data_3FC9 # _model_server_result.job_id vXQgj4T1sSoKrD76vaKOcQ _model_server_result.datetime_utc '2024-11-24 08:51:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":142}' # _entry.id 3FC9 # _exptl.entry_id 3FC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FC9 _cell.length_a 82.586 _cell.length_b 153.043 _cell.length_c 184.786 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 ? hexameric 6 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,P,Q,R,S,W 1 1,2 C,D,E,J,K,L,M,N,O,T,U,V 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 82.586 0 277.179 3 'crystal symmetry operation' 4_567 x,-y+1,-z+2 1 0 0 0 -1 0 0 0 -1 0 153.043 369.572 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H MG MG . B MG 142 1_555 I O1A CDP . B CDP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 H MG MG . B MG 142 1_555 I O2B CDP . B CDP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc3 J MG MG . C MG 142 1_555 K O1A CDP . C CDP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 J MG MG . C MG 142 1_555 K O2B CDP . C CDP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc5 L MG MG . D MG 142 1_555 M O2B CDP . D CDP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc6 L MG MG . D MG 142 1_555 M O1A CDP . D CDP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc7 N MG MG . E MG 142 1_555 O O1A CDP . E CDP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc8 P MG MG . F MG 142 1_555 Q O2B CDP . F CDP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 111 n n N1 C6 CTP sing 112 n n N1 C1' CTP sing 113 n n C2 N3 CTP sing 114 n n C2 O2 CTP doub 115 n n N3 C4 CTP doub 116 n n C4 C5 CTP sing 117 n n C4 N4 CTP sing 118 n n C5 C6 CTP doub 119 n n C5 H5 CTP sing 120 n n C6 H6 CTP sing 121 n n N4 HN41 CTP sing 122 n n N4 HN42 CTP sing 123 n n C1' C2' CTP sing 124 n n C1' O4' CTP sing 125 n n C1' H1' CTP sing 126 n n C2' O2' CTP sing 127 n n C2' C3' CTP sing 128 n n C2' H2' CTP sing 129 n n O2' HO2' CTP sing 130 n n C3' C4' CTP sing 131 n n C3' O3' CTP sing 132 n n C3' H3' CTP sing 133 n n C4' O4' CTP sing 134 n n C4' C5' CTP sing 135 n n C4' H4' CTP sing 136 n n O3' HO3' CTP sing 137 n n C5' O5' CTP sing 138 n n C5' "H5'1" CTP sing 139 n n C5' "H5'2" CTP sing 140 n n O5' PA CTP sing 141 n n PA O1A CTP doub 142 n n PA O2A CTP sing 143 n n PA O3A CTP sing 144 n n O2A HOA2 CTP sing 145 n n O3A PB CTP sing 146 n n PB O1B CTP doub 147 n n PB O2B CTP sing 148 n n PB O3B CTP sing 149 n n O2B HOB2 CTP sing 150 n n O3B PG CTP sing 151 n n PG O1G CTP doub 152 n n PG O2G CTP sing 153 n n PG O3G CTP sing 154 n n O2G HOG2 CTP sing 155 n n O3G HOG3 CTP sing 156 n n # _atom_sites.entry_id 3FC9 _atom_sites.fract_transf_matrix[1][1] 0.012109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CTP A 1 142 1 CTP CTP . H 3 MG B 1 142 1 MG MG . I 4 CDP B 1 143 1 CDP CDP . J 3 MG C 1 142 1 MG MG . K 4 CDP C 1 143 1 CDP CDP . L 3 MG D 1 142 1 MG MG . M 4 CDP D 1 143 1 CDP CDP . N 3 MG E 1 142 1 MG MG . O 4 CDP E 1 143 1 CDP CDP . P 3 MG F 1 142 1 MG MG . Q 4 CDP F 1 143 1 CDP CDP . R 5 HOH A 1 143 17 HOH HOH . R 5 HOH A 2 144 19 HOH HOH . R 5 HOH A 3 145 55 HOH HOH . S 5 HOH B 1 144 3 HOH HOH . S 5 HOH B 2 145 4 HOH HOH . S 5 HOH B 3 146 24 HOH HOH . S 5 HOH B 4 147 26 HOH HOH . S 5 HOH B 5 148 28 HOH HOH . S 5 HOH B 6 149 32 HOH HOH . S 5 HOH B 7 150 33 HOH HOH . S 5 HOH B 8 151 34 HOH HOH . S 5 HOH B 9 152 36 HOH HOH . S 5 HOH B 10 153 38 HOH HOH . S 5 HOH B 11 154 42 HOH HOH . S 5 HOH B 12 155 48 HOH HOH . S 5 HOH B 13 156 50 HOH HOH . S 5 HOH B 14 157 54 HOH HOH . T 5 HOH C 1 144 8 HOH HOH . T 5 HOH C 2 145 11 HOH HOH . T 5 HOH C 3 146 12 HOH HOH . T 5 HOH C 4 147 15 HOH HOH . T 5 HOH C 5 148 25 HOH HOH . T 5 HOH C 6 149 35 HOH HOH . T 5 HOH C 7 150 39 HOH HOH . T 5 HOH C 8 151 41 HOH HOH . T 5 HOH C 9 152 45 HOH HOH . T 5 HOH C 10 153 52 HOH HOH . U 5 HOH D 1 144 1 HOH HOH . U 5 HOH D 2 145 2 HOH HOH . U 5 HOH D 3 146 10 HOH HOH . U 5 HOH D 4 147 13 HOH HOH . U 5 HOH D 5 148 16 HOH HOH . U 5 HOH D 6 149 18 HOH HOH . U 5 HOH D 7 150 21 HOH HOH . U 5 HOH D 8 151 30 HOH HOH . U 5 HOH D 9 152 46 HOH HOH . U 5 HOH D 10 153 49 HOH HOH . U 5 HOH D 11 154 51 HOH HOH . U 5 HOH D 12 155 57 HOH HOH . V 5 HOH E 1 144 6 HOH HOH . V 5 HOH E 2 145 14 HOH HOH . V 5 HOH E 3 146 23 HOH HOH . V 5 HOH E 4 147 27 HOH HOH . V 5 HOH E 5 148 29 HOH HOH . V 5 HOH E 6 149 31 HOH HOH . V 5 HOH E 7 150 44 HOH HOH . V 5 HOH E 8 151 56 HOH HOH . W 5 HOH F 1 144 5 HOH HOH . W 5 HOH F 2 145 7 HOH HOH . W 5 HOH F 3 146 9 HOH HOH . W 5 HOH F 4 147 20 HOH HOH . W 5 HOH F 5 148 22 HOH HOH . W 5 HOH F 6 149 37 HOH HOH . W 5 HOH F 7 150 40 HOH HOH . W 5 HOH F 8 151 43 HOH HOH . W 5 HOH F 9 152 47 HOH HOH . W 5 HOH F 10 153 53 HOH HOH . W 5 HOH F 11 154 58 HOH HOH . W 5 HOH F 12 155 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . G 2 11.743 23.497 140.783 1 40.63 ? N1 CTP 142 A 1 HETATM 2 C C2 CTP . . . G 2 11.451 22.424 141.61 1 39.2 ? C2 CTP 142 A 1 HETATM 3 N N3 CTP . . . G 2 10.857 21.285 141.106 1 39.16 ? N3 CTP 142 A 1 HETATM 4 C C4 CTP . . . G 2 10.467 21.253 139.784 1 42.66 ? C4 CTP 142 A 1 HETATM 5 C C5 CTP . . . G 2 10.696 22.356 138.964 1 39.73 ? C5 CTP 142 A 1 HETATM 6 C C6 CTP . . . G 2 11.445 23.429 139.446 1 40.38 ? C6 CTP 142 A 1 HETATM 7 O O2 CTP . . . G 2 11.72 22.49 142.808 1 38.92 ? O2 CTP 142 A 1 HETATM 8 N N4 CTP . . . G 2 9.877 20.164 139.301 1 44.83 ? N4 CTP 142 A 1 HETATM 9 C C1' CTP . . . G 2 12.349 24.714 141.369 1 36.78 ? C1' CTP 142 A 1 HETATM 10 C C2' CTP . . . G 2 13.763 24.899 140.851 1 36.19 ? C2' CTP 142 A 1 HETATM 11 O O2' CTP . . . G 2 14.597 24.994 141.98 1 35.46 ? O2' CTP 142 A 1 HETATM 12 C C3' CTP . . . G 2 13.736 26.233 140.134 1 37.59 ? C3' CTP 142 A 1 HETATM 13 C C4' CTP . . . G 2 12.547 26.926 140.771 1 37.13 ? C4' CTP 142 A 1 HETATM 14 O O4' CTP . . . G 2 11.627 25.886 141.043 1 37.42 ? O4' CTP 142 A 1 HETATM 15 O O3' CTP . . . G 2 14.924 26.981 140.291 1 38.32 ? O3' CTP 142 A 1 HETATM 16 C C5' CTP . . . G 2 11.968 28.003 139.866 1 38.19 ? C5' CTP 142 A 1 HETATM 17 O O5' CTP . . . G 2 11.247 27.395 138.826 1 37.61 ? O5' CTP 142 A 1 HETATM 18 P PA CTP . . . G 2 11.711 27.644 137.313 1 33.07 ? PA CTP 142 A 1 HETATM 19 O O1A CTP . . . G 2 11.119 28.976 136.936 1 31.97 ? O1A CTP 142 A 1 HETATM 20 O O2A CTP . . . G 2 11.257 26.512 136.423 1 37.44 ? O2A CTP 142 A 1 HETATM 21 O O3A CTP . . . G 2 13.32 27.67 137.366 1 37.38 ? O3A CTP 142 A 1 HETATM 22 P PB CTP . . . G 2 14.228 28.982 137.149 1 37.12 ? PB CTP 142 A 1 HETATM 23 O O1B CTP . . . G 2 15.355 28.559 136.242 1 35.13 ? O1B CTP 142 A 1 HETATM 24 O O2B CTP . . . G 2 14.799 29.472 138.465 1 41.25 ? O2B CTP 142 A 1 HETATM 25 O O3B CTP . . . G 2 13.339 30.111 136.37 1 47.25 ? O3B CTP 142 A 1 HETATM 26 P PG CTP . . . G 2 12.457 31.343 136.984 1 61.51 ? PG CTP 142 A 1 HETATM 27 O O1G CTP . . . G 2 12.935 32.641 136.358 1 42.53 ? O1G CTP 142 A 1 HETATM 28 O O2G CTP . . . G 2 12.521 31.465 138.5 1 43.42 ? O2G CTP 142 A 1 HETATM 29 O O3G CTP . . . G 2 11.014 31.14 136.554 1 43.83 ? O3G CTP 142 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 29 #