data_3F91 # _model_server_result.job_id hOk7NymLnn8eSX3BvdouOg _model_server_result.datetime_utc '2024-11-08 18:17:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f91 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":188}' # _entry.id 3F91 # _exptl.entry_id 3F91 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3F91 _cell.length_a 84.629 _cell.length_b 84.629 _cell.length_c 77.92 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F91 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 285 n n PA O2A NDP sing 286 n n PA O5B NDP sing 287 n n PA O3 NDP sing 288 n n O2A HOA2 NDP sing 289 n n O5B C5B NDP sing 290 n n C5B C4B NDP sing 291 n n C5B H51A NDP sing 292 n n C5B H52A NDP sing 293 n n C4B O4B NDP sing 294 n n C4B C3B NDP sing 295 n n C4B H4B NDP sing 296 n n O4B C1B NDP sing 297 n n C3B O3B NDP sing 298 n n C3B C2B NDP sing 299 n n C3B H3B NDP sing 300 n n O3B HO3A NDP sing 301 n n C2B O2B NDP sing 302 n n C2B C1B NDP sing 303 n n C2B H2B NDP sing 304 n n O2B P2B NDP sing 305 n n C1B N9A NDP sing 306 n n C1B H1B NDP sing 307 n n N9A C8A NDP sing 308 n y N9A C4A NDP sing 309 n y C8A N7A NDP doub 310 n y C8A H8A NDP sing 311 n n N7A C5A NDP sing 312 n y C5A C6A NDP sing 313 n y C5A C4A NDP doub 314 n y C6A N6A NDP sing 315 n n C6A N1A NDP doub 316 n y N6A H61A NDP sing 317 n n N6A H62A NDP sing 318 n n N1A C2A NDP sing 319 n y C2A N3A NDP doub 320 n y C2A H2A NDP sing 321 n n N3A C4A NDP sing 322 n y O3 PN NDP sing 323 n n PN O1N NDP doub 324 n n PN O2N NDP sing 325 n n PN O5D NDP sing 326 n n O2N H21N NDP sing 327 n n O5D C5D NDP sing 328 n n C5D C4D NDP sing 329 n n C5D H51N NDP sing 330 n n C5D H52N NDP sing 331 n n C4D O4D NDP sing 332 n n C4D C3D NDP sing 333 n n C4D H4D NDP sing 334 n n O4D C1D NDP sing 335 n n C3D O3D NDP sing 336 n n C3D C2D NDP sing 337 n n C3D H3D NDP sing 338 n n O3D HO3N NDP sing 339 n n C2D O2D NDP sing 340 n n C2D C1D NDP sing 341 n n C2D H2D NDP sing 342 n n O2D HO2N NDP sing 343 n n C1D N1N NDP sing 344 n n C1D H1D NDP sing 345 n n N1N C2N NDP sing 346 n n N1N C6N NDP sing 347 n n C2N C3N NDP doub 348 n n C2N H2N NDP sing 349 n n C3N C7N NDP sing 350 n n C3N C4N NDP sing 351 n n C7N O7N NDP doub 352 n n C7N N7N NDP sing 353 n n N7N H71N NDP sing 354 n n N7N H72N NDP sing 355 n n C4N C5N NDP sing 356 n n C4N H41N NDP sing 357 n n C4N H42N NDP sing 358 n n C5N C6N NDP doub 359 n n C5N H5N NDP sing 360 n n C6N H6N NDP sing 361 n n P2B O1X NDP doub 362 n n P2B O2X NDP sing 363 n n P2B O3X NDP sing 364 n n O2X HOP2 NDP sing 365 n n O3X HOP3 NDP sing 366 n n # _atom_sites.entry_id 3F91 _atom_sites.fract_transf_matrix[1][1] 0.011816 _atom_sites.fract_transf_matrix[1][2] 0.006822 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DH1 A 1 187 187 DH1 DH1 . C 3 NDP A 1 188 188 NDP COE . D 4 SO4 A 1 189 1 SO4 SO4 . E 4 SO4 A 1 190 2 SO4 SO4 . F 5 HOH A 1 191 1 HOH HOH . F 5 HOH A 2 192 2 HOH HOH . F 5 HOH A 3 193 3 HOH HOH . F 5 HOH A 4 194 4 HOH HOH . F 5 HOH A 5 195 5 HOH HOH . F 5 HOH A 6 196 6 HOH HOH . F 5 HOH A 7 197 7 HOH HOH . F 5 HOH A 8 198 8 HOH HOH . F 5 HOH A 9 199 9 HOH HOH . F 5 HOH A 10 200 10 HOH HOH . F 5 HOH A 11 201 11 HOH HOH . F 5 HOH A 12 202 12 HOH HOH . F 5 HOH A 13 203 13 HOH HOH . F 5 HOH A 14 204 14 HOH HOH . F 5 HOH A 15 205 15 HOH HOH . F 5 HOH A 16 206 16 HOH HOH . F 5 HOH A 17 207 17 HOH HOH . F 5 HOH A 18 208 18 HOH HOH . F 5 HOH A 19 209 19 HOH HOH . F 5 HOH A 20 210 20 HOH HOH . F 5 HOH A 21 211 21 HOH HOH . F 5 HOH A 22 212 22 HOH HOH . F 5 HOH A 23 213 23 HOH HOH . F 5 HOH A 24 214 24 HOH HOH . F 5 HOH A 25 215 25 HOH HOH . F 5 HOH A 26 216 26 HOH HOH . F 5 HOH A 27 217 27 HOH HOH . F 5 HOH A 28 218 28 HOH HOH . F 5 HOH A 29 219 29 HOH HOH . F 5 HOH A 30 220 30 HOH HOH . F 5 HOH A 31 221 31 HOH HOH . F 5 HOH A 32 222 32 HOH HOH . F 5 HOH A 33 223 33 HOH HOH . F 5 HOH A 34 224 34 HOH HOH . F 5 HOH A 35 225 35 HOH HOH . F 5 HOH A 36 226 36 HOH HOH . F 5 HOH A 37 227 37 HOH HOH . F 5 HOH A 38 228 38 HOH HOH . F 5 HOH A 39 229 39 HOH HOH . F 5 HOH A 40 230 40 HOH HOH . F 5 HOH A 41 231 41 HOH HOH . F 5 HOH A 42 232 42 HOH HOH . F 5 HOH A 43 233 43 HOH HOH . F 5 HOH A 44 234 44 HOH HOH . F 5 HOH A 45 235 45 HOH HOH . F 5 HOH A 46 236 46 HOH HOH . F 5 HOH A 47 237 47 HOH HOH . F 5 HOH A 48 238 48 HOH HOH . F 5 HOH A 49 239 49 HOH HOH . F 5 HOH A 50 240 50 HOH HOH . F 5 HOH A 51 241 51 HOH HOH . F 5 HOH A 52 242 52 HOH HOH . F 5 HOH A 53 243 53 HOH HOH . F 5 HOH A 54 244 54 HOH HOH . F 5 HOH A 55 245 55 HOH HOH . F 5 HOH A 56 246 56 HOH HOH . F 5 HOH A 57 247 57 HOH HOH . F 5 HOH A 58 248 58 HOH HOH . F 5 HOH A 59 249 59 HOH HOH . F 5 HOH A 60 250 60 HOH HOH . F 5 HOH A 61 251 61 HOH HOH . F 5 HOH A 62 252 62 HOH HOH . F 5 HOH A 63 253 63 HOH HOH . F 5 HOH A 64 254 64 HOH HOH . F 5 HOH A 65 255 65 HOH HOH . F 5 HOH A 66 256 66 HOH HOH . F 5 HOH A 67 257 67 HOH HOH . F 5 HOH A 68 258 68 HOH HOH . F 5 HOH A 69 259 69 HOH HOH . F 5 HOH A 70 260 70 HOH HOH . F 5 HOH A 71 261 71 HOH HOH . F 5 HOH A 72 262 72 HOH HOH . F 5 HOH A 73 263 73 HOH HOH . F 5 HOH A 74 264 74 HOH HOH . F 5 HOH A 75 265 75 HOH HOH . F 5 HOH A 76 266 76 HOH HOH . F 5 HOH A 77 267 77 HOH HOH . F 5 HOH A 78 268 78 HOH HOH . F 5 HOH A 79 269 79 HOH HOH . F 5 HOH A 80 270 80 HOH HOH . F 5 HOH A 81 271 81 HOH HOH . F 5 HOH A 82 272 82 HOH HOH . F 5 HOH A 83 273 83 HOH HOH . F 5 HOH A 84 274 84 HOH HOH . F 5 HOH A 85 275 85 HOH HOH . F 5 HOH A 86 276 86 HOH HOH . F 5 HOH A 87 277 87 HOH HOH . F 5 HOH A 88 278 88 HOH HOH . F 5 HOH A 89 279 89 HOH HOH . F 5 HOH A 90 280 90 HOH HOH . F 5 HOH A 91 281 91 HOH HOH . F 5 HOH A 92 282 92 HOH HOH . F 5 HOH A 93 283 93 HOH HOH . F 5 HOH A 94 284 94 HOH HOH . F 5 HOH A 95 285 95 HOH HOH . F 5 HOH A 96 286 96 HOH HOH . F 5 HOH A 97 287 97 HOH HOH . F 5 HOH A 98 288 98 HOH HOH . F 5 HOH A 99 289 99 HOH HOH . F 5 HOH A 100 290 100 HOH HOH . F 5 HOH A 101 291 101 HOH HOH . F 5 HOH A 102 292 102 HOH HOH . F 5 HOH A 103 293 103 HOH HOH . F 5 HOH A 104 294 104 HOH HOH . F 5 HOH A 105 295 105 HOH HOH . F 5 HOH A 106 296 106 HOH HOH . F 5 HOH A 107 297 107 HOH HOH . F 5 HOH A 108 298 108 HOH HOH . F 5 HOH A 109 299 109 HOH HOH . F 5 HOH A 110 300 110 HOH HOH . F 5 HOH A 111 301 111 HOH HOH . F 5 HOH A 112 302 112 HOH HOH . F 5 HOH A 113 303 113 HOH HOH . F 5 HOH A 114 304 114 HOH HOH . F 5 HOH A 115 305 115 HOH HOH . F 5 HOH A 116 306 116 HOH HOH . F 5 HOH A 117 307 117 HOH HOH . F 5 HOH A 118 308 118 HOH HOH . F 5 HOH A 119 309 119 HOH HOH . F 5 HOH A 120 310 120 HOH HOH . F 5 HOH A 121 311 121 HOH HOH . F 5 HOH A 122 312 122 HOH HOH . F 5 HOH A 123 313 123 HOH HOH . F 5 HOH A 124 314 124 HOH HOH . F 5 HOH A 125 315 125 HOH HOH . F 5 HOH A 126 316 126 HOH HOH . F 5 HOH A 127 317 127 HOH HOH . F 5 HOH A 128 318 128 HOH HOH . F 5 HOH A 129 319 129 HOH HOH . F 5 HOH A 130 320 130 HOH HOH . F 5 HOH A 131 321 131 HOH HOH . F 5 HOH A 132 322 132 HOH HOH . F 5 HOH A 133 323 133 HOH HOH . F 5 HOH A 134 324 134 HOH HOH . F 5 HOH A 135 325 135 HOH HOH . F 5 HOH A 136 326 136 HOH HOH . F 5 HOH A 137 327 137 HOH HOH . F 5 HOH A 138 328 138 HOH HOH . F 5 HOH A 139 329 139 HOH HOH . F 5 HOH A 140 330 140 HOH HOH . F 5 HOH A 141 331 141 HOH HOH . F 5 HOH A 142 332 142 HOH HOH . F 5 HOH A 143 333 143 HOH HOH . F 5 HOH A 144 334 144 HOH HOH . F 5 HOH A 145 335 145 HOH HOH . F 5 HOH A 146 336 146 HOH HOH . F 5 HOH A 147 337 147 HOH HOH . F 5 HOH A 148 338 148 HOH HOH . F 5 HOH A 149 339 149 HOH HOH . F 5 HOH A 150 340 150 HOH HOH . F 5 HOH A 151 341 151 HOH HOH . F 5 HOH A 152 342 152 HOH HOH . F 5 HOH A 153 343 153 HOH HOH . F 5 HOH A 154 344 154 HOH HOH . F 5 HOH A 155 345 155 HOH HOH . F 5 HOH A 156 346 156 HOH HOH . F 5 HOH A 157 347 157 HOH HOH . F 5 HOH A 158 348 158 HOH HOH . F 5 HOH A 159 349 159 HOH HOH . F 5 HOH A 160 350 160 HOH HOH . F 5 HOH A 161 351 161 HOH HOH . F 5 HOH A 162 352 162 HOH HOH . F 5 HOH A 163 353 163 HOH HOH . F 5 HOH A 164 354 164 HOH HOH . F 5 HOH A 165 355 165 HOH HOH . F 5 HOH A 166 356 166 HOH HOH . F 5 HOH A 167 357 167 HOH HOH . F 5 HOH A 168 358 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 3 -6.024 22.586 10.114 1 8.64 ? PA NDP 188 A 1 HETATM 2 O O1A NDP . . . C 3 -5.085 21.626 9.539 1 8.94 ? O1A NDP 188 A 1 HETATM 3 O O2A NDP . . . C 3 -5.917 24.027 9.818 1 11.03 ? O2A NDP 188 A 1 HETATM 4 O O5B NDP . . . C 3 -5.939 22.325 11.669 1 8.88 ? O5B NDP 188 A 1 HETATM 5 C C5B NDP . . . C 3 -6.682 23.131 12.534 1 12.99 ? C5B NDP 188 A 1 HETATM 6 C C4B NDP . . . C 3 -5.867 23.053 13.781 1 14.48 ? C4B NDP 188 A 1 HETATM 7 O O4B NDP . . . C 3 -4.441 23.393 13.465 1 14.1 ? O4B NDP 188 A 1 HETATM 8 C C3B NDP . . . C 3 -6.23 24.034 14.863 1 17.07 ? C3B NDP 188 A 1 HETATM 9 O O3B NDP . . . C 3 -7.342 23.551 15.59 1 14.72 ? O3B NDP 188 A 1 HETATM 10 C C2B NDP . . . C 3 -4.951 23.615 15.531 1 18.24 ? C2B NDP 188 A 1 HETATM 11 O O2B NDP . . . C 3 -4.798 24.202 16.689 1 17.14 ? O2B NDP 188 A 1 HETATM 12 C C1B NDP . . . C 3 -3.952 24.208 14.524 1 15.01 ? C1B NDP 188 A 1 HETATM 13 N N9A NDP . . . C 3 -3.736 25.614 13.809 1 16.08 ? N9A NDP 188 A 1 HETATM 14 C C8A NDP . . . C 3 -4.252 26.017 12.631 1 15.58 ? C8A NDP 188 A 1 HETATM 15 N N7A NDP . . . C 3 -3.774 27.223 12.298 1 16.57 ? N7A NDP 188 A 1 HETATM 16 C C5A NDP . . . C 3 -2.905 27.594 13.237 1 16.26 ? C5A NDP 188 A 1 HETATM 17 C C6A NDP . . . C 3 -2.108 28.719 13.451 1 15.76 ? C6A NDP 188 A 1 HETATM 18 N N6A NDP . . . C 3 -2.068 29.775 12.595 1 15.92 ? N6A NDP 188 A 1 HETATM 19 N N1A NDP . . . C 3 -1.348 28.747 14.558 1 15.65 ? N1A NDP 188 A 1 HETATM 20 C C2A NDP . . . C 3 -1.325 27.759 15.451 1 16.06 ? C2A NDP 188 A 1 HETATM 21 N N3A NDP . . . C 3 -2.09 26.685 15.277 1 14.12 ? N3A NDP 188 A 1 HETATM 22 C C4A NDP . . . C 3 -2.887 26.571 14.198 1 15.46 ? C4A NDP 188 A 1 HETATM 23 O O3 NDP . . . C 3 -7.534 22.026 9.971 1 10.93 ? O3 NDP 188 A 1 HETATM 24 P PN NDP . . . C 3 -8.744 22.097 8.869 1 14.57 ? PN NDP 188 A 1 HETATM 25 O O1N NDP . . . C 3 -8.788 23.356 8.063 1 12.21 ? O1N NDP 188 A 1 HETATM 26 O O2N NDP . . . C 3 -9.964 21.686 9.584 1 16.43 ? O2N NDP 188 A 1 HETATM 27 O O5D NDP . . . C 3 -8.396 20.7 8.135 1 16.24 ? O5D NDP 188 A 1 HETATM 28 C C5D NDP . . . C 3 -8.232 20.484 6.853 1 17.34 ? C5D NDP 188 A 1 HETATM 29 C C4D NDP . . . C 3 -9.197 19.37 6.359 1 15.81 ? C4D NDP 188 A 1 HETATM 30 O O4D NDP . . . C 3 -8.941 19.686 4.983 1 14.9 ? O4D NDP 188 A 1 HETATM 31 C C3D NDP . . . C 3 -8.998 17.835 6.474 1 15.84 ? C3D NDP 188 A 1 HETATM 32 O O3D NDP . . . C 3 -10.241 17.229 6.047 1 10.07 ? O3D NDP 188 A 1 HETATM 33 C C2D NDP . . . C 3 -7.936 17.55 5.412 1 15.62 ? C2D NDP 188 A 1 HETATM 34 O O2D NDP . . . C 3 -8.114 16.25 4.826 1 15.05 ? O2D NDP 188 A 1 HETATM 35 C C1D NDP . . . C 3 -8.314 18.553 4.324 1 13.53 ? C1D NDP 188 A 1 HETATM 36 N N1N NDP . . . C 3 -7.204 19.168 3.557 1 14.07 ? N1N NDP 188 A 1 HETATM 37 C C2N NDP . . . C 3 -7.322 19.147 2.175 1 13.19 ? C2N NDP 188 A 1 HETATM 38 C C3N NDP . . . C 3 -6.339 19.719 1.392 1 12.76 ? C3N NDP 188 A 1 HETATM 39 C C7N NDP . . . C 3 -6.537 19.7 -0.122 1 11.5 ? C7N NDP 188 A 1 HETATM 40 O O7N NDP . . . C 3 -5.684 20.199 -0.812 1 9.49 ? O7N NDP 188 A 1 HETATM 41 N N7N NDP . . . C 3 -7.68 19.172 -0.61 1 12.72 ? N7N NDP 188 A 1 HETATM 42 C C4N NDP . . . C 3 -5.207 20.308 2.001 1 11.95 ? C4N NDP 188 A 1 HETATM 43 C C5N NDP . . . C 3 -5.078 20.345 3.404 1 14.35 ? C5N NDP 188 A 1 HETATM 44 C C6N NDP . . . C 3 -6.068 19.771 4.2 1 13.09 ? C6N NDP 188 A 1 HETATM 45 P P2B NDP . . . C 3 -4.666 23.734 18.182 1 9.72 ? P2B NDP 188 A 1 HETATM 46 O O1X NDP . . . C 3 -3.883 22.405 18.572 1 12.14 ? O1X NDP 188 A 1 HETATM 47 O O2X NDP . . . C 3 -6.204 23.727 18.67 1 7.28 ? O2X NDP 188 A 1 HETATM 48 O O3X NDP . . . C 3 -4.079 25.028 18.546 1 7.36 ? O3X NDP 188 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #