data_3F91 # _model_server_result.job_id -_xk01sMK9lEhfPA0yNtsQ _model_server_result.datetime_utc '2024-11-08 18:14:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f91 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":187}' # _entry.id 3F91 # _exptl.entry_id 3F91 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.381 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-DIAMINO-5-[2-METHOXY-5-(4-CARBOXYBUTYLOXY)BENZYL]PYRIMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F91 _cell.length_a 84.629 _cell.length_b 84.629 _cell.length_c 77.92 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F91 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H22 N4 O4' _chem_comp.formula_weight 346.381 _chem_comp.id DH1 _chem_comp.mon_nstd_flag . _chem_comp.name 2,4-DIAMINO-5-[2-METHOXY-5-(4-CARBOXYBUTYLOXY)BENZYL]PYRIMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 O1 DH1 sing 83 n n C16 H161 DH1 sing 84 n n C16 H162 DH1 sing 85 n n C16 H163 DH1 sing 86 n n O1 C2' DH1 sing 87 n n C2' C3' DH1 doub 88 n y C2' C1' DH1 sing 89 n y C3' C4' DH1 sing 90 n y C3' H3' DH1 sing 91 n n C4' C5' DH1 doub 92 n y C4' H4' DH1 sing 93 n n C5' O5' DH1 sing 94 n n C5' C6' DH1 sing 95 n y O5' C52 DH1 sing 96 n n C52 C1 DH1 sing 97 n n C52 H521 DH1 sing 98 n n C52 H522 DH1 sing 99 n n C1 C3 DH1 sing 100 n n C1 H11 DH1 sing 101 n n C1 H12 DH1 sing 102 n n C3 C7 DH1 sing 103 n n C3 H31 DH1 sing 104 n n C3 H32 DH1 sing 105 n n C7 C8 DH1 sing 106 n n C7 H71 DH1 sing 107 n n C7 H72 DH1 sing 108 n n C8 O9 DH1 sing 109 n n C8 O10 DH1 doub 110 n n O9 HO9 DH1 sing 111 n n C6' C1' DH1 doub 112 n y C6' H6' DH1 sing 113 n n C1' C51 DH1 sing 114 n n C51 C5 DH1 sing 115 n n C51 H511 DH1 sing 116 n n C51 H512 DH1 sing 117 n n C5 C6 DH1 doub 118 n y C5 C4 DH1 sing 119 n y C6 N1 DH1 sing 120 n y C6 H6 DH1 sing 121 n n N1 C2 DH1 doub 122 n y C2 N2 DH1 sing 123 n n C2 N3 DH1 sing 124 n y N2 HN21 DH1 sing 125 n n N2 HN22 DH1 sing 126 n n N3 C4 DH1 doub 127 n y C4 N4 DH1 sing 128 n n N4 HN41 DH1 sing 129 n n N4 HN42 DH1 sing 130 n n # _atom_sites.entry_id 3F91 _atom_sites.fract_transf_matrix[1][1] 0.011816 _atom_sites.fract_transf_matrix[1][2] 0.006822 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DH1 A 1 187 187 DH1 DH1 . C 3 NDP A 1 188 188 NDP COE . D 4 SO4 A 1 189 1 SO4 SO4 . E 4 SO4 A 1 190 2 SO4 SO4 . F 5 HOH A 1 191 1 HOH HOH . F 5 HOH A 2 192 2 HOH HOH . F 5 HOH A 3 193 3 HOH HOH . F 5 HOH A 4 194 4 HOH HOH . F 5 HOH A 5 195 5 HOH HOH . F 5 HOH A 6 196 6 HOH HOH . F 5 HOH A 7 197 7 HOH HOH . F 5 HOH A 8 198 8 HOH HOH . F 5 HOH A 9 199 9 HOH HOH . F 5 HOH A 10 200 10 HOH HOH . F 5 HOH A 11 201 11 HOH HOH . F 5 HOH A 12 202 12 HOH HOH . F 5 HOH A 13 203 13 HOH HOH . F 5 HOH A 14 204 14 HOH HOH . F 5 HOH A 15 205 15 HOH HOH . F 5 HOH A 16 206 16 HOH HOH . F 5 HOH A 17 207 17 HOH HOH . F 5 HOH A 18 208 18 HOH HOH . F 5 HOH A 19 209 19 HOH HOH . F 5 HOH A 20 210 20 HOH HOH . F 5 HOH A 21 211 21 HOH HOH . F 5 HOH A 22 212 22 HOH HOH . F 5 HOH A 23 213 23 HOH HOH . F 5 HOH A 24 214 24 HOH HOH . F 5 HOH A 25 215 25 HOH HOH . F 5 HOH A 26 216 26 HOH HOH . F 5 HOH A 27 217 27 HOH HOH . F 5 HOH A 28 218 28 HOH HOH . F 5 HOH A 29 219 29 HOH HOH . F 5 HOH A 30 220 30 HOH HOH . F 5 HOH A 31 221 31 HOH HOH . F 5 HOH A 32 222 32 HOH HOH . F 5 HOH A 33 223 33 HOH HOH . F 5 HOH A 34 224 34 HOH HOH . F 5 HOH A 35 225 35 HOH HOH . F 5 HOH A 36 226 36 HOH HOH . F 5 HOH A 37 227 37 HOH HOH . F 5 HOH A 38 228 38 HOH HOH . F 5 HOH A 39 229 39 HOH HOH . F 5 HOH A 40 230 40 HOH HOH . F 5 HOH A 41 231 41 HOH HOH . F 5 HOH A 42 232 42 HOH HOH . F 5 HOH A 43 233 43 HOH HOH . F 5 HOH A 44 234 44 HOH HOH . F 5 HOH A 45 235 45 HOH HOH . F 5 HOH A 46 236 46 HOH HOH . F 5 HOH A 47 237 47 HOH HOH . F 5 HOH A 48 238 48 HOH HOH . F 5 HOH A 49 239 49 HOH HOH . F 5 HOH A 50 240 50 HOH HOH . F 5 HOH A 51 241 51 HOH HOH . F 5 HOH A 52 242 52 HOH HOH . F 5 HOH A 53 243 53 HOH HOH . F 5 HOH A 54 244 54 HOH HOH . F 5 HOH A 55 245 55 HOH HOH . F 5 HOH A 56 246 56 HOH HOH . F 5 HOH A 57 247 57 HOH HOH . F 5 HOH A 58 248 58 HOH HOH . F 5 HOH A 59 249 59 HOH HOH . F 5 HOH A 60 250 60 HOH HOH . F 5 HOH A 61 251 61 HOH HOH . F 5 HOH A 62 252 62 HOH HOH . F 5 HOH A 63 253 63 HOH HOH . F 5 HOH A 64 254 64 HOH HOH . F 5 HOH A 65 255 65 HOH HOH . F 5 HOH A 66 256 66 HOH HOH . F 5 HOH A 67 257 67 HOH HOH . F 5 HOH A 68 258 68 HOH HOH . F 5 HOH A 69 259 69 HOH HOH . F 5 HOH A 70 260 70 HOH HOH . F 5 HOH A 71 261 71 HOH HOH . F 5 HOH A 72 262 72 HOH HOH . F 5 HOH A 73 263 73 HOH HOH . F 5 HOH A 74 264 74 HOH HOH . F 5 HOH A 75 265 75 HOH HOH . F 5 HOH A 76 266 76 HOH HOH . F 5 HOH A 77 267 77 HOH HOH . F 5 HOH A 78 268 78 HOH HOH . F 5 HOH A 79 269 79 HOH HOH . F 5 HOH A 80 270 80 HOH HOH . F 5 HOH A 81 271 81 HOH HOH . F 5 HOH A 82 272 82 HOH HOH . F 5 HOH A 83 273 83 HOH HOH . F 5 HOH A 84 274 84 HOH HOH . F 5 HOH A 85 275 85 HOH HOH . F 5 HOH A 86 276 86 HOH HOH . F 5 HOH A 87 277 87 HOH HOH . F 5 HOH A 88 278 88 HOH HOH . F 5 HOH A 89 279 89 HOH HOH . F 5 HOH A 90 280 90 HOH HOH . F 5 HOH A 91 281 91 HOH HOH . F 5 HOH A 92 282 92 HOH HOH . F 5 HOH A 93 283 93 HOH HOH . F 5 HOH A 94 284 94 HOH HOH . F 5 HOH A 95 285 95 HOH HOH . F 5 HOH A 96 286 96 HOH HOH . F 5 HOH A 97 287 97 HOH HOH . F 5 HOH A 98 288 98 HOH HOH . F 5 HOH A 99 289 99 HOH HOH . F 5 HOH A 100 290 100 HOH HOH . F 5 HOH A 101 291 101 HOH HOH . F 5 HOH A 102 292 102 HOH HOH . F 5 HOH A 103 293 103 HOH HOH . F 5 HOH A 104 294 104 HOH HOH . F 5 HOH A 105 295 105 HOH HOH . F 5 HOH A 106 296 106 HOH HOH . F 5 HOH A 107 297 107 HOH HOH . F 5 HOH A 108 298 108 HOH HOH . F 5 HOH A 109 299 109 HOH HOH . F 5 HOH A 110 300 110 HOH HOH . F 5 HOH A 111 301 111 HOH HOH . F 5 HOH A 112 302 112 HOH HOH . F 5 HOH A 113 303 113 HOH HOH . F 5 HOH A 114 304 114 HOH HOH . F 5 HOH A 115 305 115 HOH HOH . F 5 HOH A 116 306 116 HOH HOH . F 5 HOH A 117 307 117 HOH HOH . F 5 HOH A 118 308 118 HOH HOH . F 5 HOH A 119 309 119 HOH HOH . F 5 HOH A 120 310 120 HOH HOH . F 5 HOH A 121 311 121 HOH HOH . F 5 HOH A 122 312 122 HOH HOH . F 5 HOH A 123 313 123 HOH HOH . F 5 HOH A 124 314 124 HOH HOH . F 5 HOH A 125 315 125 HOH HOH . F 5 HOH A 126 316 126 HOH HOH . F 5 HOH A 127 317 127 HOH HOH . F 5 HOH A 128 318 128 HOH HOH . F 5 HOH A 129 319 129 HOH HOH . F 5 HOH A 130 320 130 HOH HOH . F 5 HOH A 131 321 131 HOH HOH . F 5 HOH A 132 322 132 HOH HOH . F 5 HOH A 133 323 133 HOH HOH . F 5 HOH A 134 324 134 HOH HOH . F 5 HOH A 135 325 135 HOH HOH . F 5 HOH A 136 326 136 HOH HOH . F 5 HOH A 137 327 137 HOH HOH . F 5 HOH A 138 328 138 HOH HOH . F 5 HOH A 139 329 139 HOH HOH . F 5 HOH A 140 330 140 HOH HOH . F 5 HOH A 141 331 141 HOH HOH . F 5 HOH A 142 332 142 HOH HOH . F 5 HOH A 143 333 143 HOH HOH . F 5 HOH A 144 334 144 HOH HOH . F 5 HOH A 145 335 145 HOH HOH . F 5 HOH A 146 336 146 HOH HOH . F 5 HOH A 147 337 147 HOH HOH . F 5 HOH A 148 338 148 HOH HOH . F 5 HOH A 149 339 149 HOH HOH . F 5 HOH A 150 340 150 HOH HOH . F 5 HOH A 151 341 151 HOH HOH . F 5 HOH A 152 342 152 HOH HOH . F 5 HOH A 153 343 153 HOH HOH . F 5 HOH A 154 344 154 HOH HOH . F 5 HOH A 155 345 155 HOH HOH . F 5 HOH A 156 346 156 HOH HOH . F 5 HOH A 157 347 157 HOH HOH . F 5 HOH A 158 348 158 HOH HOH . F 5 HOH A 159 349 159 HOH HOH . F 5 HOH A 160 350 160 HOH HOH . F 5 HOH A 161 351 161 HOH HOH . F 5 HOH A 162 352 162 HOH HOH . F 5 HOH A 163 353 163 HOH HOH . F 5 HOH A 164 354 164 HOH HOH . F 5 HOH A 165 355 165 HOH HOH . F 5 HOH A 166 356 166 HOH HOH . F 5 HOH A 167 357 167 HOH HOH . F 5 HOH A 168 358 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 DH1 . . . B 2 -1.627 18.312 3.189 1 11.03 ? C16 DH1 187 A 1 HETATM 2 O O1 DH1 . . . B 2 -2.142 17.995 1.954 1 11.35 ? O1 DH1 187 A 1 HETATM 3 C C2' DH1 . . . B 2 -1.818 16.836 1.478 1 10.62 ? C2' DH1 187 A 1 HETATM 4 C C3' DH1 . . . B 2 -0.798 16.058 2.006 1 8.91 ? C3' DH1 187 A 1 HETATM 5 C C4' DH1 . . . B 2 -0.461 14.871 1.465 1 10.46 ? C4' DH1 187 A 1 HETATM 6 C C5' DH1 . . . B 2 -1.157 14.433 0.35 1 14.68 ? C5' DH1 187 A 1 HETATM 7 O O5' DH1 . . . B 2 -0.871 13.266 -0.232 1 16.18 ? O5' DH1 187 A 1 HETATM 8 C C52 DH1 . . . B 2 0.191 13.115 -0.853 1 20.71 ? C52 DH1 187 A 1 HETATM 9 C C1 DH1 . . . B 2 0.782 11.777 -0.633 1 23.86 ? C1 DH1 187 A 1 HETATM 10 C C3 DH1 . . . B 2 0.013 10.595 -1.223 1 28.63 ? C3 DH1 187 A 1 HETATM 11 C C7 DH1 . . . B 2 -0.572 9.693 -0.084 1 31.39 ? C7 DH1 187 A 1 HETATM 12 C C8 DH1 . . . B 2 -1.74 8.732 -0.367 1 33.75 ? C8 DH1 187 A 1 HETATM 13 O O9 DH1 . . . B 2 -2.66 8.678 0.501 1 33.29 ? O9 DH1 187 A 1 HETATM 14 O O10 DH1 . . . B 2 -1.735 8.148 -1.418 1 37.07 ? O10 DH1 187 A 1 HETATM 15 C C6' DH1 . . . B 2 -2.183 15.209 -0.166 1 12.15 ? C6' DH1 187 A 1 HETATM 16 C C1' DH1 . . . B 2 -2.507 16.412 0.36 1 10.61 ? C1' DH1 187 A 1 HETATM 17 C C51 DH1 . . . B 2 -3.637 17.192 -0.272 1 9.4 ? C51 DH1 187 A 1 HETATM 18 C C5 DH1 . . . B 2 -3.349 17.922 -1.572 1 8.36 ? C5 DH1 187 A 1 HETATM 19 C C6 DH1 . . . B 2 -3.606 17.314 -2.782 1 8.41 ? C6 DH1 187 A 1 HETATM 20 N N1 DH1 . . . B 2 -3.384 17.933 -3.895 1 7.98 ? N1 DH1 187 A 1 HETATM 21 C C2 DH1 . . . B 2 -2.89 19.177 -3.925 1 6.41 ? C2 DH1 187 A 1 HETATM 22 N N2 DH1 . . . B 2 -2.7 19.762 -5.05 1 6.52 ? N2 DH1 187 A 1 HETATM 23 N N3 DH1 . . . B 2 -2.669 19.821 -2.802 1 6.11 ? N3 DH1 187 A 1 HETATM 24 C C4 DH1 . . . B 2 -2.86 19.246 -1.646 1 7.28 ? C4 DH1 187 A 1 HETATM 25 N N4 DH1 . . . B 2 -2.574 19.862 -0.594 1 6.94 ? N4 DH1 187 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #