data_3FBA # _model_server_result.job_id P2yDgDOmZ2sTSwZwLXOxNQ _model_server_result.datetime_utc '2024-11-29 20:20:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 3FBA # _exptl.entry_id 3FBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.209 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GERANYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FBA _cell.length_a 144.127 _cell.length_b 144.127 _cell.length_c 144.127 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_665 -z+3/2,-x+1,y+1/2 0 0 -1 -1 0 0 0 1 0 216.1905 144.127 72.0635 3 'crystal symmetry operation' 10_646 -y+1,z-1/2,-x+3/2 0 -1 0 0 0 1 -1 0 0 144.127 -72.0635 216.1905 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O PRO 109 A PRO 103 1_555 C N4 C6B . A C6B 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? covale ? covale2 A N MET 111 A MET 105 1_555 C N3 C6B . A C6B 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc1 A OD2 ASP 14 A ASP 8 1_555 B ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? # _chem_comp.formula 'C10 H20 O7 P2' _chem_comp.formula_weight 314.209 _chem_comp.id GPP _chem_comp.mon_nstd_flag . _chem_comp.name 'GERANYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GPP sing 178 n n C1 C2 GPP sing 179 n n C1 H11 GPP sing 180 n n C1 H12 GPP sing 181 n n O1 PA GPP sing 182 n n C2 C3 GPP doub 183 e n C2 H2 GPP sing 184 n n C3 C4 GPP sing 185 n n C3 C5 GPP sing 186 n n C4 H41 GPP sing 187 n n C4 H42 GPP sing 188 n n C4 H43 GPP sing 189 n n C5 C6 GPP sing 190 n n C5 H51 GPP sing 191 n n C5 H52 GPP sing 192 n n C6 C7 GPP sing 193 n n C6 H61 GPP sing 194 n n C6 H62 GPP sing 195 n n C7 C8 GPP doub 196 n n C7 H7 GPP sing 197 n n C8 C9 GPP sing 198 n n C8 C10 GPP sing 199 n n C9 H91 GPP sing 200 n n C9 H92 GPP sing 201 n n C9 H93 GPP sing 202 n n C10 H101 GPP sing 203 n n C10 H102 GPP sing 204 n n C10 H103 GPP sing 205 n n PA O1A GPP doub 206 n n PA O2A GPP sing 207 n n PA O3A GPP sing 208 n n O2A HOA2 GPP sing 209 n n O3A PB GPP sing 210 n n PB O1B GPP doub 211 n n PB O2B GPP sing 212 n n PB O3B GPP sing 213 n n O2B HOB2 GPP sing 214 n n O3B HOB3 GPP sing 215 n n # _atom_sites.entry_id 3FBA _atom_sites.fract_transf_matrix[1][1] 0.006938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 900 900 ZN ZN . C 3 C6B A 1 901 901 C6B C6B . D 4 GPP A 1 903 903 GPP GPP . E 5 GOL A 1 904 904 GOL GOL . F 6 HOH A 1 160 1 HOH HOH . F 6 HOH A 2 161 2 HOH HOH . F 6 HOH A 3 162 3 HOH HOH . F 6 HOH A 4 163 4 HOH HOH . F 6 HOH A 5 164 5 HOH HOH . F 6 HOH A 6 165 6 HOH HOH . F 6 HOH A 7 166 7 HOH HOH . F 6 HOH A 8 167 8 HOH HOH . F 6 HOH A 9 168 9 HOH HOH . F 6 HOH A 10 169 10 HOH HOH . F 6 HOH A 11 170 11 HOH HOH . F 6 HOH A 12 171 12 HOH HOH . F 6 HOH A 13 172 13 HOH HOH . F 6 HOH A 14 173 14 HOH HOH . F 6 HOH A 15 174 15 HOH HOH . F 6 HOH A 16 175 16 HOH HOH . F 6 HOH A 17 176 17 HOH HOH . F 6 HOH A 18 177 18 HOH HOH . F 6 HOH A 19 178 19 HOH HOH . F 6 HOH A 20 179 20 HOH HOH . F 6 HOH A 21 180 21 HOH HOH . F 6 HOH A 22 181 22 HOH HOH . F 6 HOH A 23 182 23 HOH HOH . F 6 HOH A 24 183 24 HOH HOH . F 6 HOH A 25 184 25 HOH HOH . F 6 HOH A 26 185 26 HOH HOH . F 6 HOH A 27 186 27 HOH HOH . F 6 HOH A 28 187 28 HOH HOH . F 6 HOH A 29 188 29 HOH HOH . F 6 HOH A 30 189 30 HOH HOH . F 6 HOH A 31 190 31 HOH HOH . F 6 HOH A 32 191 32 HOH HOH . F 6 HOH A 33 192 33 HOH HOH . F 6 HOH A 34 193 34 HOH HOH . F 6 HOH A 35 194 35 HOH HOH . F 6 HOH A 36 195 36 HOH HOH . F 6 HOH A 37 196 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GPP . . . D 4 95.404 48.908 122.334 0.33 54.16 ? C1 GPP 903 A 1 HETATM 2 O O1 GPP . . . D 4 96.35 49.173 121.282 0.33 55.35 ? O1 GPP 903 A 1 HETATM 3 C C2 GPP . . . D 4 95.041 50.046 123.046 0.33 52.47 ? C2 GPP 903 A 1 HETATM 4 C C3 GPP . . . D 4 95.25 50.231 124.399 0.33 50.91 ? C3 GPP 903 A 1 HETATM 5 C C4 GPP . . . D 4 95.932 49.132 125.201 0.33 50.71 ? C4 GPP 903 A 1 HETATM 6 C C5 GPP . . . D 4 94.799 51.517 125.069 0.33 50.4 ? C5 GPP 903 A 1 HETATM 7 C C6 GPP . . . D 4 93.696 51.198 126.07 0.33 50.43 ? C6 GPP 903 A 1 HETATM 8 C C7 GPP . . . D 4 92.637 52.1 125.988 0.33 51.04 ? C7 GPP 903 A 1 HETATM 9 C C8 GPP . . . D 4 91.448 51.974 125.27 0.33 50.92 ? C8 GPP 903 A 1 HETATM 10 C C9 GPP . . . D 4 91.17 50.722 124.409 0.33 51.02 ? C9 GPP 903 A 1 HETATM 11 C C10 GPP . . . D 4 90.419 53.109 125.34 0.33 49.85 ? C10 GPP 903 A 1 HETATM 12 P PA GPP . . . D 4 95.91 49.043 119.7 0.33 55.68 ? PA GPP 903 A 1 HETATM 13 O O1A GPP . . . D 4 94.58 48.146 119.57 0.33 56.16 ? O1A GPP 903 A 1 HETATM 14 O O2A GPP . . . D 4 95.477 50.56 119.224 0.33 55.66 ? O2A GPP 903 A 1 HETATM 15 O O3A GPP . . . D 4 97.113 48.442 118.802 0.33 54.51 ? O3A GPP 903 A 1 HETATM 16 P PB GPP . . . D 4 97.28 46.875 118.476 0.33 53.92 ? PB GPP 903 A 1 HETATM 17 O O1B GPP . . . D 4 96.385 46.377 117.414 0.33 53.41 ? O1B GPP 903 A 1 HETATM 18 O O2B GPP . . . D 4 98.834 46.749 118.088 0.33 53.73 ? O2B GPP 903 A 1 HETATM 19 O O3B GPP . . . D 4 97.135 46.081 119.867 0.33 53.57 ? O3B GPP 903 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #