data_3F9B # _model_server_result.job_id gnOChPJ-yvkiSKNbG9jbAQ _model_server_result.datetime_utc '2024-10-12 19:21:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 3F9B # _exptl.entry_id 3F9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F9B _cell.length_a 54.196 _cell.length_b 58.191 _cell.length_c 90.347 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3F9B _atom_sites.fract_transf_matrix[1][1] 0.018452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VO4 A 1 501 501 VO4 VO4 . C 3 PDV A 1 502 502 PDV PDV . D 4 GOL A 1 503 503 GOL GOL . E 4 GOL A 1 504 504 GOL GOL . F 5 HOH A 1 1 1 HOH HOH . F 5 HOH A 2 2 2 HOH HOH . F 5 HOH A 3 3 3 HOH HOH . F 5 HOH A 4 4 4 HOH HOH . F 5 HOH A 5 5 5 HOH HOH . F 5 HOH A 6 6 6 HOH HOH . F 5 HOH A 7 7 7 HOH HOH . F 5 HOH A 8 8 8 HOH HOH . F 5 HOH A 9 9 9 HOH HOH . F 5 HOH A 10 10 10 HOH HOH . F 5 HOH A 11 11 11 HOH HOH . F 5 HOH A 12 12 12 HOH HOH . F 5 HOH A 13 13 13 HOH HOH . F 5 HOH A 14 14 14 HOH HOH . F 5 HOH A 15 15 15 HOH HOH . F 5 HOH A 16 16 16 HOH HOH . F 5 HOH A 17 17 17 HOH HOH . F 5 HOH A 18 18 18 HOH HOH . F 5 HOH A 19 19 19 HOH HOH . F 5 HOH A 20 20 20 HOH HOH . F 5 HOH A 21 21 21 HOH HOH . F 5 HOH A 22 22 22 HOH HOH . F 5 HOH A 23 23 23 HOH HOH . F 5 HOH A 24 24 24 HOH HOH . F 5 HOH A 25 25 25 HOH HOH . F 5 HOH A 26 26 26 HOH HOH . F 5 HOH A 27 27 27 HOH HOH . F 5 HOH A 28 28 28 HOH HOH . F 5 HOH A 29 29 29 HOH HOH . F 5 HOH A 30 30 30 HOH HOH . F 5 HOH A 31 31 31 HOH HOH . F 5 HOH A 32 32 32 HOH HOH . F 5 HOH A 33 33 33 HOH HOH . F 5 HOH A 34 34 34 HOH HOH . F 5 HOH A 35 35 35 HOH HOH . F 5 HOH A 36 36 36 HOH HOH . F 5 HOH A 37 37 37 HOH HOH . F 5 HOH A 38 38 38 HOH HOH . F 5 HOH A 39 39 39 HOH HOH . F 5 HOH A 40 40 40 HOH HOH . F 5 HOH A 41 41 41 HOH HOH . F 5 HOH A 42 42 42 HOH HOH . F 5 HOH A 43 43 43 HOH HOH . F 5 HOH A 44 44 44 HOH HOH . F 5 HOH A 45 45 45 HOH HOH . F 5 HOH A 46 46 46 HOH HOH . F 5 HOH A 47 47 47 HOH HOH . F 5 HOH A 48 48 48 HOH HOH . F 5 HOH A 49 49 49 HOH HOH . F 5 HOH A 50 50 50 HOH HOH . F 5 HOH A 51 51 51 HOH HOH . F 5 HOH A 52 52 52 HOH HOH . F 5 HOH A 53 53 53 HOH HOH . F 5 HOH A 54 54 54 HOH HOH . F 5 HOH A 55 55 55 HOH HOH . F 5 HOH A 56 56 56 HOH HOH . F 5 HOH A 57 57 57 HOH HOH . F 5 HOH A 58 58 58 HOH HOH . F 5 HOH A 59 59 59 HOH HOH . F 5 HOH A 60 60 60 HOH HOH . F 5 HOH A 61 61 61 HOH HOH . F 5 HOH A 62 62 62 HOH HOH . F 5 HOH A 63 63 63 HOH HOH . F 5 HOH A 64 64 64 HOH HOH . F 5 HOH A 65 65 65 HOH HOH . F 5 HOH A 66 66 66 HOH HOH . F 5 HOH A 67 67 67 HOH HOH . F 5 HOH A 68 68 68 HOH HOH . F 5 HOH A 69 69 69 HOH HOH . F 5 HOH A 70 70 70 HOH HOH . F 5 HOH A 71 71 71 HOH HOH . F 5 HOH A 72 72 72 HOH HOH . F 5 HOH A 73 73 73 HOH HOH . F 5 HOH A 74 74 74 HOH HOH . F 5 HOH A 75 75 75 HOH HOH . F 5 HOH A 76 76 76 HOH HOH . F 5 HOH A 77 77 77 HOH HOH . F 5 HOH A 78 78 78 HOH HOH . F 5 HOH A 79 79 79 HOH HOH . F 5 HOH A 80 80 80 HOH HOH . F 5 HOH A 81 81 81 HOH HOH . F 5 HOH A 82 82 82 HOH HOH . F 5 HOH A 83 83 83 HOH HOH . F 5 HOH A 84 84 84 HOH HOH . F 5 HOH A 85 85 85 HOH HOH . F 5 HOH A 86 86 86 HOH HOH . F 5 HOH A 87 87 87 HOH HOH . F 5 HOH A 88 88 88 HOH HOH . F 5 HOH A 89 89 89 HOH HOH . F 5 HOH A 90 90 90 HOH HOH . F 5 HOH A 91 91 91 HOH HOH . F 5 HOH A 92 92 92 HOH HOH . F 5 HOH A 93 93 93 HOH HOH . F 5 HOH A 94 94 94 HOH HOH . F 5 HOH A 95 95 95 HOH HOH . F 5 HOH A 96 96 96 HOH HOH . F 5 HOH A 97 97 97 HOH HOH . F 5 HOH A 98 98 98 HOH HOH . F 5 HOH A 99 99 99 HOH HOH . F 5 HOH A 100 100 100 HOH HOH . F 5 HOH A 101 101 101 HOH HOH . F 5 HOH A 102 102 102 HOH HOH . F 5 HOH A 103 103 103 HOH HOH . F 5 HOH A 104 104 104 HOH HOH . F 5 HOH A 105 105 105 HOH HOH . F 5 HOH A 106 106 106 HOH HOH . F 5 HOH A 107 107 107 HOH HOH . F 5 HOH A 108 108 108 HOH HOH . F 5 HOH A 109 109 109 HOH HOH . F 5 HOH A 110 110 110 HOH HOH . F 5 HOH A 111 111 111 HOH HOH . F 5 HOH A 112 112 112 HOH HOH . F 5 HOH A 113 113 113 HOH HOH . F 5 HOH A 114 114 114 HOH HOH . F 5 HOH A 115 115 115 HOH HOH . F 5 HOH A 116 116 116 HOH HOH . F 5 HOH A 117 117 117 HOH HOH . F 5 HOH A 118 118 118 HOH HOH . F 5 HOH A 119 119 119 HOH HOH . F 5 HOH A 120 120 120 HOH HOH . F 5 HOH A 121 121 121 HOH HOH . F 5 HOH A 122 122 122 HOH HOH . F 5 HOH A 123 123 123 HOH HOH . F 5 HOH A 124 124 124 HOH HOH . F 5 HOH A 125 125 125 HOH HOH . F 5 HOH A 126 126 126 HOH HOH . F 5 HOH A 127 127 127 HOH HOH . F 5 HOH A 128 128 128 HOH HOH . F 5 HOH A 129 129 129 HOH HOH . F 5 HOH A 130 130 130 HOH HOH . F 5 HOH A 131 131 131 HOH HOH . F 5 HOH A 132 132 132 HOH HOH . F 5 HOH A 133 133 133 HOH HOH . F 5 HOH A 134 134 134 HOH HOH . F 5 HOH A 135 135 135 HOH HOH . F 5 HOH A 136 136 136 HOH HOH . F 5 HOH A 137 137 137 HOH HOH . F 5 HOH A 138 138 138 HOH HOH . F 5 HOH A 139 139 139 HOH HOH . F 5 HOH A 140 140 140 HOH HOH . F 5 HOH A 141 141 141 HOH HOH . F 5 HOH A 142 142 142 HOH HOH . F 5 HOH A 143 143 143 HOH HOH . F 5 HOH A 144 144 144 HOH HOH . F 5 HOH A 145 145 145 HOH HOH . F 5 HOH A 146 146 146 HOH HOH . F 5 HOH A 147 147 147 HOH HOH . F 5 HOH A 148 148 148 HOH HOH . F 5 HOH A 149 149 149 HOH HOH . F 5 HOH A 150 150 150 HOH HOH . F 5 HOH A 151 151 151 HOH HOH . F 5 HOH A 152 152 152 HOH HOH . F 5 HOH A 153 153 153 HOH HOH . F 5 HOH A 154 154 154 HOH HOH . F 5 HOH A 155 155 155 HOH HOH . F 5 HOH A 156 156 156 HOH HOH . F 5 HOH A 157 157 157 HOH HOH . F 5 HOH A 158 158 158 HOH HOH . F 5 HOH A 159 159 159 HOH HOH . F 5 HOH A 160 160 160 HOH HOH . F 5 HOH A 161 161 161 HOH HOH . F 5 HOH A 162 162 162 HOH HOH . F 5 HOH A 163 469 163 HOH HOH . F 5 HOH A 164 470 164 HOH HOH . F 5 HOH A 165 471 165 HOH HOH . F 5 HOH A 166 472 166 HOH HOH . F 5 HOH A 167 473 167 HOH HOH . F 5 HOH A 168 474 168 HOH HOH . F 5 HOH A 169 475 169 HOH HOH . F 5 HOH A 170 476 170 HOH HOH . F 5 HOH A 171 477 171 HOH HOH . F 5 HOH A 172 478 172 HOH HOH . F 5 HOH A 173 479 173 HOH HOH . F 5 HOH A 174 480 174 HOH HOH . F 5 HOH A 175 481 175 HOH HOH . F 5 HOH A 176 482 176 HOH HOH . F 5 HOH A 177 483 177 HOH HOH . F 5 HOH A 178 484 178 HOH HOH . F 5 HOH A 179 485 179 HOH HOH . F 5 HOH A 180 486 180 HOH HOH . F 5 HOH A 181 487 181 HOH HOH . F 5 HOH A 182 488 182 HOH HOH . F 5 HOH A 183 489 183 HOH HOH . F 5 HOH A 184 490 184 HOH HOH . F 5 HOH A 185 491 185 HOH HOH . F 5 HOH A 186 492 186 HOH HOH . F 5 HOH A 187 493 187 HOH HOH . F 5 HOH A 188 494 188 HOH HOH . F 5 HOH A 189 495 189 HOH HOH . F 5 HOH A 190 496 190 HOH HOH . F 5 HOH A 191 497 191 HOH HOH . F 5 HOH A 192 498 192 HOH HOH . F 5 HOH A 193 499 193 HOH HOH . F 5 HOH A 194 500 194 HOH HOH . F 5 HOH A 195 505 195 HOH HOH . F 5 HOH A 196 506 196 HOH HOH . F 5 HOH A 197 507 197 HOH HOH . F 5 HOH A 198 508 198 HOH HOH . F 5 HOH A 199 509 199 HOH HOH . F 5 HOH A 200 510 200 HOH HOH . F 5 HOH A 201 511 201 HOH HOH . F 5 HOH A 202 512 202 HOH HOH . F 5 HOH A 203 513 203 HOH HOH . F 5 HOH A 204 514 204 HOH HOH . F 5 HOH A 205 515 205 HOH HOH . F 5 HOH A 206 516 206 HOH HOH . F 5 HOH A 207 517 207 HOH HOH . F 5 HOH A 208 518 208 HOH HOH . F 5 HOH A 209 519 209 HOH HOH . F 5 HOH A 210 520 210 HOH HOH . F 5 HOH A 211 521 211 HOH HOH . F 5 HOH A 212 522 212 HOH HOH . F 5 HOH A 213 523 213 HOH HOH . F 5 HOH A 214 524 214 HOH HOH . F 5 HOH A 215 525 215 HOH HOH . F 5 HOH A 216 526 216 HOH HOH . F 5 HOH A 217 527 217 HOH HOH . F 5 HOH A 218 528 218 HOH HOH . F 5 HOH A 219 529 219 HOH HOH . F 5 HOH A 220 530 220 HOH HOH . F 5 HOH A 221 531 221 HOH HOH . F 5 HOH A 222 532 222 HOH HOH . F 5 HOH A 223 533 223 HOH HOH . F 5 HOH A 224 534 224 HOH HOH . F 5 HOH A 225 535 225 HOH HOH . F 5 HOH A 226 536 226 HOH HOH . F 5 HOH A 227 537 227 HOH HOH . F 5 HOH A 228 538 228 HOH HOH . F 5 HOH A 229 539 229 HOH HOH . F 5 HOH A 230 540 230 HOH HOH . F 5 HOH A 231 541 231 HOH HOH . F 5 HOH A 232 542 232 HOH HOH . F 5 HOH A 233 543 233 HOH HOH . F 5 HOH A 234 544 234 HOH HOH . F 5 HOH A 235 545 235 HOH HOH . F 5 HOH A 236 546 236 HOH HOH . F 5 HOH A 237 547 237 HOH HOH . F 5 HOH A 238 548 238 HOH HOH . F 5 HOH A 239 549 239 HOH HOH . F 5 HOH A 240 550 240 HOH HOH . F 5 HOH A 241 551 241 HOH HOH . F 5 HOH A 242 552 242 HOH HOH . F 5 HOH A 243 553 243 HOH HOH . F 5 HOH A 244 554 244 HOH HOH . F 5 HOH A 245 555 245 HOH HOH . F 5 HOH A 246 556 246 HOH HOH . F 5 HOH A 247 557 247 HOH HOH . F 5 HOH A 248 558 248 HOH HOH . F 5 HOH A 249 559 249 HOH HOH . F 5 HOH A 250 560 250 HOH HOH . F 5 HOH A 251 561 251 HOH HOH . F 5 HOH A 252 562 252 HOH HOH . F 5 HOH A 253 563 253 HOH HOH . F 5 HOH A 254 564 254 HOH HOH . F 5 HOH A 255 565 255 HOH HOH . F 5 HOH A 256 566 256 HOH HOH . F 5 HOH A 257 567 257 HOH HOH . F 5 HOH A 258 568 258 HOH HOH . F 5 HOH A 259 569 259 HOH HOH . F 5 HOH A 260 570 260 HOH HOH . F 5 HOH A 261 571 261 HOH HOH . F 5 HOH A 262 572 262 HOH HOH . F 5 HOH A 263 573 263 HOH HOH . F 5 HOH A 264 574 264 HOH HOH . F 5 HOH A 265 575 265 HOH HOH . F 5 HOH A 266 576 266 HOH HOH . F 5 HOH A 267 577 267 HOH HOH . F 5 HOH A 268 578 268 HOH HOH . F 5 HOH A 269 579 269 HOH HOH . F 5 HOH A 270 580 270 HOH HOH . F 5 HOH A 271 581 271 HOH HOH . F 5 HOH A 272 582 272 HOH HOH . F 5 HOH A 273 583 273 HOH HOH . F 5 HOH A 274 584 274 HOH HOH . F 5 HOH A 275 585 275 HOH HOH . F 5 HOH A 276 586 276 HOH HOH . F 5 HOH A 277 587 277 HOH HOH . F 5 HOH A 278 588 278 HOH HOH . F 5 HOH A 279 589 279 HOH HOH . F 5 HOH A 280 590 280 HOH HOH . F 5 HOH A 281 591 281 HOH HOH . F 5 HOH A 282 592 282 HOH HOH . F 5 HOH A 283 593 283 HOH HOH . F 5 HOH A 284 594 284 HOH HOH . F 5 HOH A 285 595 285 HOH HOH . F 5 HOH A 286 596 286 HOH HOH . F 5 HOH A 287 597 287 HOH HOH . F 5 HOH A 288 598 288 HOH HOH . F 5 HOH A 289 599 289 HOH HOH . F 5 HOH A 290 600 290 HOH HOH . F 5 HOH A 291 601 291 HOH HOH . F 5 HOH A 292 602 292 HOH HOH . F 5 HOH A 293 603 293 HOH HOH . F 5 HOH A 294 604 294 HOH HOH . F 5 HOH A 295 605 295 HOH HOH . F 5 HOH A 296 606 296 HOH HOH . F 5 HOH A 297 607 297 HOH HOH . F 5 HOH A 298 608 298 HOH HOH . F 5 HOH A 299 609 299 HOH HOH . F 5 HOH A 300 610 300 HOH HOH . F 5 HOH A 301 611 301 HOH HOH . F 5 HOH A 302 612 302 HOH HOH . F 5 HOH A 303 613 303 HOH HOH . F 5 HOH A 304 614 304 HOH HOH . F 5 HOH A 305 615 305 HOH HOH . F 5 HOH A 306 616 306 HOH HOH . F 5 HOH A 307 617 307 HOH HOH . F 5 HOH A 308 618 308 HOH HOH . F 5 HOH A 309 619 309 HOH HOH . F 5 HOH A 310 620 310 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 4.753 27.98 4.681 1 89.67 ? C1 GOL 504 A 1 HETATM 2 O O1 GOL . . . E 4 5.764 28.188 3.72 1 89.49 ? O1 GOL 504 A 1 HETATM 3 C C2 GOL . . . E 4 4.588 29.233 5.532 1 89.79 ? C2 GOL 504 A 1 HETATM 4 O O2 GOL . . . E 4 3.218 29.562 5.608 1 89.92 ? O2 GOL 504 A 1 HETATM 5 C C3 GOL . . . E 4 5.127 28.965 6.933 1 89.82 ? C3 GOL 504 A 1 HETATM 6 O O3 GOL . . . E 4 4.916 30.093 7.752 1 89.94 ? O3 GOL 504 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #