data_3FCK # _model_server_result.job_id G4d_oYa4AToKQ36kv3VOfA _model_server_result.datetime_utc '2024-11-04 23:18:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3FCK # _exptl.entry_id 3FCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.338 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-({[3-({[(1E)-(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)methylidene]amino}oxy)propyl]amino}methyl)benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FCK _cell.length_a 43.18 _cell.length_b 69.149 _cell.length_c 70.037 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H18 N4 O5' _chem_comp.formula_weight 346.338 _chem_comp.id FCK _chem_comp.mon_nstd_flag . _chem_comp.name '3-({[3-({[(1E)-(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)methylidene]amino}oxy)propyl]amino}methyl)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 H1 FCK sing 83 n n C2 C1 FCK doub 84 n y C2 H2 FCK sing 85 n n C3 C2 FCK sing 86 n y C4 C3 FCK doub 87 n y C4 C5 FCK sing 88 n y C4 H4 FCK sing 89 n n C5 C6 FCK doub 90 n y C6 C1 FCK sing 91 n y C6 H6 FCK sing 92 n n C7 N18 FCK sing 93 n n C7 H7 FCK sing 94 n n C7 H7A FCK sing 95 n n O39 C38 FCK doub 96 n n C38 C5 FCK sing 97 n n C38 O40 FCK sing 98 n n O40 HO40 FCK sing 99 n n C17 C3 FCK sing 100 n n C17 H17 FCK sing 101 n n C17 H17A FCK sing 102 n n N18 C17 FCK sing 103 n n N18 HN18 FCK sing 104 n n C22 C7 FCK sing 105 n n C22 H22 FCK sing 106 n n C22 H22A FCK sing 107 n n C23 C22 FCK sing 108 n n C23 H23 FCK sing 109 n n C23 H23A FCK sing 110 n n O27 C23 FCK sing 111 n n N31 O27 FCK sing 112 n n C30 N31 FCK doub 113 e n C16 C30 FCK sing 114 n n N11 C16 FCK sing 115 n n C15 C16 FCK doub 116 n n C14 C15 FCK sing 117 n n C14 N13 FCK sing 118 n n O33 C14 FCK doub 119 n n N13 C12 FCK sing 120 n n N13 HN13 FCK sing 121 n n C12 N11 FCK sing 122 n n O34 C12 FCK doub 123 n n C30 H30 FCK sing 124 n n N11 H171 FCK sing 125 n n C15 H15 FCK sing 126 n n # _atom_sites.entry_id 3FCK _atom_sites.fract_transf_matrix[1][1] 0.023159 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FCK B 1 1 1 FCK FCK . C 3 HOH B 1 2 2 HOH HOH . C 3 HOH B 2 3 3 HOH HOH . C 3 HOH B 3 4 4 HOH HOH . C 3 HOH B 4 5 5 HOH HOH . C 3 HOH B 5 6 6 HOH HOH . C 3 HOH B 6 7 7 HOH HOH . C 3 HOH B 7 8 8 HOH HOH . C 3 HOH B 8 9 9 HOH HOH . C 3 HOH B 9 10 10 HOH HOH . C 3 HOH B 10 11 11 HOH HOH . C 3 HOH B 11 12 12 HOH HOH . C 3 HOH B 12 13 13 HOH HOH . C 3 HOH B 13 14 14 HOH HOH . C 3 HOH B 14 15 15 HOH HOH . C 3 HOH B 15 16 16 HOH HOH . C 3 HOH B 16 17 17 HOH HOH . C 3 HOH B 17 18 18 HOH HOH . C 3 HOH B 18 19 19 HOH HOH . C 3 HOH B 19 20 20 HOH HOH . C 3 HOH B 20 21 21 HOH HOH . C 3 HOH B 21 22 22 HOH HOH . C 3 HOH B 22 23 23 HOH HOH . C 3 HOH B 23 24 24 HOH HOH . C 3 HOH B 24 25 25 HOH HOH . C 3 HOH B 25 26 26 HOH HOH . C 3 HOH B 26 27 27 HOH HOH . C 3 HOH B 27 28 28 HOH HOH . C 3 HOH B 28 29 29 HOH HOH . C 3 HOH B 29 30 30 HOH HOH . C 3 HOH B 30 31 31 HOH HOH . C 3 HOH B 31 32 32 HOH HOH . C 3 HOH B 32 33 33 HOH HOH . C 3 HOH B 33 34 34 HOH HOH . C 3 HOH B 34 35 35 HOH HOH . C 3 HOH B 35 36 36 HOH HOH . C 3 HOH B 36 37 37 HOH HOH . C 3 HOH B 37 38 38 HOH HOH . C 3 HOH B 38 39 39 HOH HOH . C 3 HOH B 39 40 40 HOH HOH . C 3 HOH B 40 41 41 HOH HOH . C 3 HOH B 41 42 42 HOH HOH . C 3 HOH B 42 43 43 HOH HOH . C 3 HOH B 43 44 44 HOH HOH . C 3 HOH B 44 45 45 HOH HOH . C 3 HOH B 45 46 46 HOH HOH . C 3 HOH B 46 47 47 HOH HOH . C 3 HOH B 47 48 48 HOH HOH . C 3 HOH B 48 49 49 HOH HOH . C 3 HOH B 49 50 50 HOH HOH . C 3 HOH B 50 51 51 HOH HOH . C 3 HOH B 51 52 52 HOH HOH . C 3 HOH B 52 53 53 HOH HOH . C 3 HOH B 53 54 54 HOH HOH . C 3 HOH B 54 55 55 HOH HOH . C 3 HOH B 55 56 56 HOH HOH . C 3 HOH B 56 57 57 HOH HOH . C 3 HOH B 57 58 58 HOH HOH . C 3 HOH B 58 59 59 HOH HOH . C 3 HOH B 59 60 60 HOH HOH . C 3 HOH B 60 61 61 HOH HOH . C 3 HOH B 61 62 62 HOH HOH . C 3 HOH B 62 63 63 HOH HOH . C 3 HOH B 63 64 64 HOH HOH . C 3 HOH B 64 65 65 HOH HOH . C 3 HOH B 65 66 66 HOH HOH . C 3 HOH B 66 67 67 HOH HOH . C 3 HOH B 67 68 68 HOH HOH . C 3 HOH B 68 69 69 HOH HOH . C 3 HOH B 69 70 70 HOH HOH . C 3 HOH B 70 71 71 HOH HOH . C 3 HOH B 71 72 72 HOH HOH . C 3 HOH B 72 73 73 HOH HOH . C 3 HOH B 73 74 74 HOH HOH . C 3 HOH B 74 75 75 HOH HOH . C 3 HOH B 75 76 76 HOH HOH . C 3 HOH B 76 77 77 HOH HOH . C 3 HOH B 77 78 78 HOH HOH . C 3 HOH B 78 79 79 HOH HOH . C 3 HOH B 79 80 80 HOH HOH . C 3 HOH B 80 81 81 HOH HOH . C 3 HOH B 81 305 1 HOH HOH . C 3 HOH B 82 306 82 HOH HOH . C 3 HOH B 83 307 83 HOH HOH . C 3 HOH B 84 308 84 HOH HOH . C 3 HOH B 85 309 85 HOH HOH . C 3 HOH B 86 310 86 HOH HOH . C 3 HOH B 87 311 87 HOH HOH . C 3 HOH B 88 312 88 HOH HOH . C 3 HOH B 89 313 89 HOH HOH . C 3 HOH B 90 314 90 HOH HOH . C 3 HOH B 91 315 91 HOH HOH . C 3 HOH B 92 316 92 HOH HOH . C 3 HOH B 93 317 93 HOH HOH . C 3 HOH B 94 318 94 HOH HOH . C 3 HOH B 95 319 95 HOH HOH . C 3 HOH B 96 320 96 HOH HOH . C 3 HOH B 97 321 97 HOH HOH . C 3 HOH B 98 322 98 HOH HOH . C 3 HOH B 99 323 99 HOH HOH . C 3 HOH B 100 324 100 HOH HOH . C 3 HOH B 101 325 101 HOH HOH . C 3 HOH B 102 326 102 HOH HOH . C 3 HOH B 103 327 103 HOH HOH . C 3 HOH B 104 328 104 HOH HOH . C 3 HOH B 105 329 105 HOH HOH . C 3 HOH B 106 330 106 HOH HOH . C 3 HOH B 107 331 107 HOH HOH . C 3 HOH B 108 332 108 HOH HOH . C 3 HOH B 109 333 109 HOH HOH . C 3 HOH B 110 334 110 HOH HOH . C 3 HOH B 111 335 111 HOH HOH . C 3 HOH B 112 336 112 HOH HOH . C 3 HOH B 113 337 113 HOH HOH . C 3 HOH B 114 338 114 HOH HOH . C 3 HOH B 115 339 115 HOH HOH . C 3 HOH B 116 340 116 HOH HOH . C 3 HOH B 117 341 117 HOH HOH . C 3 HOH B 118 342 118 HOH HOH . C 3 HOH B 119 343 119 HOH HOH . C 3 HOH B 120 344 120 HOH HOH . C 3 HOH B 121 345 121 HOH HOH . C 3 HOH B 122 346 122 HOH HOH . C 3 HOH B 123 347 123 HOH HOH . C 3 HOH B 124 348 124 HOH HOH . C 3 HOH B 125 349 125 HOH HOH . C 3 HOH B 126 350 126 HOH HOH . C 3 HOH B 127 351 127 HOH HOH . C 3 HOH B 128 352 128 HOH HOH . C 3 HOH B 129 353 129 HOH HOH . C 3 HOH B 130 354 130 HOH HOH . C 3 HOH B 131 355 131 HOH HOH . C 3 HOH B 132 356 132 HOH HOH . C 3 HOH B 133 357 133 HOH HOH . C 3 HOH B 134 358 134 HOH HOH . C 3 HOH B 135 359 135 HOH HOH . C 3 HOH B 136 360 136 HOH HOH . C 3 HOH B 137 361 137 HOH HOH . C 3 HOH B 138 362 138 HOH HOH . C 3 HOH B 139 363 139 HOH HOH . C 3 HOH B 140 364 140 HOH HOH . C 3 HOH B 141 365 141 HOH HOH . C 3 HOH B 142 366 142 HOH HOH . C 3 HOH B 143 367 143 HOH HOH . C 3 HOH B 144 368 144 HOH HOH . C 3 HOH B 145 369 145 HOH HOH . C 3 HOH B 146 370 146 HOH HOH . C 3 HOH B 147 371 147 HOH HOH . C 3 HOH B 148 372 148 HOH HOH . C 3 HOH B 149 373 149 HOH HOH . C 3 HOH B 150 374 150 HOH HOH . C 3 HOH B 151 375 151 HOH HOH . C 3 HOH B 152 376 152 HOH HOH . C 3 HOH B 153 377 153 HOH HOH . C 3 HOH B 154 378 154 HOH HOH . C 3 HOH B 155 379 155 HOH HOH . C 3 HOH B 156 380 156 HOH HOH . C 3 HOH B 157 381 157 HOH HOH . C 3 HOH B 158 382 158 HOH HOH . C 3 HOH B 159 383 159 HOH HOH . C 3 HOH B 160 384 160 HOH HOH . C 3 HOH B 161 385 161 HOH HOH . C 3 HOH B 162 386 162 HOH HOH . C 3 HOH B 163 387 163 HOH HOH . C 3 HOH B 164 388 164 HOH HOH . C 3 HOH B 165 389 165 HOH HOH . C 3 HOH B 166 390 166 HOH HOH . C 3 HOH B 167 391 167 HOH HOH . C 3 HOH B 168 392 168 HOH HOH . C 3 HOH B 169 393 169 HOH HOH . C 3 HOH B 170 394 170 HOH HOH . C 3 HOH B 171 395 171 HOH HOH . C 3 HOH B 172 396 172 HOH HOH . C 3 HOH B 173 397 173 HOH HOH . C 3 HOH B 174 398 174 HOH HOH . C 3 HOH B 175 399 175 HOH HOH . C 3 HOH B 176 400 176 HOH HOH . C 3 HOH B 177 401 177 HOH HOH . C 3 HOH B 178 402 178 HOH HOH . C 3 HOH B 179 403 179 HOH HOH . C 3 HOH B 180 404 180 HOH HOH . C 3 HOH B 181 405 181 HOH HOH . C 3 HOH B 182 406 182 HOH HOH . C 3 HOH B 183 407 183 HOH HOH . C 3 HOH B 184 408 184 HOH HOH . C 3 HOH B 185 409 185 HOH HOH . C 3 HOH B 186 410 186 HOH HOH . C 3 HOH B 187 411 187 HOH HOH . C 3 HOH B 188 412 188 HOH HOH . C 3 HOH B 189 413 189 HOH HOH . C 3 HOH B 190 414 190 HOH HOH . C 3 HOH B 191 415 191 HOH HOH . C 3 HOH B 192 416 192 HOH HOH . C 3 HOH B 193 417 193 HOH HOH . C 3 HOH B 194 418 194 HOH HOH . C 3 HOH B 195 419 195 HOH HOH . C 3 HOH B 196 420 196 HOH HOH . C 3 HOH B 197 421 197 HOH HOH . C 3 HOH B 198 422 198 HOH HOH . C 3 HOH B 199 423 199 HOH HOH . C 3 HOH B 200 424 200 HOH HOH . C 3 HOH B 201 425 201 HOH HOH . C 3 HOH B 202 426 202 HOH HOH . C 3 HOH B 203 427 203 HOH HOH . C 3 HOH B 204 428 204 HOH HOH . C 3 HOH B 205 429 205 HOH HOH . C 3 HOH B 206 430 206 HOH HOH . C 3 HOH B 207 431 207 HOH HOH . C 3 HOH B 208 432 208 HOH HOH . C 3 HOH B 209 433 209 HOH HOH . C 3 HOH B 210 434 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FCK . . . B 2 -18.092 -2.42 9.267 0 2 ? C1 FCK 1 B 1 HETATM 2 C C2 FCK . . . B 2 -17.312 -1.7 8.368 0 2 ? C2 FCK 1 B 1 HETATM 3 C C3 FCK . . . B 2 -17.45 -1.899 6.997 0 2 ? C3 FCK 1 B 1 HETATM 4 C C4 FCK . . . B 2 -18.379 -2.825 6.537 0 2 ? C4 FCK 1 B 1 HETATM 5 C C5 FCK . . . B 2 -19.163 -3.55 7.428 0 2 ? C5 FCK 1 B 1 HETATM 6 C C6 FCK . . . B 2 -19.017 -3.345 8.798 0 2 ? C6 FCK 1 B 1 HETATM 7 C C7 FCK . . . B 2 -16.839 0.365 4.053 0 2 ? C7 FCK 1 B 1 HETATM 8 O O39 FCK . . . B 2 -20.245 -4.707 5.737 0 2 ? O39 FCK 1 B 1 HETATM 9 C C38 FCK . . . B 2 -20.132 -4.521 6.909 0 2 ? C38 FCK 1 B 1 HETATM 10 O O40 FCK . . . B 2 -20.866 -5.169 7.829 0 2 ? O40 FCK 1 B 1 HETATM 11 C C17 FCK . . . B 2 -16.619 -1.133 6.006 0 2 ? C17 FCK 1 B 1 HETATM 12 N N18 FCK . . . B 2 -17.437 -0.161 5.281 0 2 ? N18 FCK 1 B 1 HETATM 13 C C22 FCK . . . B 2 -17.063 -0.56 2.85 0 2 ? C22 FCK 1 B 1 HETATM 14 C C23 FCK . . . B 2 -16.486 0.01 1.552 0 2 ? C23 FCK 1 B 1 HETATM 15 O O27 FCK . . . B 2 -16.749 -0.89 0.5 0 2 ? O27 FCK 1 B 1 HETATM 16 N N31 FCK . . . B 2 -15.862 -0.843 -0.762 1 48.24 ? N31 FCK 1 B 1 HETATM 17 C C30 FCK . . . B 2 -16.423 -1.044 -1.873 1 47.88 ? C30 FCK 1 B 1 HETATM 18 C C16 FCK . . . B 2 -15.84 -0.519 -3.133 1 47.98 ? C16 FCK 1 B 1 HETATM 19 N N11 FCK . . . B 2 -15.142 0.632 -3.146 1 48.02 ? N11 FCK 1 B 1 HETATM 20 C C15 FCK . . . B 2 -16.023 -1.221 -4.323 1 47.45 ? C15 FCK 1 B 1 HETATM 21 C C14 FCK . . . B 2 -15.474 -0.711 -5.496 1 47 ? C14 FCK 1 B 1 HETATM 22 O O33 FCK . . . B 2 -15.618 -1.314 -6.58 1 45.26 ? O33 FCK 1 B 1 HETATM 23 N N13 FCK . . . B 2 -14.785 0.438 -5.455 1 47.41 ? N13 FCK 1 B 1 HETATM 24 C C12 FCK . . . B 2 -14.621 1.098 -4.298 1 47.86 ? C12 FCK 1 B 1 HETATM 25 O O34 FCK . . . B 2 -13.974 2.164 -4.306 1 47.76 ? O34 FCK 1 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #