data_3FC2
#
_model_server_result.job_id            hvfJv04pem3BbSorB3sLpA 
_model_server_result.datetime_utc      '2024-11-24 13:36:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fc2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":10}' 
#
_entry.id    3FC2 
#
_exptl.entry_id    3FC2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.813 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3FC2 
_cell.length_a            66.616 
_cell.length_b            66.616 
_cell.length_c            153.969 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FC2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 51.323 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I O ACT . A ACT 7 1_555 J ZN ZN . A ZN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc2 J ZN ZN . A ZN 8 1_555 A NE2 HIS 83 A HIS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc3 J ZN ZN . A ZN 8 1_555 A SG CYS 202 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
#
_chem_comp.formula           'C34 H50 N8 O3' 
_chem_comp.formula_weight    618.813 
_chem_comp.id                IBI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Volasertib 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IBI sing 180 n n 
C1 N3 IBI sing 181 n n 
C2 N4 IBI sing 182 n n 
C5 C6 IBI sing 183 n n 
C5 N3 IBI sing 184 n n 
C6 N4 IBI sing 185 n n 
C7 C8 IBI sing 186 n n 
C7 C9 IBI sing 187 n n 
C8 C10 IBI sing 188 n n 
C11 C12 IBI sing 189 n n 
C11 C9 IBI sing 190 n n 
C12 C10 IBI sing 191 n n 
C15 C17 IBI doub 192 n y 
C15 C13 IBI sing 193 n y 
C16 C18 IBI doub 194 n y 
C16 O37 IBI sing 195 n n 
C16 C14 IBI sing 196 n y 
C17 C18 IBI sing 197 n y 
C17 C39 IBI sing 198 n n 
C21 C31 IBI sing 199 n n 
C21 N23 IBI sing 200 n n 
C21 C20 IBI sing 201 n n 
N22 C24 IBI sing 202 n n 
N22 C36 IBI sing 203 n n 
N22 C20 IBI sing 204 n n 
C24 C25 IBI doub 205 n y 
C24 C29 IBI sing 206 n y 
C31 C32 IBI sing 207 n n 
C33 C34 IBI sing 208 n n 
C33 C35 IBI sing 209 n n 
C33 N23 IBI sing 210 n n 
C38 O37 IBI sing 211 n n 
C39 O40 IBI doub 212 n n 
C39 N41 IBI sing 213 n n 
C14 N19 IBI sing 214 n n 
C14 C13 IBI doub 215 n y 
N19 C26 IBI sing 216 n n 
C26 N27 IBI doub 217 n y 
C26 N28 IBI sing 218 n y 
N27 C25 IBI sing 219 n y 
C25 N23 IBI sing 220 n n 
N28 C29 IBI doub 221 n y 
C20 O30 IBI doub 222 n n 
N41 C9 IBI sing 223 n n 
C10 N3 IBI sing 224 n n 
N4 C42 IBI sing 225 n n 
C42 C43 IBI sing 226 n n 
C43 C45 IBI sing 227 n n 
C43 C44 IBI sing 228 n n 
C45 C44 IBI sing 229 n n 
C1 H1 IBI sing 230 n n 
C1 H1A IBI sing 231 n n 
C2 H2 IBI sing 232 n n 
C2 H2A IBI sing 233 n n 
C5 H5 IBI sing 234 n n 
C5 H5A IBI sing 235 n n 
C6 H6 IBI sing 236 n n 
C6 H6A IBI sing 237 n n 
C7 H7 IBI sing 238 n n 
C7 H7A IBI sing 239 n n 
C8 H8 IBI sing 240 n n 
C8 H8A IBI sing 241 n n 
C11 H11 IBI sing 242 n n 
C11 H11A IBI sing 243 n n 
C12 H12 IBI sing 244 n n 
C12 H12A IBI sing 245 n n 
C15 H15 IBI sing 246 n n 
C18 H18 IBI sing 247 n n 
C21 H21 IBI sing 248 n n 
C31 H31 IBI sing 249 n n 
C31 H31A IBI sing 250 n n 
C32 H32 IBI sing 251 n n 
C32 H32A IBI sing 252 n n 
C32 H32B IBI sing 253 n n 
C33 H33 IBI sing 254 n n 
C34 H34 IBI sing 255 n n 
C34 H34A IBI sing 256 n n 
C34 H34B IBI sing 257 n n 
C35 H35 IBI sing 258 n n 
C35 H35A IBI sing 259 n n 
C35 H35B IBI sing 260 n n 
C36 H36 IBI sing 261 n n 
C36 H36A IBI sing 262 n n 
C36 H36B IBI sing 263 n n 
C38 H38 IBI sing 264 n n 
C38 H38A IBI sing 265 n n 
C38 H38B IBI sing 266 n n 
N19 HN19 IBI sing 267 n n 
C29 H29 IBI sing 268 n n 
C13 H13 IBI sing 269 n n 
N41 HN41 IBI sing 270 n n 
C9 H9 IBI sing 271 n n 
C10 H10 IBI sing 272 n n 
C42 H42 IBI sing 273 n n 
C42 H42A IBI sing 274 n n 
C43 H43 IBI sing 275 n n 
C45 H45 IBI sing 276 n n 
C45 H45A IBI sing 277 n n 
C44 H44 IBI sing 278 n n 
C44 H44A IBI sing 279 n n 
#
_atom_sites.entry_id                     3FC2 
_atom_sites.fract_transf_matrix[1][1]    0.015011 
_atom_sites.fract_transf_matrix[1][2]    0.008667 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017334 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006495 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IBI A 1 10 1 IBI INX . 
C 3 EDO A 1 1 1 EDO EDO . 
D 3 EDO A 1 2 2 EDO EDO . 
E 4 ACT A 1 3 4 ACT ACT . 
F 3 EDO A 1 4 4 EDO EDO . 
G 5 PEG A 1 5 5 PEG PEG . 
H 3 EDO A 1 6 6 EDO EDO . 
I 4 ACT A 1 7 7 ACT ACT . 
J 6 ZN A 1 8 8 ZN ZN . 
K 7 GOL A 1 9 9 GOL GOL . 
L 8 HOH A 1 346 1 HOH HOH . 
L 8 HOH A 2 347 2 HOH HOH . 
L 8 HOH A 3 348 3 HOH HOH . 
L 8 HOH A 4 349 4 HOH HOH . 
L 8 HOH A 5 350 5 HOH HOH . 
L 8 HOH A 6 351 6 HOH HOH . 
L 8 HOH A 7 352 7 HOH HOH . 
L 8 HOH A 8 353 8 HOH HOH . 
L 8 HOH A 9 354 9 HOH HOH . 
L 8 HOH A 10 355 10 HOH HOH . 
L 8 HOH A 11 356 11 HOH HOH . 
L 8 HOH A 12 357 12 HOH HOH . 
L 8 HOH A 13 358 13 HOH HOH . 
L 8 HOH A 14 359 14 HOH HOH . 
L 8 HOH A 15 360 15 HOH HOH . 
L 8 HOH A 16 361 16 HOH HOH . 
L 8 HOH A 17 362 17 HOH HOH . 
L 8 HOH A 18 363 18 HOH HOH . 
L 8 HOH A 19 364 19 HOH HOH . 
L 8 HOH A 20 365 20 HOH HOH . 
L 8 HOH A 21 366 21 HOH HOH . 
L 8 HOH A 22 367 22 HOH HOH . 
L 8 HOH A 23 368 23 HOH HOH . 
L 8 HOH A 24 369 24 HOH HOH . 
L 8 HOH A 25 370 25 HOH HOH . 
L 8 HOH A 26 371 26 HOH HOH . 
L 8 HOH A 27 372 27 HOH HOH . 
L 8 HOH A 28 373 28 HOH HOH . 
L 8 HOH A 29 374 29 HOH HOH . 
L 8 HOH A 30 375 30 HOH HOH . 
L 8 HOH A 31 376 31 HOH HOH . 
L 8 HOH A 32 377 32 HOH HOH . 
L 8 HOH A 33 378 33 HOH HOH . 
L 8 HOH A 34 379 34 HOH HOH . 
L 8 HOH A 35 380 35 HOH HOH . 
L 8 HOH A 36 381 36 HOH HOH . 
L 8 HOH A 37 382 37 HOH HOH . 
L 8 HOH A 38 383 38 HOH HOH . 
L 8 HOH A 39 384 39 HOH HOH . 
L 8 HOH A 40 385 40 HOH HOH . 
L 8 HOH A 41 386 41 HOH HOH . 
L 8 HOH A 42 387 42 HOH HOH . 
L 8 HOH A 43 388 43 HOH HOH . 
L 8 HOH A 44 389 44 HOH HOH . 
L 8 HOH A 45 390 45 HOH HOH . 
L 8 HOH A 46 391 46 HOH HOH . 
L 8 HOH A 47 392 47 HOH HOH . 
L 8 HOH A 48 393 48 HOH HOH . 
L 8 HOH A 49 394 49 HOH HOH . 
L 8 HOH A 50 395 50 HOH HOH . 
L 8 HOH A 51 396 51 HOH HOH . 
L 8 HOH A 52 397 52 HOH HOH . 
L 8 HOH A 53 398 53 HOH HOH . 
L 8 HOH A 54 399 54 HOH HOH . 
L 8 HOH A 55 400 55 HOH HOH . 
L 8 HOH A 56 401 56 HOH HOH . 
L 8 HOH A 57 402 57 HOH HOH . 
L 8 HOH A 58 403 58 HOH HOH . 
L 8 HOH A 59 404 59 HOH HOH . 
L 8 HOH A 60 405 60 HOH HOH . 
L 8 HOH A 61 406 61 HOH HOH . 
L 8 HOH A 62 407 62 HOH HOH . 
L 8 HOH A 63 408 63 HOH HOH . 
L 8 HOH A 64 409 64 HOH HOH . 
L 8 HOH A 65 410 65 HOH HOH . 
L 8 HOH A 66 411 66 HOH HOH . 
L 8 HOH A 67 412 67 HOH HOH . 
L 8 HOH A 68 413 68 HOH HOH . 
L 8 HOH A 69 414 69 HOH HOH . 
L 8 HOH A 70 415 70 HOH HOH . 
L 8 HOH A 71 416 71 HOH HOH . 
L 8 HOH A 72 417 72 HOH HOH . 
L 8 HOH A 73 418 73 HOH HOH . 
L 8 HOH A 74 419 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IBI . . . B 2 51.334 -0.914 9.563 1 71.96 ? C1 IBI 10 A 1 
HETATM 2 C C2 IBI . . . B 2 52.24 0.295 9.236 1 72.8 ? C2 IBI 10 A 1 
HETATM 3 C C5 IBI . . . B 2 53.176 -2.035 10.617 1 74.92 ? C5 IBI 10 A 1 
HETATM 4 C C6 IBI . . . B 2 54.106 -0.836 10.31 1 74.58 ? C6 IBI 10 A 1 
HETATM 5 C C7 IBI . . . B 2 49.304 -4.803 8.651 1 58.49 ? C7 IBI 10 A 1 
HETATM 6 C C8 IBI . . . B 2 50.026 -3.445 8.83 1 63.04 ? C8 IBI 10 A 1 
HETATM 7 C C11 IBI . . . B 2 51.323 -6.023 9.235 1 55.46 ? C11 IBI 10 A 1 
HETATM 8 C C12 IBI . . . B 2 52.133 -4.706 9.4 1 56.39 ? C12 IBI 10 A 1 
HETATM 9 C C15 IBI . . . B 2 47.231 -9.355 7.919 1 34.98 ? C15 IBI 10 A 1 
HETATM 10 C C16 IBI . . . B 2 47.687 -11.432 6.153 1 36.67 ? C16 IBI 10 A 1 
HETATM 11 C C17 IBI . . . B 2 48.274 -9.229 6.984 1 34.91 ? C17 IBI 10 A 1 
HETATM 12 C C18 IBI . . . B 2 48.48 -10.281 6.099 1 33.7 ? C18 IBI 10 A 1 
HETATM 13 C C21 IBI . . . B 2 42.442 -12.97 12.185 1 30.81 ? C21 IBI 10 A 1 
HETATM 14 N N22 IBI . . . B 2 42.124 -14.897 10.601 1 36.15 ? N22 IBI 10 A 1 
HETATM 15 C C24 IBI . . . B 2 43.122 -14.345 9.73 1 32.25 ? C24 IBI 10 A 1 
HETATM 16 C C31 IBI . . . B 2 43.306 -13.493 13.375 1 36.34 ? C31 IBI 10 A 1 
HETATM 17 C C32 IBI . . . B 2 44.582 -14.273 12.959 1 27.03 ? C32 IBI 10 A 1 
HETATM 18 C C33 IBI . . . B 2 43.963 -11.127 11.792 1 32.27 ? C33 IBI 10 A 1 
HETATM 19 C C34 IBI . . . B 2 45.372 -10.825 11.299 1 31.52 ? C34 IBI 10 A 1 
HETATM 20 C C35 IBI . . . B 2 43.043 -9.893 11.682 1 25.64 ? C35 IBI 10 A 1 
HETATM 21 C C36 IBI . . . B 2 41.442 -16.175 10.294 1 33.61 ? C36 IBI 10 A 1 
HETATM 22 C C38 IBI . . . B 2 49.096 -12.817 4.68 1 45.51 ? C38 IBI 10 A 1 
HETATM 23 C C39 IBI . . . B 2 49.159 -7.989 6.935 1 36.25 ? C39 IBI 10 A 1 
HETATM 24 O O40 IBI . . . B 2 49.665 -7.703 5.887 1 41.56 ? O40 IBI 10 A 1 
HETATM 25 O O37 IBI . . . B 2 47.862 -12.498 5.305 1 39.66 ? O37 IBI 10 A 1 
HETATM 26 C C14 IBI . . . B 2 46.652 -11.544 7.078 1 34.94 ? C14 IBI 10 A 1 
HETATM 27 N N19 IBI . . . B 2 45.958 -12.792 7.055 1 34.25 ? N19 IBI 10 A 1 
HETATM 28 C C26 IBI . . . B 2 45.019 -13.331 7.974 1 32.8 ? C26 IBI 10 A 1 
HETATM 29 N N27 IBI . . . B 2 44.688 -12.651 9.133 1 31.36 ? N27 IBI 10 A 1 
HETATM 30 C C25 IBI . . . B 2 43.744 -13.126 10.022 1 31.27 ? C25 IBI 10 A 1 
HETATM 31 N N23 IBI . . . B 2 43.395 -12.396 11.213 1 33.05 ? N23 IBI 10 A 1 
HETATM 32 N N28 IBI . . . B 2 44.408 -14.528 7.692 1 27.51 ? N28 IBI 10 A 1 
HETATM 33 C C29 IBI . . . B 2 43.468 -15.022 8.57 1 29.27 ? C29 IBI 10 A 1 
HETATM 34 C C20 IBI . . . B 2 41.755 -14.236 11.77 1 31.81 ? C20 IBI 10 A 1 
HETATM 35 O O30 IBI . . . B 2 40.928 -14.691 12.539 1 33 ? O30 IBI 10 A 1 
HETATM 36 C C13 IBI . . . B 2 46.427 -10.498 7.966 1 32.68 ? C13 IBI 10 A 1 
HETATM 37 N N41 IBI . . . B 2 49.411 -7.188 8.06 1 44.56 ? N41 IBI 10 A 1 
HETATM 38 C C9 IBI . . . B 2 50.219 -5.932 8.179 1 51.99 ? C9 IBI 10 A 1 
HETATM 39 C C10 IBI . . . B 2 51.285 -3.452 9.748 1 63.27 ? C10 IBI 10 A 1 
HETATM 40 N N3 IBI . . . B 2 52.103 -2.195 9.591 1 70.28 ? N3 IBI 10 A 1 
HETATM 41 N N4 IBI . . . B 2 53.361 0.436 10.191 1 75.44 ? N4 IBI 10 A 1 
HETATM 42 C C42 IBI . . . B 2 54.247 1.572 9.88 0 79.4 ? C42 IBI 10 A 1 
HETATM 43 C C43 IBI . . . B 2 53.804 2.914 10.499 0 79.35 ? C43 IBI 10 A 1 
HETATM 44 C C45 IBI . . . B 2 54.086 4.297 9.952 0 79.25 ? C45 IBI 10 A 1 
HETATM 45 C C44 IBI . . . B 2 52.732 3.713 9.713 0 79.24 ? C44 IBI 10 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           45 
#