5 C C4' DH1 . . . B 2 -0.461 14.871 1.465 1 10.46 ? C4' DH1 187 A 1 
HETATM 6 C C5' DH1 . . . B 2 -1.157 14.433 0.35 1 14.68 ? C5' DH1 187 A 1 
HETATM 7 O O5' DH1 . . . B 2 -0.871 13.266 -0.232 1 16.18 ? O5' DH1 187 A 1 
HETATM 8 C C52 DH1 . . . B 2 0.191 13.115 -0.853 1 20.71 ? C52 DH1 187 A 1 
HETATM 9 C C1 DH1 . . . B 2 0.782 11.777 -0.633 1 23.86 ? C1 DH1 187 A 1 
HETATM 10 C C3 DH1 . . . B 2 0.013 10.595 -1.223 1 28.63 ? C3 DH1 187 A 1 
HETATM 11 C C7 DH1 . . . B 2 -0.572 9.693 -0.084 1 31.39 ? C7 DH1 187 A 1 
HETATM 12 C C8 DH1 . . . B 2 -1.74 8.732 -0.367 1 33.75 ? C8 DH1 187 A 1 
HETATM 13 O O9 DH1 . . . B 2 -2.66 8.678 0.501 1 33.29 ? O9 DH1 187 A 1 
HETATM 14 O O10 DH1 . . . B 2 -1.735 8.148 -1.418 1 37.07 ? O10 DH1 187 A 1 
HETATM 15 C C6' DH1 . . . B 2 -2.183 15.209 -0.166 1 12.15 ? C6' DH1 187 A 1 
HETATM 16 C C1' DH1 . . . B 2 -2.507 16.412 0.36 1 10.61 ? C1' DH1 187 A 1 
HETATM 17 C C51 DH1 . . . B 2 -3.637 17.192 -0.272 1 9.4 ? C51 DH1 187 A 1 
HETATM 18 C C5 DH1 . . . B 2 -3.349 17.922 -1.572 1 8.36 ? C5 DH1 187 A 1 
HETATM 19 C C6 DH1 . . . B 2 -3.606 17.314 -2.782 1 8.41 ? C6 DH1 187 A 1 
HETATM 20 N N1 DH1 . . . B 2 -3.384 17.933 -3.895 1 7.98 ? N1 DH1 187 A 1 
HETATM 21 C C2 DH1 . . . B 2 -2.89 19.177 -3.925 1 6.41 ? C2 DH1 187 A 1 
HETATM 22 N N2 DH1 . . . B 2 -2.7 19.762 -5.05 1 6.52 ? N2 DH1 187 A 1 
HETATM 23 N N3 DH1 . . . B 2 -2.669 19.821 -2.802 1 6.11 ? N3 DH1 187 A 1 
HETATM 24 C C4 DH1 . . . B 2 -2.86 19.246 -1.646 1 7.28 ? C4 DH1 187 A 1 
HETATM 25 N N4 DH1 . . . B 2 -2.574 19.862 -0.594 1 6.94 ? N4 DH1 187 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           25 
#