data_3F9U # _model_server_result.job_id goM2Fs9BETDYBKn4Ur1Jvw _model_server_result.datetime_utc '2024-11-05 00:30:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3f9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":702}' # _entry.id 3F9U # _exptl.entry_id 3F9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3F9U _cell.length_a 64.16 _cell.length_b 64.16 _cell.length_c 181.555 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3F9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 556 1_555 A SG CYS 62 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? disulf ? disulf2 B SG CYS 59 B CYS 556 1_555 B SG CYS 62 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? covale ? covale1 A C GLY 39 A GLY 536 1_555 A N MSE 40 A MSE 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 40 A MSE 537 1_555 A N GLU 41 A GLU 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C VAL 50 A VAL 547 1_555 A N MSE 51 A MSE 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 51 A MSE 548 1_555 A N LEU 52 A LEU 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale5 A C LYS 64 A LYS 561 1_555 A N MSE 65 A MSE 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 65 A MSE 562 1_555 A N GLU 66 A GLU 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C ILE 102 A ILE 599 1_555 A N MSE 103 A MSE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 103 A MSE 600 1_555 A N GLU 104 A GLU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 B C GLY 39 B GLY 536 1_555 B N MSE 40 B MSE 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C MSE 40 B MSE 537 1_555 B N GLU 41 B GLU 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 B C VAL 50 B VAL 547 1_555 B N MSE 51 B MSE 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale12 B C MSE 51 B MSE 548 1_555 B N LEU 52 B LEU 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 B C LYS 64 B LYS 561 1_555 B N MSE 65 B MSE 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale14 B C MSE 65 B MSE 562 1_555 B N GLU 66 B GLU 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 B C ILE 102 B ILE 599 1_555 B N MSE 103 B MSE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 B C MSE 103 B MSE 600 1_555 B N GLU 104 B GLU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 246 n n N O2 NO3 sing 247 n n N O3 NO3 sing 248 n n # _atom_sites.entry_id 3F9U _atom_sites.fract_transf_matrix[1][1] 0.015586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NO3 A 1 701 701 NO3 NO3 . D 2 NO3 A 1 702 702 NO3 NO3 . E 3 EDO A 1 703 703 EDO EDO . F 2 NO3 A 1 704 704 NO3 NO3 . G 3 EDO A 1 670 701 EDO EDO . H 2 NO3 A 1 671 703 NO3 NO3 . I 2 NO3 B 1 702 702 NO3 NO3 . J 4 HOH A 1 4 4 HOH HOH . J 4 HOH A 2 5 5 HOH HOH . J 4 HOH A 3 6 6 HOH HOH . J 4 HOH A 4 7 7 HOH HOH . J 4 HOH A 5 11 11 HOH HOH . J 4 HOH A 6 12 12 HOH HOH . J 4 HOH A 7 15 15 HOH HOH . J 4 HOH A 8 19 19 HOH HOH . J 4 HOH A 9 20 20 HOH HOH . J 4 HOH A 10 23 23 HOH HOH . J 4 HOH A 11 27 27 HOH HOH . J 4 HOH A 12 35 35 HOH HOH . J 4 HOH A 13 36 36 HOH HOH . J 4 HOH A 14 38 38 HOH HOH . J 4 HOH A 15 39 39 HOH HOH . J 4 HOH A 16 40 40 HOH HOH . J 4 HOH A 17 41 41 HOH HOH . J 4 HOH A 18 44 44 HOH HOH . J 4 HOH A 19 45 45 HOH HOH . J 4 HOH A 20 47 47 HOH HOH . J 4 HOH A 21 51 51 HOH HOH . J 4 HOH A 22 53 53 HOH HOH . J 4 HOH A 23 55 55 HOH HOH . J 4 HOH A 24 57 57 HOH HOH . J 4 HOH A 25 58 58 HOH HOH . J 4 HOH A 26 59 59 HOH HOH . J 4 HOH A 27 60 60 HOH HOH . J 4 HOH A 28 61 61 HOH HOH . J 4 HOH A 29 62 62 HOH HOH . J 4 HOH A 30 63 63 HOH HOH . J 4 HOH A 31 64 64 HOH HOH . J 4 HOH A 32 65 65 HOH HOH . J 4 HOH A 33 66 66 HOH HOH . J 4 HOH A 34 69 69 HOH HOH . J 4 HOH A 35 81 81 HOH HOH . J 4 HOH A 36 83 83 HOH HOH . J 4 HOH A 37 85 85 HOH HOH . J 4 HOH A 38 86 86 HOH HOH . J 4 HOH A 39 89 89 HOH HOH . J 4 HOH A 40 90 90 HOH HOH . J 4 HOH A 41 92 92 HOH HOH . J 4 HOH A 42 93 93 HOH HOH . J 4 HOH A 43 95 95 HOH HOH . J 4 HOH A 44 97 97 HOH HOH . J 4 HOH A 45 99 99 HOH HOH . J 4 HOH A 46 103 103 HOH HOH . J 4 HOH A 47 106 106 HOH HOH . J 4 HOH A 48 107 107 HOH HOH . J 4 HOH A 49 108 108 HOH HOH . J 4 HOH A 50 112 112 HOH HOH . J 4 HOH A 51 113 113 HOH HOH . J 4 HOH A 52 114 114 HOH HOH . J 4 HOH A 53 117 117 HOH HOH . J 4 HOH A 54 118 118 HOH HOH . J 4 HOH A 55 119 119 HOH HOH . J 4 HOH A 56 120 120 HOH HOH . J 4 HOH A 57 121 121 HOH HOH . J 4 HOH A 58 122 122 HOH HOH . J 4 HOH A 59 125 125 HOH HOH . J 4 HOH A 60 128 128 HOH HOH . J 4 HOH A 61 129 129 HOH HOH . J 4 HOH A 62 130 130 HOH HOH . J 4 HOH A 63 131 131 HOH HOH . J 4 HOH A 64 132 132 HOH HOH . J 4 HOH A 65 133 133 HOH HOH . J 4 HOH A 66 134 134 HOH HOH . J 4 HOH A 67 136 136 HOH HOH . J 4 HOH A 68 137 137 HOH HOH . J 4 HOH A 69 138 138 HOH HOH . J 4 HOH A 70 139 139 HOH HOH . J 4 HOH A 71 141 141 HOH HOH . J 4 HOH A 72 142 142 HOH HOH . J 4 HOH A 73 149 149 HOH HOH . J 4 HOH A 74 150 150 HOH HOH . J 4 HOH A 75 152 152 HOH HOH . J 4 HOH A 76 154 154 HOH HOH . J 4 HOH A 77 156 156 HOH HOH . J 4 HOH A 78 157 157 HOH HOH . J 4 HOH A 79 158 158 HOH HOH . J 4 HOH A 80 163 163 HOH HOH . J 4 HOH A 81 164 164 HOH HOH . J 4 HOH A 82 167 167 HOH HOH . J 4 HOH A 83 168 168 HOH HOH . J 4 HOH A 84 170 170 HOH HOH . J 4 HOH A 85 171 171 HOH HOH . J 4 HOH A 86 174 174 HOH HOH . J 4 HOH A 87 175 175 HOH HOH . J 4 HOH A 88 177 177 HOH HOH . J 4 HOH A 89 181 181 HOH HOH . J 4 HOH A 90 183 183 HOH HOH . J 4 HOH A 91 184 184 HOH HOH . J 4 HOH A 92 188 188 HOH HOH . K 4 HOH B 1 1 1 HOH HOH . K 4 HOH B 2 2 2 HOH HOH . K 4 HOH B 3 3 3 HOH HOH . K 4 HOH B 4 8 8 HOH HOH . K 4 HOH B 5 9 9 HOH HOH . K 4 HOH B 6 10 10 HOH HOH . K 4 HOH B 7 13 13 HOH HOH . K 4 HOH B 8 14 14 HOH HOH . K 4 HOH B 9 16 16 HOH HOH . K 4 HOH B 10 17 17 HOH HOH . K 4 HOH B 11 18 18 HOH HOH . K 4 HOH B 12 21 21 HOH HOH . K 4 HOH B 13 22 22 HOH HOH . K 4 HOH B 14 24 24 HOH HOH . K 4 HOH B 15 25 25 HOH HOH . K 4 HOH B 16 26 26 HOH HOH . K 4 HOH B 17 28 28 HOH HOH . K 4 HOH B 18 29 29 HOH HOH . K 4 HOH B 19 30 30 HOH HOH . K 4 HOH B 20 31 31 HOH HOH . K 4 HOH B 21 32 32 HOH HOH . K 4 HOH B 22 33 33 HOH HOH . K 4 HOH B 23 34 34 HOH HOH . K 4 HOH B 24 37 37 HOH HOH . K 4 HOH B 25 42 42 HOH HOH . K 4 HOH B 26 43 43 HOH HOH . K 4 HOH B 27 46 46 HOH HOH . K 4 HOH B 28 48 48 HOH HOH . K 4 HOH B 29 49 49 HOH HOH . K 4 HOH B 30 50 50 HOH HOH . K 4 HOH B 31 52 52 HOH HOH . K 4 HOH B 32 54 54 HOH HOH . K 4 HOH B 33 56 56 HOH HOH . K 4 HOH B 34 67 67 HOH HOH . K 4 HOH B 35 68 68 HOH HOH . K 4 HOH B 36 70 70 HOH HOH . K 4 HOH B 37 71 71 HOH HOH . K 4 HOH B 38 72 72 HOH HOH . K 4 HOH B 39 73 73 HOH HOH . K 4 HOH B 40 74 74 HOH HOH . K 4 HOH B 41 75 75 HOH HOH . K 4 HOH B 42 76 76 HOH HOH . K 4 HOH B 43 77 77 HOH HOH . K 4 HOH B 44 78 78 HOH HOH . K 4 HOH B 45 79 79 HOH HOH . K 4 HOH B 46 80 80 HOH HOH . K 4 HOH B 47 82 82 HOH HOH . K 4 HOH B 48 84 84 HOH HOH . K 4 HOH B 49 87 87 HOH HOH . K 4 HOH B 50 88 88 HOH HOH . K 4 HOH B 51 91 91 HOH HOH . K 4 HOH B 52 94 94 HOH HOH . K 4 HOH B 53 96 96 HOH HOH . K 4 HOH B 54 98 98 HOH HOH . K 4 HOH B 55 100 100 HOH HOH . K 4 HOH B 56 101 101 HOH HOH . K 4 HOH B 57 102 102 HOH HOH . K 4 HOH B 58 104 104 HOH HOH . K 4 HOH B 59 105 105 HOH HOH . K 4 HOH B 60 109 109 HOH HOH . K 4 HOH B 61 110 110 HOH HOH . K 4 HOH B 62 111 111 HOH HOH . K 4 HOH B 63 115 115 HOH HOH . K 4 HOH B 64 116 116 HOH HOH . K 4 HOH B 65 123 123 HOH HOH . K 4 HOH B 66 124 124 HOH HOH . K 4 HOH B 67 126 126 HOH HOH . K 4 HOH B 68 127 127 HOH HOH . K 4 HOH B 69 135 135 HOH HOH . K 4 HOH B 70 140 140 HOH HOH . K 4 HOH B 71 143 143 HOH HOH . K 4 HOH B 72 144 144 HOH HOH . K 4 HOH B 73 145 145 HOH HOH . K 4 HOH B 74 146 146 HOH HOH . K 4 HOH B 75 147 147 HOH HOH . K 4 HOH B 76 148 148 HOH HOH . K 4 HOH B 77 151 151 HOH HOH . K 4 HOH B 78 153 153 HOH HOH . K 4 HOH B 79 155 155 HOH HOH . K 4 HOH B 80 159 159 HOH HOH . K 4 HOH B 81 160 160 HOH HOH . K 4 HOH B 82 161 161 HOH HOH . K 4 HOH B 83 162 162 HOH HOH . K 4 HOH B 84 165 165 HOH HOH . K 4 HOH B 85 166 166 HOH HOH . K 4 HOH B 86 169 169 HOH HOH . K 4 HOH B 87 172 172 HOH HOH . K 4 HOH B 88 173 173 HOH HOH . K 4 HOH B 89 176 176 HOH HOH . K 4 HOH B 90 178 178 HOH HOH . K 4 HOH B 91 179 179 HOH HOH . K 4 HOH B 92 180 180 HOH HOH . K 4 HOH B 93 182 182 HOH HOH . K 4 HOH B 94 185 185 HOH HOH . K 4 HOH B 95 186 186 HOH HOH . K 4 HOH B 96 187 187 HOH HOH . K 4 HOH B 97 189 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . I 2 -4.286 35.419 86.352 1 75.12 ? N NO3 702 B 1 HETATM 2 O O1 NO3 . . . I 2 -5.351 34.58 86.721 1 74.25 ? O1 NO3 702 B 1 HETATM 3 O O2 NO3 . . . I 2 -2.973 34.921 86.279 1 75.15 ? O2 NO3 702 B 1 HETATM 4 O O3 NO3 . . . I 2 -4.527 36.774 86.064 1 75.39 ? O3 NO3 702 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #