data_3FC6 # _model_server_result.job_id XT5a2QAC1h6-j7-ffrlPoA _model_server_result.datetime_utc '2024-11-08 22:34:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fc6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 3FC6 # _exptl.entry_id 3FC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RETINOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.92 _cell.angle_gamma 90 _cell.entry_id 3FC6 _cell.length_a 122.162 _cell.length_b 90.029 _cell.length_c 101.642 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id REA _chem_comp.mon_nstd_flag . _chem_comp.name 'RETINOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 REA sing 357 n n C1 C6 REA sing 358 n n C1 C16 REA sing 359 n n C1 C17 REA sing 360 n n C2 C3 REA sing 361 n n C2 H21 REA sing 362 n n C2 H22 REA sing 363 n n C3 C4 REA sing 364 n n C3 H31 REA sing 365 n n C3 H32 REA sing 366 n n C4 C5 REA sing 367 n n C4 H41 REA sing 368 n n C4 H42 REA sing 369 n n C5 C6 REA doub 370 n n C5 C18 REA sing 371 n n C6 C7 REA sing 372 n n C7 C8 REA doub 373 e n C7 H7 REA sing 374 n n C8 C9 REA sing 375 n n C8 H8 REA sing 376 n n C9 C10 REA doub 377 e n C9 C19 REA sing 378 n n C10 C11 REA sing 379 n n C10 H10 REA sing 380 n n C11 C12 REA doub 381 e n C11 H11 REA sing 382 n n C12 C13 REA sing 383 n n C12 H12 REA sing 384 n n C13 C14 REA doub 385 e n C13 C20 REA sing 386 n n C14 C15 REA sing 387 n n C14 H14 REA sing 388 n n C15 O1 REA doub 389 n n C15 O2 REA sing 390 n n C16 H161 REA sing 391 n n C16 H162 REA sing 392 n n C16 H163 REA sing 393 n n C17 H171 REA sing 394 n n C17 H172 REA sing 395 n n C17 H173 REA sing 396 n n C18 H181 REA sing 397 n n C18 H182 REA sing 398 n n C18 H183 REA sing 399 n n C19 H191 REA sing 400 n n C19 H192 REA sing 401 n n C19 H193 REA sing 402 n n C20 H201 REA sing 403 n n C20 H202 REA sing 404 n n C20 H203 REA sing 405 n n O2 HO2 REA sing 406 n n # _atom_sites.entry_id 3FC6 _atom_sites.fract_transf_matrix[1][1] 0.008186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003295 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 REA A 1 501 501 REA REA . F 4 LX2 B 1 1 1 LX2 LX2 . G 3 REA C 1 501 501 REA REA . H 4 LX2 D 1 1 1 LX2 LX2 . I 5 HOH A 1 10 10 HOH HOH . I 5 HOH A 2 32 32 HOH HOH . I 5 HOH A 3 34 34 HOH HOH . I 5 HOH A 4 35 35 HOH HOH . I 5 HOH A 5 42 42 HOH HOH . I 5 HOH A 6 43 43 HOH HOH . I 5 HOH A 7 54 54 HOH HOH . I 5 HOH A 8 72 72 HOH HOH . I 5 HOH A 9 73 73 HOH HOH . I 5 HOH A 10 77 77 HOH HOH . I 5 HOH A 11 79 79 HOH HOH . I 5 HOH A 12 80 80 HOH HOH . I 5 HOH A 13 99 99 HOH HOH . I 5 HOH A 14 119 119 HOH HOH . I 5 HOH A 15 121 121 HOH HOH . I 5 HOH A 16 124 124 HOH HOH . I 5 HOH A 17 133 133 HOH HOH . I 5 HOH A 18 141 141 HOH HOH . I 5 HOH A 19 144 144 HOH HOH . I 5 HOH A 20 159 159 HOH HOH . I 5 HOH A 21 169 169 HOH HOH . I 5 HOH A 22 185 185 HOH HOH . I 5 HOH A 23 189 189 HOH HOH . I 5 HOH A 24 196 196 HOH HOH . I 5 HOH A 25 197 197 HOH HOH . I 5 HOH A 26 200 200 HOH HOH . I 5 HOH A 27 204 204 HOH HOH . I 5 HOH A 28 205 205 HOH HOH . I 5 HOH A 29 214 214 HOH HOH . I 5 HOH A 30 216 216 HOH HOH . I 5 HOH A 31 217 217 HOH HOH . I 5 HOH A 32 463 225 HOH HOH . J 5 HOH B 1 3 3 HOH HOH . J 5 HOH B 2 8 8 HOH HOH . J 5 HOH B 3 12 12 HOH HOH . J 5 HOH B 4 14 14 HOH HOH . J 5 HOH B 5 17 17 HOH HOH . J 5 HOH B 6 20 20 HOH HOH . J 5 HOH B 7 30 30 HOH HOH . J 5 HOH B 8 33 33 HOH HOH . J 5 HOH B 9 37 37 HOH HOH . J 5 HOH B 10 38 38 HOH HOH . J 5 HOH B 11 44 44 HOH HOH . J 5 HOH B 12 46 46 HOH HOH . J 5 HOH B 13 49 49 HOH HOH . J 5 HOH B 14 56 56 HOH HOH . J 5 HOH B 15 60 60 HOH HOH . J 5 HOH B 16 63 63 HOH HOH . J 5 HOH B 17 70 70 HOH HOH . J 5 HOH B 18 74 74 HOH HOH . J 5 HOH B 19 76 76 HOH HOH . J 5 HOH B 20 85 85 HOH HOH . J 5 HOH B 21 86 86 HOH HOH . J 5 HOH B 22 87 87 HOH HOH . J 5 HOH B 23 91 91 HOH HOH . J 5 HOH B 24 92 92 HOH HOH . J 5 HOH B 25 96 96 HOH HOH . J 5 HOH B 26 103 103 HOH HOH . J 5 HOH B 27 108 108 HOH HOH . J 5 HOH B 28 111 111 HOH HOH . J 5 HOH B 29 112 112 HOH HOH . J 5 HOH B 30 115 115 HOH HOH . J 5 HOH B 31 118 118 HOH HOH . J 5 HOH B 32 127 127 HOH HOH . J 5 HOH B 33 131 131 HOH HOH . J 5 HOH B 34 135 135 HOH HOH . J 5 HOH B 35 150 150 HOH HOH . J 5 HOH B 36 161 161 HOH HOH . J 5 HOH B 37 162 162 HOH HOH . J 5 HOH B 38 163 163 HOH HOH . J 5 HOH B 39 165 165 HOH HOH . J 5 HOH B 40 170 170 HOH HOH . J 5 HOH B 41 171 171 HOH HOH . J 5 HOH B 42 175 175 HOH HOH . J 5 HOH B 43 176 176 HOH HOH . J 5 HOH B 44 177 177 HOH HOH . J 5 HOH B 45 446 183 HOH HOH . J 5 HOH B 46 447 188 HOH HOH . J 5 HOH B 47 448 190 HOH HOH . J 5 HOH B 48 449 192 HOH HOH . J 5 HOH B 49 450 194 HOH HOH . J 5 HOH B 50 451 199 HOH HOH . J 5 HOH B 51 452 203 HOH HOH . J 5 HOH B 52 453 206 HOH HOH . J 5 HOH B 53 454 207 HOH HOH . J 5 HOH B 54 455 210 HOH HOH . J 5 HOH B 55 456 211 HOH HOH . J 5 HOH B 56 457 219 HOH HOH . J 5 HOH B 57 458 221 HOH HOH . J 5 HOH B 58 459 226 HOH HOH . J 5 HOH B 59 460 227 HOH HOH . J 5 HOH B 60 461 230 HOH HOH . J 5 HOH B 61 462 231 HOH HOH . J 5 HOH B 62 463 234 HOH HOH . J 5 HOH B 63 464 236 HOH HOH . J 5 HOH B 64 465 238 HOH HOH . K 5 HOH C 1 2 2 HOH HOH . K 5 HOH C 2 4 4 HOH HOH . K 5 HOH C 3 6 6 HOH HOH . K 5 HOH C 4 9 9 HOH HOH . K 5 HOH C 5 16 16 HOH HOH . K 5 HOH C 6 18 18 HOH HOH . K 5 HOH C 7 19 19 HOH HOH . K 5 HOH C 8 23 23 HOH HOH . K 5 HOH C 9 24 24 HOH HOH . K 5 HOH C 10 25 25 HOH HOH . K 5 HOH C 11 28 28 HOH HOH . K 5 HOH C 12 29 29 HOH HOH . K 5 HOH C 13 36 36 HOH HOH . K 5 HOH C 14 41 41 HOH HOH . K 5 HOH C 15 45 45 HOH HOH . K 5 HOH C 16 48 48 HOH HOH . K 5 HOH C 17 51 51 HOH HOH . K 5 HOH C 18 64 64 HOH HOH . K 5 HOH C 19 75 75 HOH HOH . K 5 HOH C 20 78 78 HOH HOH . K 5 HOH C 21 83 83 HOH HOH . K 5 HOH C 22 84 84 HOH HOH . K 5 HOH C 23 94 94 HOH HOH . K 5 HOH C 24 97 97 HOH HOH . K 5 HOH C 25 105 105 HOH HOH . K 5 HOH C 26 106 106 HOH HOH . K 5 HOH C 27 107 107 HOH HOH . K 5 HOH C 28 114 114 HOH HOH . K 5 HOH C 29 116 116 HOH HOH . K 5 HOH C 30 122 122 HOH HOH . K 5 HOH C 31 130 130 HOH HOH . K 5 HOH C 32 140 140 HOH HOH . K 5 HOH C 33 148 148 HOH HOH . K 5 HOH C 34 151 151 HOH HOH . K 5 HOH C 35 155 155 HOH HOH . K 5 HOH C 36 156 156 HOH HOH . K 5 HOH C 37 157 157 HOH HOH . K 5 HOH C 38 160 160 HOH HOH . K 5 HOH C 39 164 164 HOH HOH . K 5 HOH C 40 166 166 HOH HOH . K 5 HOH C 41 174 174 HOH HOH . K 5 HOH C 42 178 178 HOH HOH . K 5 HOH C 43 181 181 HOH HOH . K 5 HOH C 44 182 182 HOH HOH . K 5 HOH C 45 198 198 HOH HOH . K 5 HOH C 46 202 202 HOH HOH . K 5 HOH C 47 209 209 HOH HOH . K 5 HOH C 48 213 213 HOH HOH . K 5 HOH C 49 215 215 HOH HOH . K 5 HOH C 50 220 220 HOH HOH . K 5 HOH C 51 463 222 HOH HOH . K 5 HOH C 52 464 223 HOH HOH . K 5 HOH C 53 465 237 HOH HOH . L 5 HOH D 1 5 5 HOH HOH . L 5 HOH D 2 7 7 HOH HOH . L 5 HOH D 3 11 11 HOH HOH . L 5 HOH D 4 15 15 HOH HOH . L 5 HOH D 5 21 21 HOH HOH . L 5 HOH D 6 22 22 HOH HOH . L 5 HOH D 7 26 26 HOH HOH . L 5 HOH D 8 27 27 HOH HOH . L 5 HOH D 9 39 39 HOH HOH . L 5 HOH D 10 40 40 HOH HOH . L 5 HOH D 11 47 47 HOH HOH . L 5 HOH D 12 50 50 HOH HOH . L 5 HOH D 13 53 53 HOH HOH . L 5 HOH D 14 55 55 HOH HOH . L 5 HOH D 15 58 58 HOH HOH . L 5 HOH D 16 59 59 HOH HOH . L 5 HOH D 17 61 61 HOH HOH . L 5 HOH D 18 62 62 HOH HOH . L 5 HOH D 19 65 65 HOH HOH . L 5 HOH D 20 66 66 HOH HOH . L 5 HOH D 21 67 67 HOH HOH . L 5 HOH D 22 68 68 HOH HOH . L 5 HOH D 23 69 69 HOH HOH . L 5 HOH D 24 71 71 HOH HOH . L 5 HOH D 25 81 81 HOH HOH . L 5 HOH D 26 88 88 HOH HOH . L 5 HOH D 27 89 89 HOH HOH . L 5 HOH D 28 90 90 HOH HOH . L 5 HOH D 29 93 93 HOH HOH . L 5 HOH D 30 95 95 HOH HOH . L 5 HOH D 31 98 98 HOH HOH . L 5 HOH D 32 100 100 HOH HOH . L 5 HOH D 33 101 101 HOH HOH . L 5 HOH D 34 102 102 HOH HOH . L 5 HOH D 35 104 104 HOH HOH . L 5 HOH D 36 109 109 HOH HOH . L 5 HOH D 37 110 110 HOH HOH . L 5 HOH D 38 113 113 HOH HOH . L 5 HOH D 39 117 117 HOH HOH . L 5 HOH D 40 120 120 HOH HOH . L 5 HOH D 41 123 123 HOH HOH . L 5 HOH D 42 125 125 HOH HOH . L 5 HOH D 43 126 126 HOH HOH . L 5 HOH D 44 128 128 HOH HOH . L 5 HOH D 45 129 129 HOH HOH . L 5 HOH D 46 132 132 HOH HOH . L 5 HOH D 47 134 134 HOH HOH . L 5 HOH D 48 137 137 HOH HOH . L 5 HOH D 49 138 138 HOH HOH . L 5 HOH D 50 142 142 HOH HOH . L 5 HOH D 51 143 143 HOH HOH . L 5 HOH D 52 145 145 HOH HOH . L 5 HOH D 53 146 146 HOH HOH . L 5 HOH D 54 149 149 HOH HOH . L 5 HOH D 55 152 152 HOH HOH . L 5 HOH D 56 153 153 HOH HOH . L 5 HOH D 57 154 154 HOH HOH . L 5 HOH D 58 158 158 HOH HOH . L 5 HOH D 59 167 167 HOH HOH . L 5 HOH D 60 168 168 HOH HOH . L 5 HOH D 61 172 172 HOH HOH . L 5 HOH D 62 173 173 HOH HOH . L 5 HOH D 63 179 179 HOH HOH . L 5 HOH D 64 446 1 HOH HOH . L 5 HOH D 65 447 180 HOH HOH . L 5 HOH D 66 448 184 HOH HOH . L 5 HOH D 67 449 186 HOH HOH . L 5 HOH D 68 450 187 HOH HOH . L 5 HOH D 69 451 191 HOH HOH . L 5 HOH D 70 452 193 HOH HOH . L 5 HOH D 71 453 195 HOH HOH . L 5 HOH D 72 454 201 HOH HOH . L 5 HOH D 73 455 208 HOH HOH . L 5 HOH D 74 456 212 HOH HOH . L 5 HOH D 75 457 218 HOH HOH . L 5 HOH D 76 458 224 HOH HOH . L 5 HOH D 77 459 228 HOH HOH . L 5 HOH D 78 460 229 HOH HOH . L 5 HOH D 79 461 232 HOH HOH . L 5 HOH D 80 462 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 REA . . . E 3 84.097 60.36 31.27 1 42.76 ? C1 REA 501 A 1 HETATM 2 C C2 REA . . . E 3 83.915 61.864 31.056 1 39.65 ? C2 REA 501 A 1 HETATM 3 C C3 REA . . . E 3 83.238 62.615 32.197 1 38.78 ? C3 REA 501 A 1 HETATM 4 C C4 REA . . . E 3 82.21 61.771 32.925 1 36.76 ? C4 REA 501 A 1 HETATM 5 C C5 REA . . . E 3 82.97 60.625 33.53 1 39.44 ? C5 REA 501 A 1 HETATM 6 C C6 REA . . . E 3 83.905 59.955 32.728 1 36.8 ? C6 REA 501 A 1 HETATM 7 C C7 REA . . . E 3 84.775 58.868 33.203 1 35.95 ? C7 REA 501 A 1 HETATM 8 C C8 REA . . . E 3 84.551 58.106 34.43 1 37.81 ? C8 REA 501 A 1 HETATM 9 C C9 REA . . . E 3 85.481 57.028 34.773 1 36.96 ? C9 REA 501 A 1 HETATM 10 C C10 REA . . . E 3 86.071 56.979 36.118 1 34.64 ? C10 REA 501 A 1 HETATM 11 C C11 REA . . . E 3 86.993 58.029 36.573 1 31.11 ? C11 REA 501 A 1 HETATM 12 C C12 REA . . . E 3 87.807 57.777 37.769 1 39.22 ? C12 REA 501 A 1 HETATM 13 C C13 REA . . . E 3 88.151 58.839 38.73 1 33.97 ? C13 REA 501 A 1 HETATM 14 C C14 REA . . . E 3 88.582 58.447 40.017 1 37.46 ? C14 REA 501 A 1 HETATM 15 C C15 REA . . . E 3 88.991 59.388 41.073 1 41.35 ? C15 REA 501 A 1 HETATM 16 C C16 REA . . . E 3 85.528 59.992 30.894 1 39.4 ? C16 REA 501 A 1 HETATM 17 C C17 REA . . . E 3 83.146 59.57 30.377 1 37.43 ? C17 REA 501 A 1 HETATM 18 C C18 REA . . . E 3 82.701 60.292 34.969 1 32.71 ? C18 REA 501 A 1 HETATM 19 C C19 REA . . . E 3 85.77 55.961 33.761 1 47.52 ? C19 REA 501 A 1 HETATM 20 C C20 REA . . . E 3 88.017 60.28 38.337 1 35.62 ? C20 REA 501 A 1 HETATM 21 O O1 REA . . . E 3 89.001 59.01 42.264 1 39.36 ? O1 REA 501 A 1 HETATM 22 O O2 REA . . . E 3 89.349 60.554 40.808 1 38.47 ? O2 REA 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #