data_3FBP # _model_server_result.job_id WdVeGls6o5shgI7HUkeMEA _model_server_result.datetime_utc '2025-04-21 05:46:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":336}' # _entry.id 3FBP # _exptl.entry_id 3FBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FBP _cell.length_a 131.6 _cell.length_b 131.6 _cell.length_c 68.9 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FDP _chem_comp.mon_nstd_flag n _chem_comp.name 2,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-2,6-DIPHOSPHATE;2,6-di-O-phosphono-beta-D-fructose;2,6-di-O-phosphono-D-fructose;2,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FDP doub 83 n n P1 O2P FDP sing 84 n n P1 O3P FDP sing 85 n n P1 O2 FDP sing 86 n n O2P HOP2 FDP sing 87 n n O3P HOP3 FDP sing 88 n n O1 C1 FDP sing 89 n n O1 HO1 FDP sing 90 n n C1 C2 FDP sing 91 n n C1 H11 FDP sing 92 n n C1 H12 FDP sing 93 n n C2 O2 FDP sing 94 n n C2 C3 FDP sing 95 n n C2 O5 FDP sing 96 n n C3 O3 FDP sing 97 n n C3 C4 FDP sing 98 n n C3 H3 FDP sing 99 n n O3 HO3 FDP sing 100 n n C4 O4 FDP sing 101 n n C4 C5 FDP sing 102 n n C4 H4 FDP sing 103 n n O4 HO4 FDP sing 104 n n C5 O5 FDP sing 105 n n C5 C6 FDP sing 106 n n C5 H5 FDP sing 107 n n C6 O6 FDP sing 108 n n C6 H61 FDP sing 109 n n C6 H62 FDP sing 110 n n O6 P2 FDP sing 111 n n P2 O4P FDP doub 112 n n P2 O5P FDP sing 113 n n P2 O6P FDP sing 114 n n O5P HOP5 FDP sing 115 n n O6P HOP6 FDP sing 116 n n # _pdbx_chem_comp_identifier.comp_id FDP _pdbx_chem_comp_identifier.identifier b-D-Fruf2PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3FBP _atom_sites.fract_transf_matrix[1][1] 0.007599 _atom_sites.fract_transf_matrix[1][2] 0.004387 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FDP A 1 336 336 FDP FDP . D 2 FDP B 1 336 336 FDP FDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FDP . . . C 2 39.131 88.963 27.449 1 22.17 ? P1 FDP 336 A 1 HETATM 2 O O1P FDP . . . C 2 39.889 90.167 27.977 1 19.6 ? O1P FDP 336 A 1 HETATM 3 O O2P FDP . . . C 2 40.151 87.96 26.958 1 20.9 ? O2P FDP 336 A 1 HETATM 4 O O3P FDP . . . C 2 38.289 88.329 28.539 1 18.46 ? O3P FDP 336 A 1 HETATM 5 O O1 FDP . . . C 2 37.596 92.905 26.748 1 20.59 ? O1 FDP 336 A 1 HETATM 6 C C1 FDP . . . C 2 38.249 91.825 26.035 1 20.5 ? C1 FDP 336 A 1 HETATM 7 C C2 FDP . . . C 2 37.394 90.543 26.042 1 20.9 ? C2 FDP 336 A 1 HETATM 8 O O2 FDP . . . C 2 38.208 89.354 26.207 1 20.06 ? O2 FDP 336 A 1 HETATM 9 C C3 FDP . . . C 2 36.618 90.487 24.705 1 20.31 ? C3 FDP 336 A 1 HETATM 10 O O3 FDP . . . C 2 36.454 89.148 24.286 1 20.08 ? O3 FDP 336 A 1 HETATM 11 C C4 FDP . . . C 2 35.321 91.244 24.997 1 21.11 ? C4 FDP 336 A 1 HETATM 12 O O4 FDP . . . C 2 35.316 92.59 24.579 1 16.69 ? O4 FDP 336 A 1 HETATM 13 C C5 FDP . . . C 2 35.101 91.063 26.516 1 22.75 ? C5 FDP 336 A 1 HETATM 14 O O5 FDP . . . C 2 36.358 90.597 27.052 1 21.2 ? O5 FDP 336 A 1 HETATM 15 C C6 FDP . . . C 2 34.01 90.115 26.929 1 24.48 ? C6 FDP 336 A 1 HETATM 16 O O6 FDP . . . C 2 34.034 90.139 28.391 1 16.36 ? O6 FDP 336 A 1 HETATM 17 P P2 FDP . . . C 2 33.234 89.133 29.355 1 22.27 ? P2 FDP 336 A 1 HETATM 18 O O4P FDP . . . C 2 34.038 88.817 30.591 1 21.95 ? O4P FDP 336 A 1 HETATM 19 O O5P FDP . . . C 2 32.907 87.824 28.671 1 20.02 ? O5P FDP 336 A 1 HETATM 20 O O6P FDP . . . C 2 31.974 89.773 29.874 1 17.78 ? O6P FDP 336 A 1 HETATM 21 H HO3 FDP . . . C 2 37.078 88.641 24.851 1 0 ? HO3 FDP 336 A 1 HETATM 22 H HO4 FDP . . . C 2 36.021 92.99 25.136 1 0 ? HO4 FDP 336 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #